Wall clock time and date at job start Tue Mar 31 2020 20:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47219 * 223.76367 * 3 2 1 5 5 C 1.36820 * 119.99885 * 97.20079 * 4 3 2 6 6 H 1.08005 * 120.00113 * 322.44560 * 5 4 3 7 7 C 1.39078 * 120.00099 * 142.72747 * 5 4 3 8 8 N 1.31343 * 119.99658 * 341.47583 * 7 5 4 9 9 Si 1.86802 * 120.00263 * 161.48410 * 7 5 4 10 10 H 1.48507 * 109.46944 * 4.99452 * 9 7 5 11 11 H 1.48496 * 109.47242 * 124.99822 * 9 7 5 12 12 H 1.48503 * 109.46777 * 244.99818 * 9 7 5 13 13 C 1.34783 * 120.00170 * 277.20085 * 4 3 2 14 14 O 1.21590 * 120.00003 * 176.13646 * 13 4 3 15 15 C 1.47766 * 119.99570 * 356.13902 * 13 4 3 16 16 C 1.39529 * 119.65545 * 186.12634 * 15 13 4 17 17 C 1.38333 * 119.14313 * 179.79186 * 16 15 13 18 18 C 1.39189 * 118.47024 * 0.47402 * 17 16 15 19 19 O 1.35748 * 120.37819 * 179.77071 * 18 17 16 20 20 C 1.42901 * 116.99811 * 359.97438 * 19 18 17 21 21 C 1.39347 * 119.24770 * 359.74724 * 18 17 16 22 22 Br 1.89093 * 119.60755 * 180.02562 * 21 18 17 23 23 N 1.31459 * 120.78959 * 0.02562 * 21 18 17 24 24 H 4.40637 * 5.51374 * 180.02562 * 4 1 2 25 25 H 1.09010 * 109.47138 * 103.76589 * 3 2 1 26 26 H 1.09000 * 109.47420 * 343.76974 * 3 2 1 27 27 H 0.97011 * 120.00023 * 185.03467 * 8 7 5 28 28 H 1.07995 * 120.42674 * 0.02562 * 16 15 13 29 29 H 1.08007 * 120.76351 * 180.19432 * 17 16 15 30 30 H 1.09000 * 109.46785 * 299.99728 * 20 19 18 31 31 H 1.08997 * 109.47277 * 60.00106 * 20 19 18 32 32 H 1.09003 * 109.46861 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.9984 0.9553 5 6 3.5021 0.6154 2.2162 6 1 2.9442 -0.1521 2.7320 7 6 4.5913 1.2187 2.8359 8 7 5.4768 1.8711 2.1181 9 14 4.7948 1.1009 4.6891 10 1 3.7397 0.2177 5.2478 11 1 6.1314 0.5366 5.0054 12 1 4.6749 2.4549 5.2872 13 6 3.2200 2.2935 0.5922 14 8 3.5578 3.1318 1.4057 15 6 2.9039 2.6946 -0.7944 16 6 3.1179 4.0131 -1.1974 17 6 2.8224 4.3760 -2.4992 18 6 2.3106 3.4076 -3.3581 19 8 2.0028 3.7224 -4.6422 20 6 2.2285 5.0730 -5.0510 21 6 2.1184 2.1111 -2.8850 22 35 1.4245 0.7872 -4.0433 23 7 2.4137 1.7972 -1.6431 24 1 -1.0501 -0.0004 -0.0001 25 1 3.0092 0.2454 -0.9982 26 1 3.0098 -0.9859 0.2872 27 1 6.2739 2.2292 2.5395 28 1 3.5127 4.7401 -0.5032 29 1 2.9808 5.3886 -2.8400 30 1 1.6313 5.7440 -4.4336 31 1 3.2847 5.3160 -4.9350 32 1 1.9412 5.1891 -6.0960 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281543859.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:04 Heat of formation + Delta-G solvation = 45.881186 kcal Electronic energy + Delta-G solvation = -21106.492951 eV Core-core repulsion = 17695.780829 eV Total energy + Delta-G solvation = -3410.712122 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94006 -40.29527 -38.83947 -36.62608 -34.48800 -33.80741 -33.00596 -32.47548 -30.63815 -28.62845 -28.12900 -26.69883 -24.42214 -24.25729 -21.86440 -19.45128 -19.33256 -19.05317 -18.04814 -17.69532 -16.99710 -16.75429 -16.17984 -15.81094 -15.67856 -15.40113 -14.88821 -14.77119 -14.67384 -14.04999 -13.82941 -13.58069 -13.27665 -12.87733 -12.74055 -12.38017 -12.34312 -12.09679 -11.96710 -11.46700 -11.40691 -11.06057 -10.91161 -10.77034 -10.51033 -10.11030 -9.44882 -9.23049 -8.27448 -6.00548 -0.34589 -0.07320 0.30637 1.39362 1.46694 1.55470 1.93370 2.00650 2.04528 2.19015 2.38524 2.87447 3.03107 3.24994 3.38687 3.59089 3.82332 3.84328 3.97808 4.20298 4.37746 4.42656 4.70269 4.72202 4.79009 4.88273 4.97097 5.25019 5.28420 5.42264 6.00094 6.10274 6.47802 6.89401 6.92245 7.10141 7.54337 8.22966 8.81671 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.018432 B = 0.004705 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.693484 B = 5949.860633 C = 7057.096369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.184 4.184 3 C 0.197 3.803 4 N -0.436 5.436 5 C -0.363 4.363 6 H 0.086 0.914 7 C 0.017 3.983 8 N -0.852 5.852 9 Si 0.982 3.018 10 H -0.258 1.258 11 H -0.270 1.270 12 H -0.290 1.290 13 C 0.497 3.503 14 O -0.572 6.572 15 C 0.053 3.947 16 C -0.073 4.073 17 C -0.146 4.146 18 C 0.122 3.878 19 O -0.302 6.302 20 C 0.008 3.992 21 C 0.067 3.933 22 Br 0.014 6.986 23 N -0.407 5.407 24 H 0.243 0.757 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.265 0.735 28 H 0.148 0.852 29 H 0.194 0.806 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 3.847 -17.405 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.186 4.186 3 C 0.075 3.925 4 N -0.154 5.154 5 C -0.491 4.491 6 H 0.104 0.896 7 C -0.191 4.191 8 N -0.486 5.486 9 Si 0.806 3.194 10 H -0.181 1.181 11 H -0.195 1.195 12 H -0.216 1.216 13 C 0.286 3.714 14 O -0.453 6.453 15 C -0.087 4.087 16 C -0.095 4.095 17 C -0.173 4.173 18 C 0.070 3.930 19 O -0.213 6.213 20 C -0.085 4.085 21 C -0.152 4.152 22 Br 0.097 6.903 23 N -0.121 5.121 24 H 0.259 0.741 25 H 0.140 0.860 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.166 0.834 29 H 0.211 0.789 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.695 2.948 -17.272 19.137 hybrid contribution 0.582 1.143 1.087 1.682 sum -7.113 4.091 -16.185 18.146 Atomic orbital electron populations 1.25370 0.96340 1.00770 1.01566 1.23777 0.95136 1.00118 0.99521 1.19116 0.84656 0.92904 0.95818 1.43369 1.55573 1.04633 1.11849 1.19556 1.13022 1.24721 0.91765 0.89594 1.26099 0.94031 0.95138 1.03823 1.69957 1.08128 1.32462 1.38093 0.85074 0.78521 0.77655 0.78127 1.18138 1.19473 1.21641 1.17737 0.84199 0.83124 0.86306 1.90557 1.51142 1.50895 1.52688 1.21464 1.01136 0.91920 0.94171 1.22070 0.95083 0.95563 0.96775 1.21946 1.01677 1.01477 0.92172 1.19719 0.94505 0.92666 0.86141 1.86160 1.79728 1.33361 1.22080 1.23605 1.02869 0.78822 1.03236 1.22529 1.07294 0.91849 0.93562 1.96689 1.84005 1.52126 1.57473 1.67945 1.08820 1.34125 1.01214 0.74054 0.85983 0.89954 0.92514 0.83440 0.78892 0.90850 0.90925 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.94 19.25 74.32 1.43 -6.51 16 2 C -0.18 -7.70 12.27 31.12 0.38 -7.32 16 3 C 0.20 9.00 5.50 84.57 0.47 9.47 16 4 N -0.44 -23.76 2.53 -648.80 -1.64 -25.41 16 5 C -0.36 -20.91 9.27 84.12 0.78 -20.13 16 6 H 0.09 4.77 7.90 -2.91 -0.02 4.74 16 7 C 0.02 0.97 4.39 84.97 0.37 1.34 16 8 N -0.85 -51.59 11.20 21.68 0.24 -51.35 16 9 Si 0.98 45.50 29.59 68.60 2.03 47.53 16 10 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 13 C 0.50 27.42 6.77 86.76 0.59 28.01 16 14 O -0.57 -35.32 13.63 -4.00 -0.05 -35.37 16 15 C 0.05 2.34 6.62 41.82 0.28 2.62 16 16 C -0.07 -2.65 9.62 22.60 0.22 -2.43 16 17 C -0.15 -3.79 9.12 22.52 0.21 -3.58 16 18 C 0.12 3.35 6.71 22.77 0.15 3.50 16 19 O -0.30 -6.47 9.83 -90.73 -0.89 -7.36 16 20 C 0.01 0.09 9.83 113.37 1.11 1.21 16 21 C 0.07 2.23 7.18 85.02 0.61 2.84 16 22 Br 0.01 0.38 33.33 -20.37 -0.68 -0.30 16 23 N -0.41 -16.23 4.94 -179.55 -0.89 -17.11 16 24 H 0.24 6.29 7.80 -4.41 -0.03 6.25 16 25 H 0.12 5.43 5.17 -5.48 -0.03 5.41 16 26 H 0.08 3.60 7.98 -2.39 -0.02 3.58 16 27 H 0.27 15.21 8.32 -92.70 -0.77 14.44 16 28 H 0.15 5.41 7.65 -2.91 -0.02 5.39 16 29 H 0.19 3.07 6.43 -2.91 -0.02 3.05 16 30 H 0.07 0.64 7.69 -2.39 -0.02 0.62 16 31 H 0.07 0.66 7.69 -2.39 -0.02 0.64 16 32 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -75.96 307.67 5.86 -70.10 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.15 Total: 10.25 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 6.60 Total: 9.02 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -2.29 Total: -93.87 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.95 Total: -42.73 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Atomic # 35 Polarization: 0.38 SS G_CDS: -0.68 Total: -0.30 kcal Total: -75.96 5.86 -70.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281543859.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.978 kcal (2) G-P(sol) polarization free energy of solvation -75.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds