Wall clock time and date at job start Tue Mar 31 2020 21:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00063 * 2 1 4 4 H 1.48501 * 109.47118 * 239.99992 * 3 2 1 5 5 H 1.48504 * 109.46965 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47287 * 119.99808 * 3 2 1 7 7 C 1.37879 * 120.00020 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99621 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47197 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47146 * 179.97438 * 10 9 7 12 12 C 1.34769 * 119.99902 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00502 * 354.56274 * 12 11 10 14 14 C 1.50711 * 120.00088 * 174.56377 * 12 11 10 15 15 C 1.50695 * 115.54735 * 302.92205 * 14 12 11 16 16 C 1.38233 * 120.41390 * 149.04852 * 15 14 12 17 17 N 1.31855 * 120.78521 * 179.97438 * 16 15 14 18 18 C 1.31878 * 121.73592 * 0.02562 * 17 16 15 19 19 C 1.38277 * 120.75340 * 0.02562 * 18 17 16 20 20 Br 1.89092 * 120.43086 * 179.97438 * 19 18 17 21 21 C 1.38616 * 120.41543 * 328.76811 * 15 14 12 22 22 C 1.53000 * 117.49878 * 157.24722 * 14 12 11 23 23 C 1.53001 * 117.49891 * 88.58720 * 14 12 11 24 24 H 0.96999 * 119.99851 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.46776 * 60.00518 * 9 7 2 26 26 H 1.08993 * 109.47546 * 300.00754 * 9 7 2 27 27 H 1.08993 * 109.47671 * 300.00354 * 10 9 7 28 28 H 1.09002 * 109.46636 * 60.00675 * 10 9 7 29 29 H 0.96999 * 119.99743 * 0.02562 * 11 10 9 30 30 H 1.07998 * 119.60595 * 359.97438 * 16 15 14 31 31 H 1.08005 * 119.62368 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.79145 * 0.02562 * 21 15 14 33 33 H 1.08997 * 117.50173 * 0.02562 * 22 14 12 34 34 H 1.08997 * 117.49524 * 145.02399 * 22 14 12 35 35 H 1.08997 * 117.50123 * 214.98287 * 23 14 12 36 36 H 1.09000 * 117.49650 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0016 13 8 3.3954 -6.1004 -0.1020 14 6 1.4384 -7.4002 0.1227 15 6 0.5716 -7.5373 1.3478 16 6 -0.5847 -8.2936 1.3058 17 7 -1.3482 -8.4190 2.3735 18 6 -1.0449 -7.8338 3.5158 19 6 0.0955 -7.0606 3.6332 20 35 0.5212 -6.2251 5.2753 21 6 0.9270 -6.9114 2.5324 22 6 2.1256 -8.6627 -0.4016 23 6 0.9464 -8.0582 -1.1680 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6247 -2.5571 0.8895 27 1 2.8713 -3.6040 -0.8921 28 1 2.8726 -3.6047 0.8878 29 1 0.5428 -4.9308 -0.0005 30 1 -0.8661 -8.7876 0.3876 31 1 -1.6947 -7.9598 4.3692 32 1 1.8269 -6.3176 2.5957 33 1 3.1190 -8.5515 -0.8360 34 1 1.9504 -9.5925 0.1394 35 1 -0.0040 -8.5907 -1.1309 36 1 1.1643 -7.5495 -2.1070 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281515451.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:04 Heat of formation + Delta-G solvation = -2.128465 kcal Electronic energy + Delta-G solvation = -20536.209752 eV Core-core repulsion = 17259.248870 eV Total energy + Delta-G solvation = -3276.960882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.99132 -40.61068 -37.87740 -36.59169 -34.85783 -34.26470 -32.73824 -31.60697 -30.53237 -27.40988 -25.74720 -24.95827 -23.72962 -23.17219 -22.65347 -20.76363 -18.89024 -18.51965 -18.10600 -17.49851 -16.81085 -16.61573 -16.45423 -15.95404 -15.59872 -15.32285 -15.09530 -14.66481 -14.34327 -14.29716 -13.87581 -13.26594 -13.24617 -12.95513 -12.59435 -12.52216 -12.37147 -12.29262 -12.16511 -11.83122 -11.69089 -11.57724 -11.47105 -11.04221 -10.62315 -10.58672 -10.53860 -10.09333 -9.87161 -8.25729 -6.36620 -0.29280 -0.07758 0.41053 1.40366 1.41909 1.42644 1.50523 2.10488 2.36894 2.41501 2.84529 3.09158 3.15558 3.40842 3.57972 3.62516 3.65288 3.74946 3.89944 4.08180 4.30948 4.43793 4.44563 4.67841 4.71503 4.75398 4.80353 4.87630 5.00230 5.15951 5.22363 5.34109 5.44159 5.53694 5.75334 6.12975 6.51352 6.67048 6.76148 7.14497 7.32942 8.85897 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.009928 B = 0.003933 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.727808 B = 7117.509198 C = 8999.859237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.548 4.548 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.141 3.859 11 N -0.710 5.710 12 C 0.544 3.456 13 O -0.580 6.580 14 C -0.142 4.142 15 C -0.083 4.083 16 C 0.125 3.875 17 N -0.478 5.478 18 C 0.128 3.872 19 C -0.147 4.147 20 Br -0.032 7.032 21 C -0.051 4.051 22 C -0.124 4.124 23 C -0.127 4.127 24 H 0.266 0.734 25 H 0.008 0.992 26 H 0.005 0.995 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.407 0.593 30 H 0.199 0.801 31 H 0.186 0.814 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.129 0.871 35 H 0.145 0.855 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 -21.104 6.018 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.018 3.982 11 N -0.359 5.359 12 C 0.331 3.669 13 O -0.460 6.460 14 C -0.146 4.146 15 C -0.087 4.087 16 C -0.032 4.032 17 N -0.186 5.186 18 C -0.030 4.030 19 C -0.228 4.228 20 Br 0.053 6.947 21 C -0.078 4.078 22 C -0.161 4.161 23 C -0.163 4.163 24 H 0.075 0.925 25 H 0.026 0.974 26 H 0.023 0.977 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.242 0.758 30 H 0.216 0.784 31 H 0.203 0.797 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.147 0.853 35 H 0.163 0.837 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.415 -21.156 6.538 22.405 hybrid contribution 0.841 1.827 -0.060 2.013 sum -2.574 -19.328 6.478 20.547 Atomic orbital electron populations 1.70051 1.07563 1.28078 1.50836 1.25849 0.95746 1.03030 0.94322 0.85528 0.78352 0.78219 0.79152 1.19245 1.20559 1.19393 1.21414 0.93544 0.91859 1.51787 0.92290 1.19098 0.94142 0.91808 0.96173 1.21254 0.95009 0.82087 0.99895 1.46107 1.10913 1.05544 1.73377 1.19885 0.86910 0.84899 0.75194 1.90667 1.15769 1.87969 1.51620 1.19943 1.04925 0.93144 0.96619 1.19786 0.96669 0.99603 0.92598 1.23287 0.88243 0.93707 0.97935 1.67989 1.30801 1.20337 0.99440 1.23192 0.92670 0.90300 0.96825 1.23014 1.00783 1.04803 0.94220 1.96785 1.94049 1.79425 1.24447 1.21435 0.98268 0.96437 0.91678 1.23223 0.98271 0.93553 1.01052 1.23440 1.00617 1.00300 0.91972 0.92527 0.97390 0.97665 0.93251 0.93552 0.75776 0.78429 0.79674 0.85931 0.88359 0.85254 0.83698 0.87575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.09 16 2 C 0.01 0.53 5.46 84.66 0.46 1.00 16 3 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 7 C -0.55 -30.57 9.11 25.60 0.23 -30.33 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.03 1.27 5.09 29.85 0.15 1.43 16 10 C 0.14 6.04 5.62 86.38 0.49 6.52 16 11 N -0.71 -24.52 5.53 -463.06 -2.56 -27.08 16 12 C 0.54 17.63 6.09 87.66 0.53 18.16 16 13 O -0.58 -23.28 16.51 -3.04 -0.05 -23.33 16 14 C -0.14 -3.13 2.38 -53.67 -0.13 -3.26 16 15 C -0.08 -1.76 5.46 -19.78 -0.11 -1.87 16 16 C 0.13 2.14 10.54 84.69 0.89 3.04 16 17 N -0.48 -9.47 10.36 -195.76 -2.03 -11.50 16 18 C 0.13 2.54 10.95 84.69 0.93 3.47 16 19 C -0.15 -3.35 6.25 22.40 0.14 -3.21 16 20 Br -0.03 -0.72 33.74 -20.37 -0.69 -1.41 16 21 C -0.05 -1.27 9.21 22.48 0.21 -1.06 16 22 C -0.12 -2.10 9.73 30.62 0.30 -1.80 16 23 C -0.13 -1.80 9.59 30.62 0.29 -1.50 16 24 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 29 H 0.41 12.70 8.48 -92.71 -0.79 11.91 16 30 H 0.20 1.90 5.96 -2.91 -0.02 1.88 16 31 H 0.19 2.76 8.06 -2.91 -0.02 2.74 16 32 H 0.12 3.58 7.47 -2.91 -0.02 3.56 16 33 H 0.10 2.00 7.85 -2.39 -0.02 1.98 16 34 H 0.13 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.15 1.02 6.12 -2.39 -0.01 1.00 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -68.43 334.58 1.70 -66.73 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.33 Total: 14.51 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: 4.39 Total: -9.43 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -4.30 Total: -92.67 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.05 Total: -23.33 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 35 Polarization: -0.72 SS G_CDS: -0.69 Total: -1.41 kcal Total: -68.43 1.70 -66.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281515451.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.598 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds