Wall clock time and date at job start Tue Mar 31 2020 20:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47686 * 349.74521 * 3 2 1 5 5 C 1.36931 * 119.99918 * 95.96686 * 4 3 2 6 6 H 1.08003 * 120.00203 * 162.62958 * 5 4 3 7 7 C 1.38816 * 120.00112 * 342.34470 * 5 4 3 8 8 N 1.31616 * 119.99685 * 338.85098 * 7 5 4 9 9 Si 1.86801 * 119.99836 * 158.84782 * 7 5 4 10 10 H 1.48498 * 109.47101 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.46869 * 210.00406 * 9 7 5 12 12 H 1.48499 * 109.46923 * 330.00027 * 9 7 5 13 13 C 1.46498 * 119.99957 * 275.96638 * 4 3 2 14 14 C 1.50707 * 109.47083 * 270.00069 * 13 4 3 15 15 C 1.38257 * 119.98731 * 269.72461 * 14 13 4 16 16 C 1.38192 * 120.01144 * 179.72509 * 15 14 13 17 17 C 1.38353 * 119.98961 * 0.54960 * 16 15 14 18 18 Br 1.89094 * 120.01219 * 179.70425 * 17 16 15 19 19 C 1.38303 * 119.97627 * 359.72290 * 17 16 15 20 20 N 1.48000 * 120.00629 * 180.02562 * 19 17 16 21 21 O 1.21800 * 120.00473 * 179.97438 * 20 19 17 22 22 O 1.21804 * 119.99873 * 359.97438 * 20 19 17 23 23 C 1.38214 * 119.99039 * 90.00097 * 14 13 4 24 24 H 4.40646 * 5.51336 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46936 * 229.73932 * 3 2 1 26 26 H 1.09001 * 109.46965 * 109.75217 * 3 2 1 27 27 H 0.97000 * 119.99694 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47085 * 29.99761 * 13 4 3 29 29 H 1.08992 * 109.47622 * 149.99668 * 13 4 3 30 30 H 1.08001 * 119.99719 * 0.02562 * 15 14 13 31 31 H 1.08006 * 120.01166 * 180.27398 * 16 15 14 32 32 H 1.07996 * 119.99667 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3582 0.2459 5 6 3.4799 -2.1627 -0.8071 6 1 4.0920 -3.0369 -0.6410 7 6 3.0379 -1.8580 -2.0873 8 7 1.9863 -1.0843 -2.2535 9 14 3.9357 -2.5462 -3.5738 10 1 3.3419 -3.8547 -3.9487 11 1 3.8072 -1.6002 -4.7113 12 1 5.3716 -2.7307 -3.2432 13 6 3.2552 -1.8563 1.6183 14 6 4.6285 -1.5365 2.1504 15 6 5.6617 -2.4399 1.9838 16 6 6.9225 -2.1448 2.4664 17 6 7.1481 -0.9500 3.1266 18 35 8.8710 -0.5491 3.7946 19 6 6.1128 -0.0491 3.2980 20 7 6.3535 1.2295 4.0035 21 8 5.4418 2.0231 4.1541 22 8 7.4633 1.4882 4.4337 23 6 4.8532 -0.3428 2.8098 24 1 -1.0498 -0.0004 0.0003 25 1 3.0090 0.6650 0.7842 26 1 3.0092 0.3481 -0.9672 27 1 1.6776 -0.8711 -3.1480 28 1 2.5023 -1.3787 2.2454 29 1 3.1042 -2.9357 1.6277 30 1 5.4847 -3.3744 1.4720 31 1 7.7307 -2.8486 2.3324 32 1 4.0446 0.3604 2.9440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282442894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:41 Heat of formation + Delta-G solvation = 123.785542 kcal Electronic energy + Delta-G solvation = -20617.434775 eV Core-core repulsion = 17210.100839 eV Total energy + Delta-G solvation = -3407.333936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.04112 -39.54827 -36.48378 -36.28346 -33.25048 -31.95813 -31.70847 -31.25506 -29.63158 -26.77951 -26.12178 -25.80340 -22.84743 -22.37673 -21.06601 -18.72234 -18.39454 -17.63394 -17.41809 -16.63223 -16.18901 -15.64195 -15.32027 -14.66296 -13.98719 -13.80049 -13.64830 -13.32081 -12.79593 -12.22139 -12.06738 -11.88794 -11.63926 -11.43121 -11.17631 -11.11650 -11.05774 -10.84672 -10.78068 -10.47242 -10.19506 -9.58062 -9.54071 -9.15380 -9.04481 -8.79697 -8.61024 -7.28920 -6.00164 -3.44696 -0.10354 0.84137 1.17283 1.46716 1.57720 3.21168 3.25258 3.32670 3.33175 4.03229 4.23037 4.25959 4.36172 4.61686 4.87503 4.94416 5.02968 5.19279 5.39910 5.45745 5.57660 5.68910 5.82244 5.88636 6.22944 6.30839 6.43892 6.51339 6.56238 7.04094 7.26604 7.51762 7.80396 8.02963 8.85670 9.04178 9.51389 9.95113 11.02760 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.003964 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.036230 B = 7061.110665 C = 8168.877661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.101 4.101 3 C 0.266 3.734 4 N -0.575 5.575 5 C -0.279 4.279 6 H 0.077 0.923 7 C 0.011 3.989 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.176 3.824 14 C -0.062 4.062 15 C -0.047 4.047 16 C -0.092 4.092 17 C -0.059 4.059 18 Br -0.002 7.002 19 C -0.027 4.027 20 N 0.028 4.972 21 O -0.171 6.171 22 O -0.143 6.143 23 C -0.043 4.043 24 H 0.192 0.808 25 H 0.036 0.964 26 H 0.098 0.902 27 H 0.258 0.742 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.153 -1.652 11.246 15.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.104 4.104 3 C 0.141 3.859 4 N -0.293 5.293 5 C -0.407 4.407 6 H 0.094 0.906 7 C -0.189 4.189 8 N -0.523 5.523 9 Si 0.729 3.271 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.204 1.204 13 C 0.048 3.952 14 C -0.067 4.067 15 C -0.067 4.067 16 C -0.113 4.113 17 C -0.141 4.141 18 Br 0.084 6.916 19 C -0.112 4.112 20 N 0.546 4.454 21 O -0.382 6.382 22 O -0.362 6.362 23 C -0.064 4.064 24 H 0.209 0.791 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.573 -2.046 10.943 15.353 hybrid contribution -0.192 -0.123 -1.063 1.087 sum 10.380 -2.169 9.880 14.494 Atomic orbital electron populations 1.24222 0.95376 1.04189 1.07283 1.24099 0.95141 0.96533 0.94577 1.17803 0.83058 0.84968 1.00047 1.44026 1.74053 1.11532 0.99704 1.19119 1.27260 1.08529 0.85796 0.90565 1.24934 0.96142 0.99642 0.98215 1.70122 1.21032 1.39534 1.21618 0.86349 0.79754 0.78309 0.82669 1.21277 1.21372 1.20389 1.19886 0.88377 0.99600 0.87333 1.21539 1.01118 0.91681 0.92382 1.21596 0.91045 1.00032 0.94034 1.21200 0.98729 0.94373 0.96952 1.21597 0.92596 0.96804 1.03101 1.96827 1.14807 1.94751 1.85194 1.20800 0.96626 0.86975 1.06829 1.43567 1.00521 1.02171 0.99169 1.94537 1.37500 1.43910 1.62268 1.94647 1.09554 1.81707 1.50270 1.21042 0.94105 0.97566 0.93655 0.79094 0.94570 0.88395 0.93179 0.92249 0.90955 0.83295 0.83300 0.82751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.25 19.25 29.55 0.57 -5.68 16 2 C -0.10 -2.29 11.58 -37.12 -0.43 -2.72 16 3 C 0.27 5.81 5.41 -6.83 -0.04 5.77 16 4 N -0.58 -12.28 2.47 -177.95 -0.44 -12.72 16 5 C -0.28 -6.61 9.65 -15.06 -0.15 -6.76 16 6 H 0.08 1.72 7.92 -52.48 -0.42 1.30 16 7 C 0.01 0.28 4.87 -17.43 -0.08 0.19 16 8 N -0.88 -23.40 9.47 55.49 0.53 -22.88 16 9 Si 0.90 19.97 29.60 -169.99 -5.03 14.94 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 C 0.18 2.95 5.80 -5.19 -0.03 2.92 16 14 C -0.06 -0.91 5.46 -104.62 -0.57 -1.48 16 15 C -0.05 -0.60 9.70 -39.59 -0.38 -0.99 16 16 C -0.09 -1.09 9.79 -39.56 -0.39 -1.48 16 17 C -0.06 -0.81 6.22 -39.52 -0.25 -1.05 16 18 Br 0.00 -0.02 30.31 -68.01 -2.06 -2.08 16 19 C -0.03 -0.41 6.85 -79.93 -0.55 -0.96 16 20 N 0.03 0.46 4.45 33.97 0.15 0.61 16 21 O -0.17 -2.91 18.45 -29.46 -0.54 -3.45 16 22 O -0.14 -2.34 15.52 -29.46 -0.46 -2.80 16 23 C -0.04 -0.64 9.21 -39.59 -0.36 -1.00 16 24 H 0.19 3.41 7.80 -54.10 -0.42 2.99 16 25 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 26 H 0.10 2.39 6.43 -51.93 -0.33 2.05 16 27 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.06 0.95 8.02 -51.93 -0.42 0.53 16 29 H 0.07 1.16 7.98 -51.93 -0.41 0.74 16 30 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.15 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.15 2.21 7.61 -52.49 -0.40 1.81 16 LS Contribution 313.71 15.07 4.73 4.73 Total: -1.00 -27.79 313.71 -8.59 -36.38 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -2.80 Total: 0.52 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -2.66 Total: -13.24 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.24 Total: -34.99 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -1.00 Total: -6.25 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.94 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -2.06 Total: -2.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.79 -8.59 -36.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282442894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.170 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds