Wall clock time and date at job start Tue Mar 31 2020 20:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47342 * 317.90509 * 3 2 1 5 5 C 1.36906 * 120.00147 * 83.29893 * 4 3 2 6 6 H 1.07999 * 120.00143 * 166.19560 * 5 4 3 7 7 C 1.39017 * 119.99696 * 346.19549 * 5 4 3 8 8 N 1.31376 * 120.00395 * 359.70731 * 7 5 4 9 9 Si 1.86802 * 119.99949 * 179.70473 * 7 5 4 10 10 H 1.48495 * 109.47101 * 59.99936 * 9 7 5 11 11 H 1.48504 * 109.47369 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47046 * 300.00163 * 9 7 5 13 13 C 1.34780 * 119.99847 * 263.29688 * 4 3 2 14 14 O 1.21622 * 119.99915 * 184.37791 * 13 4 3 15 15 C 1.47508 * 120.00276 * 4.38130 * 13 4 3 16 16 C 1.40344 * 120.49978 * 300.67668 * 15 13 4 17 17 C 1.38010 * 118.34206 * 179.97438 * 16 15 13 18 18 Br 1.89101 * 120.37269 * 180.02562 * 17 16 15 19 19 C 1.39260 * 119.25396 * 359.97438 * 17 16 15 20 20 O 1.35520 * 119.52478 * 179.97438 * 19 17 16 21 21 N 1.32391 * 120.95261 * 0.25813 * 19 17 16 22 22 C 1.31672 * 121.81480 * 359.47059 * 21 19 17 23 23 C 1.50695 * 119.68283 * 180.28842 * 22 21 19 24 24 H 4.40639 * 5.51518 * 179.97438 * 4 1 2 25 25 H 1.09008 * 109.47056 * 197.90611 * 3 2 1 26 26 H 1.08999 * 109.47460 * 77.90849 * 3 2 1 27 27 H 0.97001 * 120.00575 * 179.97438 * 8 7 5 28 28 H 1.08000 * 120.82840 * 359.95034 * 16 15 13 29 29 H 0.96705 * 113.99636 * 90.00415 * 20 19 17 30 30 H 1.09000 * 109.47350 * 274.60664 * 23 22 21 31 31 H 1.09006 * 109.46972 * 34.61270 * 23 22 21 32 32 H 1.09000 * 109.46941 * 154.60447 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -1.0240 0.9259 5 6 3.2331 -2.3265 0.5157 6 1 3.7931 -3.0374 1.1050 7 6 2.6121 -2.7338 -0.6594 8 7 1.9260 -1.8704 -1.3734 9 14 2.7531 -4.5091 -1.2235 10 1 2.1813 -5.4049 -0.1864 11 1 2.0078 -4.6850 -2.4958 12 1 4.1830 -4.8485 -1.4370 13 6 3.4877 -0.6845 2.1816 14 8 3.9681 -1.5187 2.9248 15 6 3.2913 0.6989 2.6544 16 6 3.9148 1.7713 1.9980 17 6 3.6998 3.0474 2.4777 18 35 4.5109 4.5343 1.6368 19 6 2.8781 3.2278 3.5875 20 8 2.6637 4.4784 4.0635 21 7 2.3078 2.1946 4.1876 22 6 2.4813 0.9612 3.7605 23 6 1.8036 -0.1786 4.4763 24 1 -1.0499 -0.0001 0.0004 25 1 3.0088 0.9788 0.3160 26 1 3.0094 -0.2144 -1.0048 27 1 1.4930 -2.1545 -2.1935 28 1 4.5473 1.6022 1.1391 29 1 1.9010 4.9237 3.6696 30 1 2.4204 -0.4982 5.3162 31 1 0.8313 0.1498 4.8437 32 1 1.6689 -1.0119 3.7867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285927811.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:12 Heat of formation + Delta-G solvation = 26.959178 kcal Electronic energy + Delta-G solvation = -21210.423857 eV Core-core repulsion = 17798.891215 eV Total energy + Delta-G solvation = -3411.532642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.06827 -40.32644 -38.24087 -37.22091 -34.89105 -33.92233 -33.17341 -32.67217 -31.68674 -28.62944 -28.13073 -26.78527 -24.98499 -23.61473 -21.43677 -19.92290 -19.77737 -18.62732 -18.43550 -17.94715 -17.18426 -16.78287 -16.06927 -15.73480 -15.34685 -15.25056 -15.00040 -14.63124 -14.24250 -14.05674 -13.72010 -13.50006 -13.34076 -13.15193 -12.88781 -12.83629 -12.52254 -12.21996 -12.16320 -11.47619 -11.43535 -11.16025 -10.90120 -10.85615 -10.57107 -10.35291 -9.94373 -9.77844 -8.28113 -5.98750 -0.53677 -0.25301 0.32207 1.36467 1.43219 1.52048 1.75186 1.96936 2.21603 2.30194 2.42385 2.46242 2.95439 3.07690 3.32381 3.46610 3.64065 3.90986 4.01200 4.14129 4.29753 4.49429 4.58269 4.62144 4.82891 4.88153 5.09365 5.20660 5.40977 5.43949 5.93631 6.34991 6.37162 6.60931 7.03971 7.17166 7.29509 7.82217 8.59973 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.004413 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.161204 B = 6342.892140 C = 6930.016108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.130 4.130 3 C 0.229 3.771 4 N -0.432 5.432 5 C -0.340 4.340 6 H 0.086 0.914 7 C 0.004 3.996 8 N -0.872 5.872 9 Si 0.992 3.008 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.268 1.268 13 C 0.484 3.516 14 O -0.612 6.612 15 C -0.166 4.166 16 C -0.012 4.012 17 C -0.171 4.171 18 Br 0.002 6.998 19 C 0.355 3.645 20 O -0.467 6.467 21 N -0.501 5.501 22 C 0.196 3.804 23 C -0.098 4.098 24 H 0.229 0.771 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.275 0.725 28 H 0.162 0.838 29 H 0.425 0.575 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 14.021 1.826 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 C -0.132 4.132 3 C 0.107 3.893 4 N -0.148 5.148 5 C -0.467 4.467 6 H 0.104 0.896 7 C -0.199 4.199 8 N -0.510 5.510 9 Si 0.816 3.184 10 H -0.204 1.204 11 H -0.196 1.196 12 H -0.193 1.193 13 C 0.273 3.727 14 O -0.499 6.499 15 C -0.172 4.172 16 C -0.039 4.039 17 C -0.254 4.254 18 Br 0.087 6.913 19 C 0.172 3.828 20 O -0.278 6.278 21 N -0.221 5.221 22 C 0.058 3.942 23 C -0.155 4.155 24 H 0.245 0.755 25 H 0.100 0.900 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.180 0.820 29 H 0.288 0.712 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.094 14.258 2.679 14.508 hybrid contribution -0.210 -1.343 -1.193 1.809 sum -0.304 12.915 1.486 13.004 Atomic orbital electron populations 1.25012 0.96274 1.03983 1.03195 1.23216 0.94758 0.97247 0.98014 1.18774 0.85091 0.89493 0.95948 1.43843 1.53722 1.08286 1.08959 1.19716 1.32917 0.86137 1.07938 0.89592 1.26036 0.94395 1.03552 0.95920 1.70019 1.31023 1.34703 1.15223 0.84995 0.78725 0.77190 0.77475 1.20350 1.19641 1.19286 1.17854 0.85507 0.87366 0.82007 1.90620 1.50917 1.52464 1.55909 1.20889 1.02208 0.94606 0.99536 1.21757 0.95079 0.89453 0.97625 1.22921 1.07206 0.94859 1.00365 1.96719 1.79741 1.36708 1.78180 1.18981 0.90801 0.86277 0.86728 1.84697 1.54076 1.21463 1.67543 1.67189 1.24819 0.98965 1.31087 1.21281 0.90945 0.91739 0.90246 1.20745 1.01297 0.93137 1.00331 0.75462 0.90024 0.87040 0.91437 0.82027 0.71235 0.88923 0.88163 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.55 19.24 74.32 1.43 -9.12 16 2 C -0.13 -5.69 11.00 31.12 0.34 -5.35 16 3 C 0.23 9.88 5.09 84.57 0.43 10.31 16 4 N -0.43 -21.18 2.60 -649.05 -1.69 -22.86 16 5 C -0.34 -18.03 9.46 84.09 0.80 -17.24 16 6 H 0.09 4.86 7.22 -2.91 -0.02 4.84 16 7 C 0.00 0.19 5.36 84.95 0.45 0.64 16 8 N -0.87 -42.27 7.99 21.67 0.17 -42.09 16 9 Si 0.99 40.22 29.55 68.60 2.03 42.25 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 12 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 13 C 0.48 23.07 5.83 86.69 0.51 23.58 16 14 O -0.61 -33.21 15.97 -4.10 -0.07 -33.27 16 15 C -0.17 -6.48 4.97 -20.00 -0.10 -6.58 16 16 C -0.01 -0.38 7.44 22.73 0.17 -0.21 16 17 C -0.17 -4.81 6.25 22.46 0.14 -4.67 16 18 Br 0.00 0.05 33.18 -20.37 -0.68 -0.63 16 19 C 0.35 10.13 7.74 84.85 0.66 10.79 16 20 O -0.47 -10.31 12.89 -88.23 -1.14 -11.45 16 21 N -0.50 -16.41 10.28 -295.78 -3.04 -19.45 16 22 C 0.20 7.12 6.82 42.91 0.29 7.41 16 23 C -0.10 -3.34 9.54 71.23 0.68 -2.66 16 24 H 0.23 7.10 7.80 -4.42 -0.03 7.07 16 25 H 0.08 3.03 4.20 -2.38 -0.01 3.02 16 26 H 0.11 5.09 6.35 -2.39 -0.02 5.08 16 27 H 0.27 12.72 8.31 -92.71 -0.77 11.95 16 28 H 0.16 4.86 7.39 -2.91 -0.02 4.84 16 29 H 0.42 5.13 9.06 -74.05 -0.67 4.46 16 30 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.10 2.85 8.14 -2.38 -0.02 2.83 16 32 H 0.06 2.38 6.72 -2.39 -0.02 2.36 16 Total: -1.00 -63.58 305.85 1.91 -61.67 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.52 Total: 18.95 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.80 Total: 6.89 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -4.56 Total: -84.41 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.20 Total: -44.72 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.68 Total: -0.63 kcal Total: -63.58 1.91 -61.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285927811.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.629 kcal (2) G-P(sol) polarization free energy of solvation -63.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds