Wall clock time and date at job start Tue Mar 31 2020 20:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47264 * 2 1 4 4 C 1.36936 * 119.99666 * 269.50899 * 3 2 1 5 5 H 1.08001 * 120.00547 * 326.10216 * 4 3 2 6 6 C 1.38815 * 119.99397 * 146.09915 * 4 3 2 7 7 N 1.31616 * 120.00243 * 336.58129 * 6 4 3 8 8 Si 1.86796 * 119.99762 * 156.58833 * 6 4 3 9 9 H 1.48496 * 109.47483 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47232 * 119.99923 * 8 6 4 11 11 H 1.48503 * 109.47154 * 239.99642 * 8 6 4 12 12 C 1.46500 * 119.99986 * 89.51258 * 3 2 1 13 13 C 1.50698 * 109.46981 * 89.99966 * 12 3 2 14 14 N 1.29011 * 124.90917 * 90.00420 * 13 12 3 15 15 C 1.31798 * 117.13088 * 180.02562 * 14 13 12 16 16 C 1.33697 * 114.48187 * 359.97438 * 15 14 13 17 17 I 2.09499 * 126.04092 * 179.97438 * 16 15 14 18 18 S 1.70971 * 124.91124 * 269.99782 * 13 12 3 19 19 H 1.08993 * 109.47432 * 59.99954 * 1 2 3 20 20 H 1.08997 * 109.47132 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46573 * 299.99783 * 1 2 3 22 22 H 1.09000 * 109.47314 * 240.00151 * 2 1 3 23 23 H 1.09002 * 109.47599 * 120.00155 * 2 1 3 24 24 H 0.96999 * 120.00676 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.46591 * 330.00427 * 12 3 2 26 26 H 1.08995 * 109.46949 * 210.00208 * 12 3 2 27 27 H 1.07997 * 122.75857 * 179.73379 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2562 2.0233 -1.1859 5 1 2.6207 1.4677 -2.0373 6 6 2.0285 3.3884 -1.2938 7 7 1.1855 3.9818 -0.4755 8 14 2.9186 4.3833 -2.6004 9 1 3.8052 3.4878 -3.3860 10 1 1.9243 5.0142 -3.5051 11 1 3.7345 5.4391 -1.9485 12 6 2.2524 2.0755 1.2687 13 6 3.6721 1.8399 1.7158 14 7 4.6773 2.5868 1.4059 15 6 5.8554 2.2369 1.8820 16 6 5.8426 1.1331 2.6363 17 53 7.5021 0.2578 3.5683 18 16 4.1835 0.5442 2.7071 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.0261 4.9356 -0.5510 25 1 1.5655 1.6934 2.0239 26 1 2.0864 3.1443 1.1340 27 1 6.7576 2.7938 1.6765 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289039871.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:57 Heat of formation + Delta-G solvation = 61.922659 kcal Electronic energy + Delta-G solvation = -13596.952005 eV Core-core repulsion = 11148.095883 eV Total energy + Delta-G solvation = -2448.856122 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 337.965 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.62415 -37.84846 -33.83747 -33.47079 -31.37029 -29.56131 -27.49080 -25.69553 -24.50932 -22.29746 -20.29437 -19.32266 -18.40977 -16.78837 -16.27664 -16.14571 -15.66410 -15.12453 -14.78177 -14.17075 -13.78648 -13.45870 -13.16408 -12.91163 -12.71020 -12.51905 -12.34305 -12.13073 -11.96332 -11.71247 -11.52846 -11.16601 -10.59965 -10.45614 -10.17451 -9.78424 -8.74936 -7.92505 -5.45741 -0.39897 -0.34168 0.54073 0.77565 1.42080 1.48602 1.54505 1.85770 2.48916 3.19799 3.44251 3.68296 4.27941 4.29965 4.40924 4.61427 4.82172 4.83630 5.06127 5.11526 5.28243 5.47921 5.58661 5.70852 6.38054 6.89601 7.05928 7.74677 8.23055 9.06670 Molecular weight = 337.96amu Principal moments of inertia in cm(-1) A = 0.024021 B = 0.004432 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.358985 B = 6315.513276 C = 7105.343470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.579 5.579 4 C -0.265 4.265 5 H 0.054 0.946 6 C -0.016 4.016 7 N -0.903 5.903 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.293 1.293 12 C 0.202 3.798 13 C 0.072 3.928 14 N -0.508 5.508 15 C 0.082 3.918 16 C -0.287 4.287 17 I 0.060 6.940 18 S 0.165 5.835 19 H 0.030 0.970 20 H 0.070 0.930 21 H 0.040 0.960 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.254 0.746 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.936 -9.931 11.701 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.010 3.990 3 N -0.300 5.300 4 C -0.395 4.395 5 H 0.071 0.929 6 C -0.215 4.215 7 N -0.546 5.546 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.220 1.220 12 C 0.071 3.929 13 C -0.209 4.209 14 N -0.224 5.224 15 C -0.074 4.074 16 C -0.546 4.546 17 I 0.201 6.799 18 S 0.418 5.582 19 H 0.050 0.950 20 H 0.089 0.911 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 12.304 -10.766 12.434 20.540 hybrid contribution 0.196 1.942 -1.601 2.525 sum 12.500 -8.824 10.833 18.747 Atomic orbital electron populations 1.22100 0.97754 1.00586 1.00566 1.21112 0.93368 0.84963 0.99603 1.43978 1.73267 1.11571 1.01139 1.19128 1.37771 0.91834 0.90745 0.92856 1.25504 0.97200 0.99037 0.99717 1.69998 1.33187 1.10333 1.41056 0.85554 0.78612 0.78935 0.79335 1.19982 1.21370 1.21964 1.19734 0.83600 1.02484 0.87039 1.29357 1.02516 0.93508 0.95513 1.66490 0.99218 1.32364 1.24347 1.22078 0.96387 0.94374 0.94547 1.30465 1.01690 1.06633 1.15811 1.96571 1.27324 1.79545 1.76418 1.83491 0.98215 1.29739 1.46714 0.95040 0.91071 0.94116 0.93572 0.92550 0.93614 0.91370 0.88466 0.79907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 10.24 71.98 0.74 -4.68 15 2 C 0.13 5.22 6.39 86.38 0.55 5.77 15 3 N -0.58 -27.45 2.44 -706.33 -1.72 -29.17 15 4 C -0.26 -14.19 9.48 84.03 0.80 -13.39 15 5 H 0.05 2.92 7.93 -2.91 -0.02 2.89 15 6 C -0.02 -0.86 4.94 84.86 0.42 -0.44 15 7 N -0.90 -50.90 11.34 21.65 0.25 -50.66 15 8 Si 0.95 45.43 29.61 68.60 2.03 47.46 15 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 15 10 H -0.29 -13.47 7.11 99.48 0.71 -12.76 15 11 H -0.29 -14.34 7.11 99.48 0.71 -13.64 15 12 C 0.20 9.16 5.87 85.63 0.50 9.66 15 13 C 0.07 2.94 6.97 88.52 0.62 3.56 15 14 N -0.51 -21.82 10.54 -191.41 -2.02 -23.84 15 15 C 0.08 2.84 11.29 83.67 0.94 3.78 15 16 C -0.29 -8.67 7.05 66.79 0.47 -8.20 15 17 I 0.06 1.34 40.68 -18.82 -0.77 0.57 15 18 S 0.16 5.20 23.18 -56.49 -1.31 3.89 15 19 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 20 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 21 H 0.04 1.48 8.14 -2.39 -0.02 1.46 15 22 H 0.05 1.78 8.04 -2.39 -0.02 1.77 15 23 H 0.06 1.91 8.08 -2.39 -0.02 1.89 15 24 H 0.25 13.95 8.31 -92.71 -0.77 13.18 15 25 H 0.07 2.77 8.07 -2.39 -0.02 2.75 15 26 H 0.10 5.19 5.33 -2.39 -0.01 5.17 15 27 H 0.18 5.46 8.06 -2.91 -0.02 5.44 15 Total: -1.00 -59.21 279.57 2.68 -56.53 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: 1.17 Total: -0.85 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: 5.04 Total: -3.95 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -3.49 Total: -103.67 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.31 Total: 3.89 kcal Atomic # 53 Polarization: 1.34 SS G_CDS: -0.77 Total: 0.57 kcal Total: -59.21 2.68 -56.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289039871.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.456 kcal (2) G-P(sol) polarization free energy of solvation -59.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds