Wall clock time and date at job start Tue Mar 31 2020 20:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47219 * 223.76367 * 3 2 1 5 5 C 1.36820 * 119.99885 * 97.20079 * 4 3 2 6 6 H 1.08005 * 120.00113 * 322.44560 * 5 4 3 7 7 C 1.39078 * 120.00099 * 142.72747 * 5 4 3 8 8 N 1.31343 * 119.99658 * 341.47583 * 7 5 4 9 9 Si 1.86802 * 120.00263 * 161.48410 * 7 5 4 10 10 H 1.48507 * 109.46944 * 4.99452 * 9 7 5 11 11 H 1.48496 * 109.47242 * 124.99822 * 9 7 5 12 12 H 1.48503 * 109.46777 * 244.99818 * 9 7 5 13 13 C 1.34783 * 120.00170 * 277.20085 * 4 3 2 14 14 O 1.21590 * 120.00003 * 176.13646 * 13 4 3 15 15 C 1.47766 * 119.99570 * 356.13902 * 13 4 3 16 16 C 1.39529 * 119.65545 * 186.12634 * 15 13 4 17 17 C 1.38333 * 119.14313 * 179.79186 * 16 15 13 18 18 C 1.39189 * 118.47024 * 0.47402 * 17 16 15 19 19 O 1.35748 * 120.37819 * 179.77071 * 18 17 16 20 20 C 1.42901 * 116.99811 * 359.97438 * 19 18 17 21 21 C 1.39347 * 119.24770 * 359.74724 * 18 17 16 22 22 Br 1.89093 * 119.60755 * 180.02562 * 21 18 17 23 23 N 1.31459 * 120.78959 * 0.02562 * 21 18 17 24 24 H 4.40637 * 5.51374 * 180.02562 * 4 1 2 25 25 H 1.09010 * 109.47138 * 103.76589 * 3 2 1 26 26 H 1.09000 * 109.47420 * 343.76974 * 3 2 1 27 27 H 0.97011 * 120.00023 * 185.03467 * 8 7 5 28 28 H 1.07995 * 120.42674 * 0.02562 * 16 15 13 29 29 H 1.08007 * 120.76351 * 180.19432 * 17 16 15 30 30 H 1.09000 * 109.46785 * 299.99728 * 20 19 18 31 31 H 1.08997 * 109.47277 * 60.00106 * 20 19 18 32 32 H 1.09003 * 109.46861 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9984 0.9553 5 6 3.5021 0.6154 2.2162 6 1 2.9442 -0.1521 2.7320 7 6 4.5913 1.2187 2.8359 8 7 5.4768 1.8711 2.1181 9 14 4.7948 1.1009 4.6891 10 1 3.7397 0.2177 5.2478 11 1 6.1314 0.5366 5.0054 12 1 4.6749 2.4549 5.2872 13 6 3.2200 2.2935 0.5922 14 8 3.5578 3.1318 1.4057 15 6 2.9039 2.6946 -0.7944 16 6 3.1179 4.0131 -1.1974 17 6 2.8224 4.3760 -2.4992 18 6 2.3106 3.4076 -3.3581 19 8 2.0028 3.7224 -4.6422 20 6 2.2285 5.0730 -5.0510 21 6 2.1184 2.1111 -2.8850 22 35 1.4245 0.7872 -4.0433 23 7 2.4137 1.7972 -1.6431 24 1 -1.0501 -0.0004 -0.0001 25 1 3.0092 0.2454 -0.9982 26 1 3.0098 -0.9859 0.2872 27 1 6.2739 2.2292 2.5395 28 1 3.5127 4.7401 -0.5032 29 1 2.9808 5.3886 -2.8400 30 1 1.6313 5.7440 -4.4336 31 1 3.2847 5.3160 -4.9350 32 1 1.9412 5.1891 -6.0960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281543859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:05 Heat of formation + Delta-G solvation = 66.911933 kcal Electronic energy + Delta-G solvation = -21105.580990 eV Core-core repulsion = 17695.780829 eV Total energy + Delta-G solvation = -3409.800160 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.57933 -38.78414 -37.33778 -34.74956 -32.62680 -32.44381 -31.46869 -30.90563 -29.33633 -27.65477 -26.34366 -24.96969 -22.98559 -22.84689 -20.10073 -18.21394 -17.66489 -17.57713 -16.59697 -16.02231 -15.85874 -14.96130 -14.64057 -14.35321 -14.10451 -13.94442 -13.51837 -13.31313 -13.16996 -12.36462 -12.23185 -12.13808 -11.54680 -11.40896 -11.29199 -10.98504 -10.79632 -10.54300 -10.27747 -10.17639 -9.80367 -9.61574 -9.41672 -8.99586 -8.82747 -8.25209 -8.11866 -7.23018 -6.24261 -3.90198 1.05422 1.25025 1.60769 3.06291 3.26160 3.34627 3.37959 3.50056 3.57691 3.75785 4.24028 4.56535 4.66730 4.74379 4.80764 4.98320 5.06367 5.18038 5.20823 5.30925 5.37684 5.42179 5.75384 6.03168 6.26005 6.41960 6.43305 6.76354 6.85921 7.10538 7.49775 7.89767 8.12097 8.46481 8.88695 9.05724 9.50541 10.18618 10.83194 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.018432 B = 0.004705 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.693484 B = 5949.860633 C = 7057.096369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.138 4.138 3 C 0.192 3.808 4 N -0.418 5.418 5 C -0.333 4.333 6 H 0.088 0.912 7 C 0.062 3.938 8 N -0.810 5.810 9 Si 0.920 3.080 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.279 1.279 13 C 0.502 3.498 14 O -0.527 6.527 15 C 0.092 3.908 16 C -0.073 4.073 17 C -0.164 4.164 18 C 0.096 3.904 19 O -0.300 6.300 20 C 0.025 3.975 21 C 0.091 3.909 22 Br -0.008 7.008 23 N -0.401 5.401 24 H 0.204 0.796 25 H 0.121 0.879 26 H 0.083 0.917 27 H 0.268 0.732 28 H 0.153 0.847 29 H 0.146 0.854 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 2.838 -15.111 16.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.140 4.140 3 C 0.069 3.931 4 N -0.136 5.136 5 C -0.461 4.461 6 H 0.106 0.894 7 C -0.150 4.150 8 N -0.444 5.444 9 Si 0.746 3.254 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.205 1.205 13 C 0.290 3.710 14 O -0.405 6.405 15 C -0.048 4.048 16 C -0.094 4.094 17 C -0.191 4.191 18 C 0.045 3.955 19 O -0.211 6.211 20 C -0.071 4.071 21 C -0.128 4.128 22 Br 0.076 6.924 23 N -0.116 5.116 24 H 0.221 0.779 25 H 0.138 0.862 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.171 0.829 29 H 0.164 0.836 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.197 1.969 -14.947 16.300 hybrid contribution 0.303 1.358 0.759 1.585 sum -5.894 3.327 -14.188 15.720 Atomic orbital electron populations 1.24500 0.95546 1.03193 1.03990 1.23835 0.94921 0.97902 0.97299 1.19194 0.83425 0.93919 0.96527 1.43177 1.55066 1.03804 1.11553 1.19344 1.12506 1.23955 0.90248 0.89392 1.25246 0.94432 0.95651 0.99711 1.69854 1.07477 1.30477 1.36568 0.86019 0.77712 0.78265 0.83374 1.19391 1.21007 1.20464 1.17049 0.85942 0.83427 0.84614 1.90625 1.49505 1.49680 1.50655 1.22065 0.97240 0.90073 0.95447 1.22040 0.95222 0.97113 0.95071 1.21585 1.03666 0.99537 0.94325 1.19671 0.97286 0.93526 0.85053 1.86127 1.80713 1.30254 1.24048 1.23119 1.01366 0.81246 1.01349 1.22144 1.06648 0.89995 0.93980 1.96686 1.84349 1.52551 1.58836 1.68170 1.09130 1.33996 1.00263 0.77889 0.86198 0.89856 0.92221 0.82944 0.83646 0.92500 0.92433 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.73 19.25 29.55 0.57 -4.16 16 2 C -0.14 -2.88 12.27 -37.13 -0.46 -3.33 16 3 C 0.19 4.23 5.50 -6.83 -0.04 4.19 16 4 N -0.42 -10.87 2.53 -119.04 -0.30 -11.17 16 5 C -0.33 -9.16 9.27 -15.01 -0.14 -9.30 16 6 H 0.09 2.33 7.90 -52.48 -0.41 1.91 16 7 C 0.06 1.70 4.39 -17.45 -0.08 1.62 16 8 N -0.81 -23.39 11.20 55.50 0.62 -22.76 16 9 Si 0.92 21.41 29.59 -169.99 -5.03 16.38 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.50 13.22 6.77 -12.36 -0.08 13.14 16 14 O -0.53 -15.46 13.63 5.29 0.07 -15.39 16 15 C 0.09 2.01 6.62 -83.03 -0.55 1.46 16 16 C -0.07 -1.33 9.62 -39.07 -0.38 -1.71 16 17 C -0.16 -2.39 9.12 -39.19 -0.36 -2.74 16 18 C 0.10 1.47 6.71 -38.82 -0.26 1.21 16 19 O -0.30 -3.85 9.83 -18.95 -0.19 -4.04 16 20 C 0.02 0.20 9.83 101.05 0.99 1.19 16 21 C 0.09 1.58 7.18 -17.30 -0.12 1.46 16 22 Br -0.01 -0.12 33.33 -68.01 -2.27 -2.38 16 23 N -0.40 -8.01 4.94 -8.10 -0.04 -8.05 16 24 H 0.20 2.99 7.80 -54.08 -0.42 2.57 16 25 H 0.12 2.57 5.17 -53.49 -0.28 2.30 16 26 H 0.08 1.72 7.98 -51.93 -0.41 1.31 16 27 H 0.27 7.30 8.32 -40.82 -0.34 6.96 16 28 H 0.15 2.76 7.65 -52.49 -0.40 2.36 16 29 H 0.15 1.54 6.43 -52.48 -0.34 1.20 16 30 H 0.06 0.41 7.69 -51.93 -0.40 0.01 16 31 H 0.06 0.42 7.69 -51.93 -0.40 0.02 16 32 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -32.85 307.67 -6.02 -38.87 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -2.62 Total: 0.89 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -0.90 Total: 3.02 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.28 Total: -41.99 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.11 Total: -19.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 35 Polarization: -0.12 SS G_CDS: -2.27 Total: -2.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.85 -6.02 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281543859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.781 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds