Wall clock time and date at job start Tue Mar 31 2020 20:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 11 11 O 1.42893 * 109.46971 * 60.00001 * 9 7 2 12 12 C 1.53008 * 109.46847 * 180.02562 * 9 7 2 13 13 N 1.46499 * 109.47013 * 175.00065 * 12 9 7 14 14 N 1.28732 * 125.33925 * 269.69412 * 13 12 9 15 15 N 1.28988 * 108.94297 * 179.86278 * 14 13 12 16 16 C 1.34047 * 107.26729 * 0.39150 * 15 14 13 17 17 C 1.48459 * 126.67468 * 179.74328 * 16 15 14 18 18 C 1.39312 * 120.10501 * 179.74693 * 17 16 15 19 19 C 1.38015 * 119.88679 * 179.81157 * 18 17 16 20 20 C 1.38406 * 120.10616 * 0.43909 * 19 18 17 21 21 Br 1.89099 * 119.89098 * 179.76592 * 20 19 18 22 22 C 1.38404 * 120.21859 * 359.78876 * 20 19 18 23 23 C 1.38011 * 120.10783 * 0.02562 * 22 20 19 24 24 N 1.28870 * 125.34107 * 89.99191 * 13 12 9 25 25 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 26 26 H 0.96702 * 114.00232 * 60.00452 * 11 9 7 27 27 H 1.09003 * 109.46541 * 294.99747 * 12 9 7 28 28 H 1.08997 * 109.47444 * 54.99667 * 12 9 7 29 29 H 1.07998 * 120.05449 * 0.02562 * 18 17 16 30 30 H 1.08000 * 119.94183 * 180.20610 * 19 18 17 31 31 H 1.08004 * 119.94686 * 179.97438 * 22 20 19 32 32 H 1.08003 * 120.05669 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5750 -1.1665 12 6 2.2454 -3.6621 0.0018 13 7 1.5168 -4.9273 0.1222 14 7 1.2201 -5.5133 1.2293 15 7 0.5766 -6.6004 0.9684 16 6 0.4785 -6.6943 -0.3651 17 6 -0.1767 -7.7841 -1.1314 18 6 -0.2037 -7.7409 -2.5236 19 6 -0.8106 -8.7583 -3.2316 20 6 -1.3998 -9.8157 -2.5604 21 35 -2.2355 -11.2031 -3.5363 22 6 -1.3797 -9.8606 -1.1772 23 6 -0.7719 -8.8499 -0.4604 24 7 1.0771 -5.6311 -0.8638 25 1 -0.4850 -0.8401 0.0004 26 1 0.9224 -2.5299 -1.9975 27 1 2.8122 -3.6563 -0.9292 28 1 2.9289 -3.5548 0.8440 29 1 0.2526 -6.9144 -3.0480 30 1 -0.8291 -8.7274 -4.3110 31 1 -1.8412 -10.6876 -0.6579 32 1 -0.7571 -8.8856 0.6189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287521244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:27 Heat of formation + Delta-G solvation = 93.658045 kcal Electronic energy + Delta-G solvation = -19983.466763 eV Core-core repulsion = 16607.119152 eV Total energy + Delta-G solvation = -3376.347611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.96956 -39.41628 -36.93193 -34.43880 -33.52868 -32.40944 -32.07832 -31.34808 -30.05395 -28.74318 -25.60209 -24.16135 -23.50510 -22.47120 -21.45823 -21.28521 -18.08848 -17.54991 -16.92185 -16.51809 -15.73636 -15.37525 -14.94575 -14.50572 -14.03360 -13.93287 -13.77411 -13.62526 -13.48394 -13.04118 -12.45993 -12.08631 -11.68414 -11.61689 -11.50882 -11.38861 -10.93674 -10.88864 -10.70296 -10.55985 -10.45754 -10.33972 -10.28071 -9.63565 -9.30975 -8.72737 -8.68466 -8.38769 -6.62408 -4.51508 0.48528 1.05873 1.32012 1.61892 2.30873 2.43933 3.30420 3.32961 3.45602 3.52556 3.80282 4.31564 4.32232 4.63429 4.66247 5.01851 5.05214 5.12723 5.31717 5.37192 5.39397 5.51907 5.57107 5.72583 5.88397 5.91942 5.94067 6.11339 6.25155 6.45972 6.49024 6.96142 7.53158 8.02747 8.55721 8.62896 8.73915 9.35936 10.77960 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.032077 B = 0.002195 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.690445 B =12751.152773 C =13279.747502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.040 3.960 3 Si 1.077 2.923 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.656 4.656 8 H 0.059 0.941 9 C 0.207 3.793 10 H 0.062 0.938 11 O -0.573 6.573 12 C 0.098 3.902 13 N -0.106 5.106 14 N -0.065 5.065 15 N -0.286 5.286 16 C 0.177 3.823 17 C 0.021 3.979 18 C -0.078 4.078 19 C -0.092 4.092 20 C -0.083 4.083 21 Br -0.053 7.053 22 C -0.092 4.092 23 C -0.078 4.078 24 N -0.281 5.281 25 H 0.286 0.714 26 H 0.360 0.640 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 -21.263 -7.031 22.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.171 4.171 3 Si 0.904 3.096 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.694 4.694 8 H 0.078 0.922 9 C 0.147 3.853 10 H 0.080 0.920 11 O -0.378 6.378 12 C -0.021 4.021 13 N -0.019 5.019 14 N -0.057 5.057 15 N -0.156 5.156 16 C -0.102 4.102 17 C 0.018 3.982 18 C -0.099 4.099 19 C -0.112 4.112 20 C -0.163 4.163 21 Br 0.033 6.967 22 C -0.112 4.112 23 C -0.099 4.099 24 N -0.133 5.133 25 H 0.098 0.902 26 H 0.205 0.795 27 H 0.128 0.872 28 H 0.136 0.864 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.874 -19.797 -6.367 20.880 hybrid contribution 0.766 -1.421 -0.500 1.690 sum -1.109 -21.218 -6.868 22.329 Atomic orbital electron populations 1.70592 1.07016 1.32539 1.41276 1.25884 0.96370 1.02660 0.92171 0.83443 0.74370 0.74443 0.77314 1.21304 1.21059 1.21019 1.22215 0.94633 0.91111 1.61441 0.92229 1.19992 0.88574 0.89811 0.86886 0.91998 1.86558 1.38988 1.96186 1.16019 1.23772 0.96291 0.76234 1.05789 1.50508 1.33079 1.18109 1.00198 1.78890 1.12231 1.02298 1.12300 1.75911 1.15535 1.11218 1.12964 1.23427 1.02414 0.95188 0.89156 1.17394 0.97704 0.91190 0.91938 1.21257 0.97702 0.98496 0.92476 1.21036 0.97100 0.92464 1.00558 1.21916 1.03599 0.95987 0.94799 1.96722 1.79303 1.47018 1.73697 1.21024 0.99222 0.99226 0.91753 1.21214 0.95568 0.91988 1.01118 1.74836 1.15293 1.04634 1.18528 0.90230 0.79452 0.87219 0.86409 0.83851 0.84343 0.84349 0.83768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.48 13.53 55.43 0.75 -24.73 16 2 C 0.04 1.05 5.40 -17.82 -0.10 0.95 16 3 Si 1.08 23.20 29.90 -169.99 -5.08 18.12 16 4 H -0.29 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.66 -16.31 8.76 -34.44 -0.30 -16.61 16 8 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 9 C 0.21 4.72 2.67 -27.88 -0.07 4.65 16 10 H 0.06 1.60 8.01 -51.93 -0.42 1.19 16 11 O -0.57 -13.41 11.96 -35.23 -0.42 -13.83 16 12 C 0.10 1.78 6.17 -4.04 -0.02 1.75 16 13 N -0.11 -2.00 3.94 -10.63 -0.04 -2.04 16 14 N -0.07 -1.28 13.23 60.35 0.80 -0.48 16 15 N -0.29 -5.30 12.23 32.16 0.39 -4.91 16 16 C 0.18 3.06 7.94 -156.30 -1.24 1.82 16 17 C 0.02 0.29 5.88 -104.89 -0.62 -0.32 16 18 C -0.08 -0.94 9.70 -39.26 -0.38 -1.32 16 19 C -0.09 -0.94 9.77 -39.60 -0.39 -1.32 16 20 C -0.08 -0.83 6.23 -39.46 -0.25 -1.08 16 21 Br -0.05 -0.47 33.69 -68.01 -2.29 -2.76 16 22 C -0.09 -0.92 9.77 -39.60 -0.39 -1.30 16 23 C -0.08 -0.91 9.70 -39.27 -0.38 -1.29 16 24 N -0.28 -5.14 11.85 32.17 0.38 -4.76 16 25 H 0.29 8.49 6.47 -40.82 -0.26 8.22 16 26 H 0.36 7.36 9.04 45.56 0.41 7.77 16 27 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 28 H 0.12 1.95 8.14 -51.93 -0.42 1.53 16 29 H 0.14 1.68 7.88 -52.49 -0.41 1.27 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 32 H 0.14 1.60 7.89 -52.48 -0.41 1.18 16 LS Contribution 313.08 15.07 4.72 4.72 Total: -1.00 -29.71 313.08 -6.92 -36.63 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -1.99 Total: 8.13 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -4.14 Total: -14.08 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 2.28 Total: -36.92 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.42 Total: -13.83 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.08 Total: 18.12 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.76 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.71 -6.92 -36.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287521244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.287 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds