Wall clock time and date at job start Tue Mar 31 2020 20:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48503 * 109.46845 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 299.99578 * 3 2 1 6 6 H 1.48498 * 109.47295 * 60.00185 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99722 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.46844 * 299.99724 * 9 7 2 11 11 O 1.42893 * 109.46971 * 60.00001 * 9 7 2 12 12 C 1.53008 * 109.46847 * 180.02562 * 9 7 2 13 13 N 1.46499 * 109.47013 * 175.00065 * 12 9 7 14 14 N 1.28732 * 125.33925 * 269.69412 * 13 12 9 15 15 N 1.28988 * 108.94297 * 179.86278 * 14 13 12 16 16 C 1.34047 * 107.26729 * 0.39150 * 15 14 13 17 17 C 1.48459 * 126.67468 * 179.74328 * 16 15 14 18 18 C 1.39312 * 120.10501 * 179.74693 * 17 16 15 19 19 C 1.38015 * 119.88679 * 179.81157 * 18 17 16 20 20 C 1.38406 * 120.10616 * 0.43909 * 19 18 17 21 21 Br 1.89099 * 119.89098 * 179.76592 * 20 19 18 22 22 C 1.38404 * 120.21859 * 359.78876 * 20 19 18 23 23 C 1.38011 * 120.10783 * 0.02562 * 22 20 19 24 24 N 1.28870 * 125.34107 * 89.99191 * 13 12 9 25 25 H 0.97000 * 119.99651 * 180.02562 * 1 2 3 26 26 H 0.96702 * 114.00232 * 60.00452 * 11 9 7 27 27 H 1.09003 * 109.46541 * 294.99747 * 12 9 7 28 28 H 1.08997 * 109.47444 * 54.99667 * 12 9 7 29 29 H 1.07998 * 120.05449 * 0.02562 * 18 17 16 30 30 H 1.08000 * 119.94183 * 180.20610 * 19 18 17 31 31 H 1.08004 * 119.94686 * 179.97438 * 22 20 19 32 32 H 1.08003 * 120.05669 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 8 0.4300 -2.5750 -1.1665 12 6 2.2454 -3.6621 0.0018 13 7 1.5168 -4.9273 0.1222 14 7 1.2201 -5.5133 1.2293 15 7 0.5766 -6.6004 0.9684 16 6 0.4785 -6.6943 -0.3651 17 6 -0.1767 -7.7841 -1.1314 18 6 -0.2037 -7.7409 -2.5236 19 6 -0.8106 -8.7583 -3.2316 20 6 -1.3998 -9.8157 -2.5604 21 35 -2.2355 -11.2031 -3.5363 22 6 -1.3797 -9.8606 -1.1772 23 6 -0.7719 -8.8499 -0.4604 24 7 1.0771 -5.6311 -0.8638 25 1 -0.4850 -0.8401 0.0004 26 1 0.9224 -2.5299 -1.9975 27 1 2.8122 -3.6563 -0.9292 28 1 2.9289 -3.5548 0.8440 29 1 0.2526 -6.9144 -3.0480 30 1 -0.8291 -8.7274 -4.3110 31 1 -1.8412 -10.6876 -0.6579 32 1 -0.7571 -8.8856 0.6189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287521244.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:26 Heat of formation + Delta-G solvation = 73.959477 kcal Electronic energy + Delta-G solvation = -19984.320957 eV Core-core repulsion = 16607.119152 eV Total energy + Delta-G solvation = -3377.201805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -45.38802 -40.31406 -38.69911 -35.90794 -34.79009 -34.39568 -33.16703 -32.22088 -31.34566 -29.97331 -27.36587 -25.36236 -24.92042 -23.80361 -22.76630 -22.54058 -19.79039 -18.89680 -18.41047 -17.92431 -16.71281 -16.65793 -16.31613 -16.02747 -15.68648 -15.20512 -14.91617 -14.80710 -14.58805 -14.42868 -14.26465 -13.59676 -13.01403 -12.71963 -12.63013 -12.61499 -12.45164 -12.38547 -12.20182 -12.05939 -11.88183 -11.63848 -11.31279 -11.22397 -10.72671 -10.32256 -10.15681 -9.60522 -8.70485 -6.59001 -0.50807 0.15807 0.20966 0.51809 0.89509 1.21098 1.57473 1.64392 1.79916 2.53425 2.56180 2.60486 3.06318 3.11986 3.67867 3.75368 3.82997 3.83557 3.87987 4.16732 4.25533 4.30999 4.38971 4.52840 4.57913 4.89269 4.95326 5.05601 5.06589 5.16678 5.32237 5.59590 5.61572 6.03350 6.42753 6.99340 7.20036 7.38157 8.67677 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.032077 B = 0.002195 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.690445 B =12751.152773 C =13279.747502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.014 4.014 3 Si 1.124 2.876 4 H -0.260 1.260 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.652 4.652 8 H 0.076 0.924 9 C 0.208 3.792 10 H 0.022 0.978 11 O -0.588 6.588 12 C 0.109 3.891 13 N -0.111 5.111 14 N -0.084 5.084 15 N -0.296 5.296 16 C 0.184 3.816 17 C -0.009 4.009 18 C -0.081 4.081 19 C -0.088 4.088 20 C -0.082 4.082 21 Br -0.035 7.035 22 C -0.086 4.086 23 C -0.078 4.078 24 N -0.293 5.293 25 H 0.266 0.734 26 H 0.372 0.628 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.142 0.858 30 H 0.161 0.839 31 H 0.163 0.837 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.298 -22.541 -8.140 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.217 4.217 3 Si 0.946 3.054 4 H -0.184 1.184 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.690 4.690 8 H 0.094 0.906 9 C 0.149 3.851 10 H 0.040 0.960 11 O -0.394 6.394 12 C -0.009 4.009 13 N -0.025 5.025 14 N -0.076 5.076 15 N -0.167 5.167 16 C -0.096 4.096 17 C -0.013 4.013 18 C -0.102 4.102 19 C -0.107 4.107 20 C -0.163 4.163 21 Br 0.050 6.950 22 C -0.106 4.106 23 C -0.099 4.099 24 N -0.144 5.144 25 H 0.077 0.923 26 H 0.219 0.781 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.160 0.840 30 H 0.178 0.822 31 H 0.181 0.819 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.005 -21.102 -7.482 22.411 hybrid contribution 0.421 -1.216 -0.224 1.306 sum -0.584 -22.318 -7.706 23.618 Atomic orbital electron populations 1.70741 1.08414 1.31287 1.44933 1.27364 0.96271 1.06729 0.91308 0.82851 0.74677 0.70767 0.77137 1.18403 1.20896 1.21112 1.22606 0.95507 0.91720 1.59176 0.90628 1.19733 0.88465 0.91463 0.85421 0.96036 1.86508 1.39787 1.96357 1.16740 1.23553 0.94859 0.74538 1.07960 1.50470 1.33482 1.18308 1.00226 1.78847 1.12939 1.02935 1.12883 1.75877 1.15854 1.11109 1.13830 1.24073 1.01248 0.95373 0.88882 1.17564 0.99712 0.91394 0.92613 1.21295 0.97955 0.99089 0.91825 1.21253 0.96156 0.91719 1.01597 1.22140 1.02793 0.96189 0.95143 1.96756 1.78874 1.46057 1.73267 1.21269 0.98319 0.99153 0.91831 1.21294 0.95387 0.91834 1.01390 1.74824 1.16001 1.05121 1.18434 0.92333 0.78093 0.84663 0.84705 0.84024 0.82167 0.81896 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.41 13.53 21.45 0.29 -54.12 16 2 C -0.01 -0.74 5.40 84.65 0.46 -0.28 16 3 Si 1.12 45.96 29.90 68.60 2.05 48.01 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.65 -32.08 8.76 25.60 0.22 -31.85 16 8 H 0.08 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.21 9.65 2.67 29.85 0.08 9.73 16 10 H 0.02 1.18 8.01 -2.39 -0.02 1.16 16 11 O -0.59 -27.98 11.96 -148.98 -1.78 -29.76 16 12 C 0.11 3.89 6.17 86.38 0.53 4.43 16 13 N -0.11 -4.22 3.94 -187.54 -0.74 -4.96 16 14 N -0.08 -3.32 13.23 37.02 0.49 -2.83 16 15 N -0.30 -11.11 12.23 -52.18 -0.64 -11.75 16 16 C 0.18 6.35 7.94 137.38 1.09 7.44 16 17 C -0.01 -0.25 5.88 -20.04 -0.12 -0.37 16 18 C -0.08 -1.86 9.70 22.48 0.22 -1.64 16 19 C -0.09 -1.61 9.77 22.26 0.22 -1.39 16 20 C -0.08 -1.46 6.23 22.35 0.14 -1.32 16 21 Br -0.04 -0.53 33.69 -20.37 -0.69 -1.22 16 22 C -0.09 -1.52 9.77 22.26 0.22 -1.30 16 23 C -0.08 -1.74 9.70 22.47 0.22 -1.52 16 24 N -0.29 -10.68 11.85 -52.13 -0.62 -11.30 16 25 H 0.27 16.48 6.47 -92.71 -0.60 15.88 16 26 H 0.37 15.24 9.04 -74.06 -0.67 14.57 16 27 H 0.14 4.10 8.14 -2.39 -0.02 4.08 16 28 H 0.14 4.31 8.14 -2.39 -0.02 4.29 16 29 H 0.14 3.25 7.88 -2.91 -0.02 3.22 16 30 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 31 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.15 3.14 7.89 -2.91 -0.02 3.12 16 Total: -1.00 -64.77 313.08 2.32 -62.45 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.68 Total: 23.57 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 3.28 Total: -18.09 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -1.21 Total: -84.96 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -1.78 Total: -29.76 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.05 Total: 48.01 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -0.69 Total: -1.22 kcal Total: -64.77 2.32 -62.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287521244.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.411 kcal (2) G-P(sol) polarization free energy of solvation -64.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds