Wall clock time and date at job start Tue Mar 31 2020 21:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47125 * 2 1 4 4 C 1.37101 * 119.99285 * 71.30654 * 3 2 1 5 5 H 1.08002 * 119.99771 * 221.43536 * 4 3 2 6 6 C 1.38952 * 120.00339 * 41.17368 * 4 3 2 7 7 N 1.31407 * 120.00180 * 151.63023 * 6 4 3 8 8 Si 1.86806 * 119.99813 * 331.62538 * 6 4 3 9 9 H 1.48496 * 109.47059 * 66.65935 * 8 6 4 10 10 H 1.48494 * 109.47300 * 186.66300 * 8 6 4 11 11 H 1.48499 * 109.46853 * 306.66180 * 8 6 4 12 12 C 1.34770 * 120.00529 * 251.30576 * 3 2 1 13 13 O 1.21287 * 120.00426 * 185.20436 * 12 3 2 14 14 C 1.50699 * 119.99936 * 5.20861 * 12 3 2 15 15 C 1.50705 * 115.54780 * 294.14084 * 14 12 3 16 16 C 1.38230 * 120.41575 * 148.60024 * 15 14 12 17 17 N 1.31850 * 120.78960 * 179.97438 * 16 15 14 18 18 C 1.31877 * 121.73350 * 0.02562 * 17 16 15 19 19 C 1.38278 * 120.74839 * 0.02562 * 18 17 16 20 20 Br 1.89110 * 120.42654 * 180.02562 * 19 18 17 21 21 C 1.38608 * 120.41224 * 328.31259 * 15 14 12 22 22 C 1.53004 * 117.50397 * 148.46898 * 14 12 3 23 23 C 1.52997 * 117.50038 * 79.80392 * 14 12 3 24 24 H 1.09002 * 109.46879 * 184.98804 * 1 2 3 25 25 H 1.08994 * 109.46829 * 304.98254 * 1 2 3 26 26 H 1.08998 * 109.47255 * 64.99071 * 1 2 3 27 27 H 1.09002 * 109.47446 * 240.00650 * 2 1 3 28 28 H 1.08999 * 109.47424 * 120.00230 * 2 1 3 29 29 H 0.97004 * 120.00025 * 179.97438 * 7 6 4 30 30 H 1.08008 * 119.60625 * 359.96478 * 16 15 14 31 31 H 1.07998 * 119.62807 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.79571 * 0.02562 * 21 15 14 33 33 H 1.09000 * 117.49058 * 359.97438 * 22 14 12 34 34 H 1.08994 * 117.49723 * 145.02046 * 22 14 12 35 35 H 1.09007 * 117.50305 * 214.97646 * 23 14 12 36 36 H 1.09001 * 117.50282 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.8880 2.1543 1.1248 5 1 1.5922 3.1893 1.0373 6 6 2.1311 1.6047 2.3776 7 7 2.5550 2.3686 3.3592 8 14 1.8552 -0.2202 2.6665 9 1 2.8393 -1.0010 1.8747 10 1 2.0278 -0.5246 4.1096 11 1 0.4790 -0.5855 2.2448 12 6 2.5957 1.8920 -1.1055 13 8 3.0844 3.0016 -1.0770 14 6 2.6339 1.0843 -2.3772 15 6 3.4714 -0.1675 -2.3272 16 6 3.1239 -1.2727 -3.0813 17 7 3.8516 -2.3715 -3.0435 18 6 4.9314 -2.4629 -2.2919 19 6 5.3404 -1.3985 -1.5097 20 35 6.8907 -1.5392 -0.4358 21 6 4.6033 -0.2231 -1.5290 22 6 2.5847 1.8489 -3.7016 23 6 1.3652 1.0517 -3.2318 24 1 -0.3633 -1.0238 0.0894 25 1 -0.3633 0.5892 0.8420 26 1 -0.3633 0.4344 -0.9313 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.7244 1.9849 4.2339 30 1 2.2456 -1.2357 -3.7088 31 1 5.5026 -3.3794 -2.2872 32 1 4.9014 0.6264 -0.9325 33 1 2.5243 2.9362 -3.6529 34 1 3.1578 1.4463 -4.5367 35 1 1.1366 0.1250 -3.7583 36 1 0.5030 1.6148 -2.8745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281909391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:55 Heat of formation + Delta-G solvation = 69.331082 kcal Electronic energy + Delta-G solvation = -22140.627508 eV Core-core repulsion = 18866.765344 eV Total energy + Delta-G solvation = -3273.862164 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84293 -39.01003 -36.48443 -35.24077 -33.16794 -32.32381 -31.61281 -29.84551 -29.46516 -26.20768 -24.19074 -23.77277 -22.98157 -22.17357 -21.53493 -18.54042 -17.51098 -16.98801 -16.71517 -16.35473 -16.11809 -14.97685 -14.61669 -14.37323 -13.98897 -13.78876 -13.46906 -13.14717 -12.99423 -12.45652 -12.38299 -12.18737 -12.00923 -11.61436 -11.45972 -11.32072 -11.14334 -10.80628 -10.62969 -10.48633 -10.37596 -10.27876 -9.70325 -9.46853 -9.35840 -8.84820 -8.82037 -8.53488 -7.73100 -6.46694 -4.05080 0.76446 1.08617 1.47932 2.99624 3.10757 3.21966 3.38782 3.52827 3.92327 4.08029 4.19857 4.32689 4.50555 4.71620 4.82601 4.88281 5.00774 5.02485 5.11680 5.21247 5.44417 5.50733 5.67129 5.81330 5.83915 5.90136 5.94426 6.00967 6.14070 6.24251 6.25052 6.35831 6.40734 6.76226 7.57084 7.70460 8.22757 8.40034 8.89949 9.25483 9.73969 10.60420 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.006671 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.001009 B = 4196.561525 C = 5461.540441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.058 3.942 3 N -0.448 5.448 4 C -0.329 4.329 5 H 0.103 0.897 6 C 0.069 3.931 7 N -0.841 5.841 8 Si 0.883 3.117 9 H -0.274 1.274 10 H -0.298 1.298 11 H -0.257 1.257 12 C 0.500 3.500 13 O -0.554 6.554 14 C -0.113 4.113 15 C -0.073 4.073 16 C 0.106 3.894 17 N -0.471 5.471 18 C 0.119 3.881 19 C -0.138 4.138 20 Br -0.034 7.034 21 C -0.032 4.032 22 C -0.133 4.133 23 C -0.159 4.159 24 H 0.050 0.950 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.274 0.726 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.150 0.850 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 -11.218 -11.281 16.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.064 4.064 3 N -0.169 5.169 4 C -0.455 4.455 5 H 0.121 0.879 6 C -0.139 4.139 7 N -0.474 5.474 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.227 1.227 11 H -0.183 1.183 12 C 0.287 3.713 13 O -0.435 6.435 14 C -0.117 4.117 15 C -0.076 4.076 16 C -0.051 4.051 17 N -0.179 5.179 18 C -0.040 4.040 19 C -0.220 4.220 20 Br 0.050 6.950 21 C -0.059 4.059 22 C -0.171 4.171 23 C -0.196 4.196 24 H 0.069 0.931 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.181 0.819 31 H 0.181 0.819 32 H 0.168 0.832 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.749 -11.374 -11.114 16.339 hybrid contribution -0.267 -0.350 0.769 0.886 sum 3.482 -11.724 -10.345 16.019 Atomic orbital electron populations 1.22142 0.95888 1.00962 1.02795 1.22312 0.95243 0.87146 1.01727 1.43546 1.50851 1.10386 1.12114 1.18834 1.48213 0.96139 0.82360 0.87927 1.25213 0.94046 0.98263 0.96412 1.69936 1.36482 1.37463 1.03558 0.87174 0.80185 0.85901 0.75221 1.20356 1.22652 1.18258 1.18768 0.81874 0.87290 0.83405 1.90591 1.48257 1.20865 1.83797 1.20179 1.01090 0.96035 0.94402 1.19937 0.95068 0.95267 0.97334 1.22824 0.98286 0.87580 0.96409 1.67847 1.05255 1.25680 1.19096 1.22769 0.93099 0.97116 0.91028 1.22947 0.97876 0.98516 1.02661 1.96742 1.32530 1.98429 1.67256 1.21609 0.92078 0.96875 0.95347 1.23036 0.99921 1.00122 0.93996 1.23179 0.92025 1.02662 1.01773 0.93080 0.90945 0.92700 0.91047 0.92155 0.91517 0.81857 0.81909 0.83223 0.87200 0.88298 0.88026 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.58 37.16 0.32 -2.52 16 2 C 0.06 1.17 5.24 -4.04 -0.02 1.15 16 3 N -0.45 -10.60 2.64 -114.81 -0.30 -10.91 16 4 C -0.33 -9.11 8.90 -14.93 -0.13 -9.24 16 5 H 0.10 3.17 8.03 -52.49 -0.42 2.75 16 6 C 0.07 1.90 5.50 -17.47 -0.10 1.80 16 7 N -0.84 -24.24 13.96 55.50 0.77 -23.46 16 8 Si 0.88 20.39 24.04 -169.99 -4.09 16.30 16 9 H -0.27 -6.27 6.41 56.52 0.36 -5.91 16 10 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.26 -5.41 5.28 56.52 0.30 -5.11 16 12 C 0.50 11.34 5.87 -10.99 -0.06 11.27 16 13 O -0.55 -14.87 16.66 5.55 0.09 -14.78 16 14 C -0.11 -1.89 1.36 -156.81 -0.21 -2.10 16 15 C -0.07 -1.14 3.34 -104.49 -0.35 -1.49 16 16 C 0.11 1.41 10.30 -17.55 -0.18 1.23 16 17 N -0.47 -6.48 10.36 -13.23 -0.14 -6.62 16 18 C 0.12 1.58 10.95 -17.52 -0.19 1.38 16 19 C -0.14 -2.06 6.25 -39.38 -0.25 -2.31 16 20 Br -0.03 -0.47 33.74 -68.01 -2.29 -2.77 16 21 C -0.03 -0.54 9.21 -39.25 -0.36 -0.90 16 22 C -0.13 -1.85 9.75 -26.69 -0.26 -2.11 16 23 C -0.16 -2.06 9.59 -26.69 -0.26 -2.31 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.42 6.76 -51.93 -0.35 1.07 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 1.29 4.45 -51.93 -0.23 1.06 16 28 H 0.06 1.33 1.51 -51.93 -0.08 1.25 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.16 1.71 5.96 -52.48 -0.31 1.40 16 31 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.15 2.91 7.49 -52.49 -0.39 2.51 16 33 H 0.11 1.66 8.00 -51.93 -0.42 1.24 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.10 0.99 6.12 -51.93 -0.32 0.68 16 36 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -31.28 312.25 -7.21 -38.49 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.91 Total: 5.17 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.05 Total: -6.13 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.33 Total: -40.99 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.09 Total: -14.78 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.09 Total: 16.30 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.28 -7.21 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281909391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.825 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds