Wall clock time and date at job start Tue Mar 31 2020 20:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47264 * 2 1 4 4 C 1.36936 * 119.99666 * 269.50899 * 3 2 1 5 5 H 1.08001 * 120.00547 * 326.10216 * 4 3 2 6 6 C 1.38815 * 119.99397 * 146.09915 * 4 3 2 7 7 N 1.31616 * 120.00243 * 336.58129 * 6 4 3 8 8 Si 1.86796 * 119.99762 * 156.58833 * 6 4 3 9 9 H 1.48496 * 109.47483 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47232 * 119.99923 * 8 6 4 11 11 H 1.48503 * 109.47154 * 239.99642 * 8 6 4 12 12 C 1.46500 * 119.99986 * 89.51258 * 3 2 1 13 13 C 1.50698 * 109.46981 * 89.99966 * 12 3 2 14 14 N 1.29011 * 124.90917 * 90.00420 * 13 12 3 15 15 C 1.31798 * 117.13088 * 180.02562 * 14 13 12 16 16 C 1.33697 * 114.48187 * 359.97438 * 15 14 13 17 17 I 2.09499 * 126.04092 * 179.97438 * 16 15 14 18 18 S 1.70971 * 124.91124 * 269.99782 * 13 12 3 19 19 H 1.08993 * 109.47432 * 59.99954 * 1 2 3 20 20 H 1.08997 * 109.47132 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46573 * 299.99783 * 1 2 3 22 22 H 1.09000 * 109.47314 * 240.00151 * 2 1 3 23 23 H 1.09002 * 109.47599 * 120.00155 * 2 1 3 24 24 H 0.96999 * 120.00676 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.46591 * 330.00427 * 12 3 2 26 26 H 1.08995 * 109.46949 * 210.00208 * 12 3 2 27 27 H 1.07997 * 122.75857 * 179.73379 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2562 2.0233 -1.1859 5 1 2.6207 1.4677 -2.0373 6 6 2.0285 3.3884 -1.2938 7 7 1.1855 3.9818 -0.4755 8 14 2.9186 4.3833 -2.6004 9 1 3.8052 3.4878 -3.3860 10 1 1.9243 5.0142 -3.5051 11 1 3.7345 5.4391 -1.9485 12 6 2.2524 2.0755 1.2687 13 6 3.6721 1.8399 1.7158 14 7 4.6773 2.5868 1.4059 15 6 5.8554 2.2369 1.8820 16 6 5.8426 1.1331 2.6363 17 53 7.5021 0.2578 3.5683 18 16 4.1835 0.5442 2.7071 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.0261 4.9356 -0.5510 25 1 1.5655 1.6934 2.0239 26 1 2.0864 3.1443 1.1340 27 1 6.7576 2.7938 1.6765 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289039871.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:57 Heat of formation + Delta-G solvation = 76.773210 kcal Electronic energy + Delta-G solvation = -13596.308037 eV Core-core repulsion = 11148.095883 eV Total energy + Delta-G solvation = -2448.212154 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 337.965 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.11683 -36.12875 -32.06843 -31.96525 -29.80841 -27.92510 -25.90067 -23.97002 -22.96633 -20.64151 -18.73642 -17.72915 -16.66910 -14.91783 -14.77996 -14.51916 -13.86882 -13.55058 -13.20311 -12.50837 -12.30902 -11.89783 -11.34813 -11.29037 -11.18045 -10.76950 -10.60214 -10.43629 -10.22231 -10.16169 -9.97031 -9.89637 -8.95254 -8.78785 -8.63807 -8.37725 -6.88667 -5.97865 -3.46625 0.97264 1.06594 1.91246 2.28552 3.32513 3.37420 3.44478 3.46564 4.41178 4.84488 5.24782 5.36169 5.68922 5.79676 5.95358 6.21707 6.33860 6.41411 6.52502 6.62475 6.83477 7.11925 7.35181 7.69454 8.25994 8.39611 8.95121 9.60761 10.12092 11.04292 Molecular weight = 337.96amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.004432 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.358985 B = 6315.513276 C = 7105.343470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 N -0.563 5.563 4 C -0.258 4.258 5 H 0.065 0.935 6 C 0.023 3.977 7 N -0.876 5.876 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.283 1.283 12 C 0.197 3.803 13 C 0.104 3.896 14 N -0.474 5.474 15 C 0.101 3.899 16 C -0.289 4.289 17 I 0.009 6.991 18 S 0.099 5.901 19 H 0.058 0.942 20 H 0.035 0.965 21 H 0.045 0.955 22 H 0.048 0.952 23 H 0.034 0.966 24 H 0.259 0.741 25 H 0.054 0.946 26 H 0.135 0.865 27 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.455 -8.115 10.366 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.013 3.987 3 N -0.281 5.281 4 C -0.388 4.388 5 H 0.083 0.917 6 C -0.178 4.178 7 N -0.518 5.518 8 Si 0.731 3.269 9 H -0.201 1.201 10 H -0.217 1.217 11 H -0.210 1.210 12 C 0.065 3.935 13 C -0.178 4.178 14 N -0.189 5.189 15 C -0.056 4.056 16 C -0.550 4.550 17 I 0.152 6.848 18 S 0.353 5.647 19 H 0.077 0.923 20 H 0.054 0.946 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.829 -8.938 11.104 17.902 hybrid contribution 0.462 1.536 -1.405 2.133 sum 11.291 -7.402 9.699 16.623 Atomic orbital electron populations 1.22223 0.98734 0.98841 1.02255 1.20971 0.92599 0.86483 0.98697 1.43875 1.71931 1.10637 1.01677 1.19086 1.38369 0.91592 0.89774 0.91697 1.25041 0.96368 0.98263 0.98153 1.69903 1.31665 1.10663 1.39524 0.86257 0.79564 0.80245 0.80857 1.20098 1.21691 1.20951 1.20073 0.81969 1.04466 0.86945 1.29969 1.03346 0.91252 0.93213 1.66541 0.97909 1.30884 1.23561 1.21866 0.96765 0.93233 0.93739 1.29898 1.00119 1.07467 1.17554 1.96508 1.30112 1.80601 1.77541 1.83861 0.98543 1.33027 1.49313 0.92288 0.94612 0.93576 0.93406 0.94722 0.93092 0.92807 0.84867 0.81669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.24 37.16 0.38 -2.59 15 2 C 0.14 2.75 6.39 -4.04 -0.03 2.73 15 3 N -0.56 -13.23 2.44 -174.61 -0.43 -13.65 15 4 C -0.26 -6.79 9.48 -15.06 -0.14 -6.93 15 5 H 0.07 1.73 7.93 -52.49 -0.42 1.32 15 6 C 0.02 0.63 4.94 -17.43 -0.09 0.54 15 7 N -0.88 -23.89 11.34 55.49 0.63 -23.26 15 8 Si 0.90 21.57 29.61 -169.99 -5.03 16.54 15 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 11 H -0.28 -6.92 7.11 56.52 0.40 -6.51 15 12 C 0.20 4.41 5.87 -5.19 -0.03 4.38 15 13 C 0.10 2.15 6.97 -13.46 -0.09 2.05 15 14 N -0.47 -10.24 10.54 -11.85 -0.12 -10.36 15 15 C 0.10 1.83 11.29 -19.16 -0.22 1.61 15 16 C -0.29 -4.74 7.05 29.14 0.21 -4.54 15 17 I 0.01 0.12 40.68 -73.02 -2.97 -2.85 15 18 S 0.10 1.68 23.18 -107.50 -2.49 -0.81 15 19 H 0.06 1.21 8.14 -51.93 -0.42 0.78 15 20 H 0.03 0.55 8.14 -51.93 -0.42 0.12 15 21 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 22 H 0.05 0.94 8.04 -51.93 -0.42 0.53 15 23 H 0.03 0.62 8.08 -51.93 -0.42 0.21 15 24 H 0.26 6.83 8.31 -40.82 -0.34 6.49 15 25 H 0.05 1.09 8.07 -51.93 -0.42 0.67 15 26 H 0.13 3.43 5.33 -51.93 -0.28 3.15 15 27 H 0.17 2.60 8.06 -52.49 -0.42 2.18 15 LS Contribution 279.57 15.07 4.21 4.21 Total: -1.00 -27.24 279.57 -8.99 -36.23 By element: Atomic # 1 Polarization: -0.51 SS G_CDS: -2.77 Total: -3.28 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.01 Total: -2.76 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.08 Total: -47.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.49 Total: -0.81 kcal Atomic # 53 Polarization: 0.12 SS G_CDS: -2.97 Total: -2.85 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.24 -8.99 -36.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289039871.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.004 kcal (2) G-P(sol) polarization free energy of solvation -27.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds