Wall clock time and date at job start Tue Mar 31 2020 20:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47686 * 349.74521 * 3 2 1 5 5 C 1.36931 * 119.99918 * 95.96686 * 4 3 2 6 6 H 1.08003 * 120.00203 * 162.62958 * 5 4 3 7 7 C 1.38816 * 120.00112 * 342.34470 * 5 4 3 8 8 N 1.31616 * 119.99685 * 338.85098 * 7 5 4 9 9 Si 1.86801 * 119.99836 * 158.84782 * 7 5 4 10 10 H 1.48498 * 109.47101 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.46869 * 210.00406 * 9 7 5 12 12 H 1.48499 * 109.46923 * 330.00027 * 9 7 5 13 13 C 1.46498 * 119.99957 * 275.96638 * 4 3 2 14 14 C 1.50707 * 109.47083 * 270.00069 * 13 4 3 15 15 C 1.38257 * 119.98731 * 269.72461 * 14 13 4 16 16 C 1.38192 * 120.01144 * 179.72509 * 15 14 13 17 17 C 1.38353 * 119.98961 * 0.54960 * 16 15 14 18 18 Br 1.89094 * 120.01219 * 179.70425 * 17 16 15 19 19 C 1.38303 * 119.97627 * 359.72290 * 17 16 15 20 20 N 1.48000 * 120.00629 * 180.02562 * 19 17 16 21 21 O 1.21800 * 120.00473 * 179.97438 * 20 19 17 22 22 O 1.21804 * 119.99873 * 359.97438 * 20 19 17 23 23 C 1.38214 * 119.99039 * 90.00097 * 14 13 4 24 24 H 4.40646 * 5.51336 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46936 * 229.73932 * 3 2 1 26 26 H 1.09001 * 109.46965 * 109.75217 * 3 2 1 27 27 H 0.97000 * 119.99694 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47085 * 29.99761 * 13 4 3 29 29 H 1.08992 * 109.47622 * 149.99668 * 13 4 3 30 30 H 1.08001 * 119.99719 * 0.02562 * 15 14 13 31 31 H 1.08006 * 120.01166 * 180.27398 * 16 15 14 32 32 H 1.07996 * 119.99667 * 0.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1351 -1.3582 0.2459 5 6 3.4799 -2.1627 -0.8071 6 1 4.0920 -3.0369 -0.6410 7 6 3.0379 -1.8580 -2.0873 8 7 1.9863 -1.0843 -2.2535 9 14 3.9357 -2.5462 -3.5738 10 1 3.3419 -3.8547 -3.9487 11 1 3.8072 -1.6002 -4.7113 12 1 5.3716 -2.7307 -3.2432 13 6 3.2552 -1.8563 1.6183 14 6 4.6285 -1.5365 2.1504 15 6 5.6617 -2.4399 1.9838 16 6 6.9225 -2.1448 2.4664 17 6 7.1481 -0.9500 3.1266 18 35 8.8710 -0.5491 3.7946 19 6 6.1128 -0.0491 3.2980 20 7 6.3535 1.2295 4.0035 21 8 5.4418 2.0231 4.1541 22 8 7.4633 1.4882 4.4337 23 6 4.8532 -0.3428 2.8098 24 1 -1.0498 -0.0004 0.0003 25 1 3.0090 0.6650 0.7842 26 1 3.0092 0.3481 -0.9672 27 1 1.6776 -0.8711 -3.1480 28 1 2.5023 -1.3787 2.2454 29 1 3.1042 -2.9357 1.6277 30 1 5.4847 -3.3744 1.4720 31 1 7.7307 -2.8486 2.3324 32 1 4.0446 0.3604 2.9440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282442894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:40 Heat of formation + Delta-G solvation = 111.882225 kcal Electronic energy + Delta-G solvation = -20617.950942 eV Core-core repulsion = 17210.100839 eV Total energy + Delta-G solvation = -3407.850102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.28292 -40.68856 -37.93596 -37.67099 -34.55795 -33.49415 -33.01840 -32.67327 -30.91490 -28.27840 -27.55911 -27.22230 -24.06720 -23.77214 -22.39435 -19.95560 -19.65875 -19.32655 -18.67083 -18.20064 -17.32296 -17.01990 -16.80305 -15.79400 -15.60218 -15.31186 -15.09085 -14.52344 -14.20503 -13.45439 -13.38207 -13.27932 -13.19761 -12.88071 -12.64517 -12.46916 -12.35922 -12.31241 -12.22965 -12.03753 -11.86171 -10.83841 -10.78094 -10.63595 -10.62462 -10.34711 -9.97685 -9.01968 -7.84463 -5.28185 -1.29572 -0.23765 0.08056 0.27978 0.43255 1.47793 1.53099 1.58777 2.09307 2.39172 2.51386 2.59105 3.17879 3.28386 3.51251 3.79821 3.82557 3.91697 3.94277 4.09885 4.32833 4.53269 4.62885 4.79241 4.84593 4.99861 5.10675 5.27754 5.29092 5.41108 5.62698 5.69027 6.24776 6.51363 7.05583 7.33908 7.77610 8.19935 9.17234 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.003964 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.036230 B = 7061.110665 C = 8168.877661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.289 4.289 2 C -0.135 4.135 3 C 0.270 3.730 4 N -0.589 5.589 5 C -0.267 4.267 6 H 0.091 0.909 7 C -0.044 4.044 8 N -0.914 5.914 9 Si 0.954 3.046 10 H -0.289 1.289 11 H -0.304 1.304 12 H -0.267 1.267 13 C 0.178 3.822 14 C -0.069 4.069 15 C -0.037 4.037 16 C -0.079 4.079 17 C -0.062 4.062 18 Br 0.010 6.990 19 C -0.043 4.043 20 N 0.028 4.972 21 O -0.200 6.200 22 O -0.139 6.139 23 C -0.046 4.046 24 H 0.221 0.779 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.245 0.755 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.171 0.829 31 H 0.184 0.816 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.581 -3.279 11.983 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 C -0.138 4.138 3 C 0.145 3.855 4 N -0.308 5.308 5 C -0.396 4.396 6 H 0.109 0.891 7 C -0.240 4.240 8 N -0.558 5.558 9 Si 0.784 3.216 10 H -0.216 1.216 11 H -0.231 1.231 12 H -0.192 1.192 13 C 0.051 3.949 14 C -0.073 4.073 15 C -0.056 4.056 16 C -0.099 4.099 17 C -0.144 4.144 18 Br 0.096 6.904 19 C -0.128 4.128 20 N 0.542 4.458 21 O -0.405 6.405 22 O -0.360 6.360 23 C -0.066 4.066 24 H 0.238 0.762 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.188 0.812 31 H 0.202 0.798 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.995 -3.665 11.731 17.174 hybrid contribution -0.550 0.323 -1.163 1.326 sum 11.445 -3.342 10.568 15.933 Atomic orbital electron populations 1.25020 0.96401 1.03206 1.06141 1.24558 0.96043 0.97563 0.95634 1.17659 0.82913 0.85870 0.99044 1.44161 1.74399 1.11134 1.01104 1.19524 1.25568 1.08281 0.86251 0.89133 1.25552 0.97080 1.00940 1.00444 1.70278 1.22838 1.41891 1.20818 0.85487 0.79311 0.76933 0.79896 1.21648 1.23104 1.19211 1.19961 0.89716 1.00037 0.85139 1.21191 1.00314 0.92232 0.93591 1.21873 0.90698 1.00180 0.92896 1.21568 0.99259 0.93940 0.95174 1.21902 0.92735 0.96966 1.02798 1.96850 1.13673 1.94805 1.85030 1.20892 0.97411 0.86697 1.07805 1.43773 1.00317 1.02584 0.99079 1.94536 1.37683 1.44784 1.63503 1.94621 1.09527 1.81874 1.50009 1.21020 0.94124 0.97699 0.93773 0.76197 0.92606 0.91527 0.94501 0.91857 0.89907 0.81206 0.79838 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.24 19.25 74.32 1.43 -10.81 16 2 C -0.14 -6.18 11.58 31.12 0.36 -5.82 16 3 C 0.27 11.90 5.41 84.57 0.46 12.36 16 4 N -0.59 -24.59 2.47 -716.92 -1.77 -26.36 16 5 C -0.27 -12.32 9.65 84.04 0.81 -11.51 16 6 H 0.09 3.83 7.92 -2.91 -0.02 3.80 16 7 C -0.04 -2.18 4.87 84.86 0.41 -1.77 16 8 N -0.91 -49.37 9.47 21.65 0.21 -49.17 16 9 Si 0.95 41.02 29.60 68.60 2.03 43.06 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 13 C 0.18 5.63 5.80 85.64 0.50 6.13 16 14 C -0.07 -1.86 5.46 -19.86 -0.11 -1.97 16 15 C -0.04 -0.81 9.70 22.26 0.22 -0.59 16 16 C -0.08 -1.57 9.79 22.29 0.22 -1.35 16 17 C -0.06 -1.53 6.22 22.31 0.14 -1.39 16 18 Br 0.01 0.23 30.31 -20.37 -0.62 -0.39 16 19 C -0.04 -1.23 6.85 36.40 0.25 -0.98 16 20 N 0.03 0.89 4.45 -46.43 -0.21 0.69 16 21 O -0.20 -6.85 18.45 18.89 0.35 -6.51 16 22 O -0.14 -4.39 15.52 18.88 0.29 -4.10 16 23 C -0.05 -1.29 9.21 22.27 0.21 -1.09 16 24 H 0.22 7.54 7.80 -4.43 -0.03 7.50 16 25 H 0.06 2.16 8.12 -2.39 -0.02 2.14 16 26 H 0.07 3.35 6.43 -2.39 -0.02 3.33 16 27 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 28 H 0.06 1.95 8.02 -2.39 -0.02 1.93 16 29 H 0.08 2.44 7.98 -2.39 -0.02 2.42 16 30 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.18 2.38 8.06 -2.91 -0.02 2.35 16 32 H 0.15 4.29 7.61 -2.91 -0.02 4.27 16 Total: -1.00 -59.42 313.71 6.32 -53.10 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.15 Total: 8.47 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.89 Total: -18.79 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.78 Total: -74.85 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.64 Total: -10.61 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 35 Polarization: 0.23 SS G_CDS: -0.62 Total: -0.39 kcal Total: -59.42 6.32 -53.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282442894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.984 kcal (2) G-P(sol) polarization free energy of solvation -59.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds