Wall clock time and date at job start Tue Mar 31 2020 21:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47125 * 2 1 4 4 C 1.37101 * 119.99285 * 71.30654 * 3 2 1 5 5 H 1.08002 * 119.99771 * 221.43536 * 4 3 2 6 6 C 1.38952 * 120.00339 * 41.17368 * 4 3 2 7 7 N 1.31407 * 120.00180 * 151.63023 * 6 4 3 8 8 Si 1.86806 * 119.99813 * 331.62538 * 6 4 3 9 9 H 1.48496 * 109.47059 * 66.65935 * 8 6 4 10 10 H 1.48494 * 109.47300 * 186.66300 * 8 6 4 11 11 H 1.48499 * 109.46853 * 306.66180 * 8 6 4 12 12 C 1.34770 * 120.00529 * 251.30576 * 3 2 1 13 13 O 1.21287 * 120.00426 * 185.20436 * 12 3 2 14 14 C 1.50699 * 119.99936 * 5.20861 * 12 3 2 15 15 C 1.50705 * 115.54780 * 294.14084 * 14 12 3 16 16 C 1.38230 * 120.41575 * 148.60024 * 15 14 12 17 17 N 1.31850 * 120.78960 * 179.97438 * 16 15 14 18 18 C 1.31877 * 121.73350 * 0.02562 * 17 16 15 19 19 C 1.38278 * 120.74839 * 0.02562 * 18 17 16 20 20 Br 1.89110 * 120.42654 * 180.02562 * 19 18 17 21 21 C 1.38608 * 120.41224 * 328.31259 * 15 14 12 22 22 C 1.53004 * 117.50397 * 148.46898 * 14 12 3 23 23 C 1.52997 * 117.50038 * 79.80392 * 14 12 3 24 24 H 1.09002 * 109.46879 * 184.98804 * 1 2 3 25 25 H 1.08994 * 109.46829 * 304.98254 * 1 2 3 26 26 H 1.08998 * 109.47255 * 64.99071 * 1 2 3 27 27 H 1.09002 * 109.47446 * 240.00650 * 2 1 3 28 28 H 1.08999 * 109.47424 * 120.00230 * 2 1 3 29 29 H 0.97004 * 120.00025 * 179.97438 * 7 6 4 30 30 H 1.08008 * 119.60625 * 359.96478 * 16 15 14 31 31 H 1.07998 * 119.62807 * 180.02562 * 18 17 16 32 32 H 1.07996 * 120.79571 * 0.02562 * 21 15 14 33 33 H 1.09000 * 117.49058 * 359.97438 * 22 14 12 34 34 H 1.08994 * 117.49723 * 145.02046 * 22 14 12 35 35 H 1.09007 * 117.50305 * 214.97646 * 23 14 12 36 36 H 1.09001 * 117.50282 * 0.02562 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.8880 2.1543 1.1248 5 1 1.5922 3.1893 1.0373 6 6 2.1311 1.6047 2.3776 7 7 2.5550 2.3686 3.3592 8 14 1.8552 -0.2202 2.6665 9 1 2.8393 -1.0010 1.8747 10 1 2.0278 -0.5246 4.1096 11 1 0.4790 -0.5855 2.2448 12 6 2.5957 1.8920 -1.1055 13 8 3.0844 3.0016 -1.0770 14 6 2.6339 1.0843 -2.3772 15 6 3.4714 -0.1675 -2.3272 16 6 3.1239 -1.2727 -3.0813 17 7 3.8516 -2.3715 -3.0435 18 6 4.9314 -2.4629 -2.2919 19 6 5.3404 -1.3985 -1.5097 20 35 6.8907 -1.5392 -0.4358 21 6 4.6033 -0.2231 -1.5290 22 6 2.5847 1.8489 -3.7016 23 6 1.3652 1.0517 -3.2318 24 1 -0.3633 -1.0238 0.0894 25 1 -0.3633 0.5892 0.8420 26 1 -0.3633 0.4344 -0.9313 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.7244 1.9849 4.2339 30 1 2.2456 -1.2357 -3.7088 31 1 5.5026 -3.3794 -2.2872 32 1 4.9014 0.6264 -0.9325 33 1 2.5243 2.9362 -3.6529 34 1 3.1578 1.4463 -4.5367 35 1 1.1366 0.1250 -3.7583 36 1 0.5030 1.6148 -2.8745 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281909391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:54 Heat of formation + Delta-G solvation = 48.245784 kcal Electronic energy + Delta-G solvation = -22141.541835 eV Core-core repulsion = 18866.765344 eV Total energy + Delta-G solvation = -3274.776491 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.08816 -40.51238 -37.89232 -37.06828 -34.40004 -34.24759 -32.73518 -31.49637 -30.55410 -28.01973 -25.55936 -24.94965 -24.50988 -23.31622 -22.93405 -20.12992 -18.96325 -18.67881 -18.20799 -17.93677 -17.38785 -16.35694 -15.99526 -15.59907 -15.45472 -15.40420 -15.09046 -14.63344 -14.39615 -14.19503 -13.87993 -13.71994 -13.32298 -13.10096 -12.77127 -12.59636 -12.39579 -12.35404 -12.08459 -11.94702 -11.70379 -11.54745 -11.17995 -10.90659 -10.87509 -10.53336 -10.34967 -9.85204 -9.65506 -8.57186 -6.21552 -0.30424 -0.08873 0.38004 1.13719 1.24107 1.38453 1.77993 2.12218 2.35471 2.43625 2.86419 2.91742 3.20143 3.41623 3.61561 3.63224 3.72789 3.79083 3.90533 3.96901 4.07767 4.29955 4.36870 4.40441 4.67552 4.73981 4.75893 4.87816 4.90418 4.95629 5.05031 5.19717 5.34175 5.36182 5.54537 6.00225 6.46727 6.64591 6.89895 7.25358 7.84358 8.54229 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010783 B = 0.006671 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.001009 B = 4196.561525 C = 5461.540441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.057 3.943 3 N -0.459 5.459 4 C -0.344 4.344 5 H 0.045 0.955 6 C 0.019 3.981 7 N -0.894 5.894 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.302 1.302 11 H -0.216 1.216 12 C 0.497 3.503 13 O -0.615 6.615 14 C -0.136 4.136 15 C -0.080 4.080 16 C 0.125 3.875 17 N -0.469 5.469 18 C 0.130 3.870 19 C -0.147 4.147 20 Br -0.033 7.033 21 C -0.057 4.057 22 C -0.128 4.128 23 C -0.127 4.127 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.047 0.953 29 H 0.279 0.721 30 H 0.205 0.795 31 H 0.193 0.807 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 -15.705 -14.176 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.064 4.064 3 N -0.179 5.179 4 C -0.471 4.471 5 H 0.063 0.937 6 C -0.185 4.185 7 N -0.530 5.530 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.230 1.230 11 H -0.140 1.140 12 C 0.286 3.714 13 O -0.500 6.500 14 C -0.140 4.140 15 C -0.083 4.083 16 C -0.032 4.032 17 N -0.177 5.177 18 C -0.028 4.028 19 C -0.228 4.228 20 Br 0.051 6.949 21 C -0.085 4.085 22 C -0.166 4.166 23 C -0.163 4.163 24 H 0.107 0.893 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.221 0.779 31 H 0.210 0.790 32 H 0.127 0.873 33 H 0.105 0.895 34 H 0.150 0.850 35 H 0.169 0.831 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.221 -15.884 -14.028 21.307 hybrid contribution 0.296 1.201 1.606 2.027 sum 2.517 -14.683 -12.423 19.397 Atomic orbital electron populations 1.22163 0.93535 1.03002 1.02993 1.22467 0.97195 0.84433 1.02332 1.43606 1.51497 1.11571 1.11208 1.18455 1.49220 0.94783 0.84678 0.93702 1.26130 0.93035 1.03795 0.95589 1.70052 1.38309 1.40254 1.04352 0.86095 0.82245 0.78985 0.74839 1.19623 1.23048 1.13957 1.19863 0.79564 0.86909 0.85081 1.90543 1.50161 1.23971 1.85282 1.19875 1.05342 0.96804 0.91986 1.19858 0.94554 0.95548 0.98334 1.23307 0.98720 0.85925 0.95238 1.68006 1.05267 1.25531 1.18877 1.23224 0.92849 0.97262 0.89471 1.23028 0.98000 0.98393 1.03407 1.96739 1.32368 1.98346 1.67415 1.21426 0.93882 0.96659 0.96505 1.23160 1.01150 0.99149 0.93105 1.23434 0.90170 1.04074 0.98664 0.89349 0.93499 0.90554 0.88220 0.93584 0.91175 0.77904 0.79016 0.87341 0.89497 0.85000 0.83076 0.88212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.05 8.58 71.98 0.62 -4.43 16 2 C 0.06 2.17 5.24 86.38 0.45 2.62 16 3 N -0.46 -22.21 2.64 -635.54 -1.68 -23.89 16 4 C -0.34 -20.28 8.90 84.04 0.75 -19.54 16 5 H 0.05 3.07 8.03 -2.91 -0.02 3.05 16 6 C 0.02 1.09 5.50 84.93 0.47 1.56 16 7 N -0.89 -54.73 13.96 21.66 0.30 -54.43 16 8 Si 0.95 42.28 24.04 68.60 1.65 43.93 16 9 H -0.27 -11.55 6.41 99.48 0.64 -10.91 16 10 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.22 -8.18 5.28 99.48 0.52 -7.66 16 12 C 0.50 23.28 5.87 87.66 0.51 23.80 16 13 O -0.61 -35.51 16.66 -3.05 -0.05 -35.56 16 14 C -0.14 -4.31 1.36 -53.67 -0.07 -4.38 16 15 C -0.08 -2.27 3.34 -19.78 -0.07 -2.34 16 16 C 0.13 2.64 10.30 84.69 0.87 3.52 16 17 N -0.47 -10.43 10.36 -195.77 -2.03 -12.46 16 18 C 0.13 2.94 10.95 84.70 0.93 3.87 16 19 C -0.15 -4.11 6.25 22.40 0.14 -3.97 16 20 Br -0.03 -0.89 33.74 -20.37 -0.69 -1.58 16 21 C -0.06 -1.91 9.21 22.48 0.21 -1.70 16 22 C -0.13 -3.25 9.75 30.62 0.30 -2.95 16 23 C -0.13 -2.71 9.59 30.62 0.29 -2.41 16 24 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 25 H 0.05 1.73 6.76 -2.39 -0.02 1.72 16 26 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.10 3.22 4.45 -2.39 -0.01 3.21 16 28 H 0.05 1.92 1.51 -2.39 0.00 1.91 16 29 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 30 H 0.20 2.59 5.96 -2.91 -0.02 2.57 16 31 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.11 4.49 7.49 -2.91 -0.02 4.46 16 33 H 0.09 2.61 8.00 -2.39 -0.02 2.59 16 34 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.15 1.76 6.12 -2.38 -0.01 1.75 16 36 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -77.20 312.25 3.78 -73.42 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.87 Total: 16.91 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 5.40 Total: -6.35 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -3.41 Total: -90.77 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.05 Total: -35.56 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.65 Total: 43.93 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -0.69 Total: -1.58 kcal Total: -77.20 3.78 -73.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281909391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.666 kcal (2) G-P(sol) polarization free energy of solvation -77.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds