Wall clock time and date at job start Tue Mar 31 2020 20:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48498 * 109.46953 * 239.99806 * 3 2 1 5 5 H 1.48502 * 109.47202 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47332 * 120.00017 * 3 2 1 7 7 C 1.40046 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00211 * 359.97438 * 7 2 1 10 10 O 1.21698 * 119.99784 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00307 * 179.97438 * 9 7 2 12 12 C 1.46502 * 119.99966 * 180.02562 * 11 9 7 13 13 H 1.08999 * 112.59268 * 334.36266 * 12 11 9 14 14 C 1.53209 * 113.27222 * 203.98501 * 12 11 9 15 15 N 1.46758 * 83.88243 * 244.99502 * 14 12 11 16 16 C 1.39955 * 130.88138 * 180.02562 * 15 14 12 17 17 C 1.38877 * 120.06296 * 359.67919 * 16 15 14 18 18 C 1.38100 * 119.93978 * 179.74304 * 17 16 15 19 19 C 1.38360 * 120.06069 * 0.52893 * 18 17 16 20 20 Br 1.89106 * 119.93938 * 179.74434 * 19 18 17 21 21 C 1.38361 * 120.12531 * 359.72529 * 19 18 17 22 22 C 1.38108 * 120.05577 * 0.02562 * 21 19 18 23 23 C 1.35079 * 98.23556 * 359.97438 * 15 14 12 24 24 O 1.21294 * 135.56828 * 180.25826 * 23 15 14 25 25 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 26 26 H 0.96994 * 119.99565 * 0.02562 * 11 9 7 27 27 H 1.09005 * 114.11889 * 358.71768 * 14 12 11 28 28 H 1.08994 * 114.12323 * 131.08231 * 14 12 11 29 29 H 1.08001 * 120.02535 * 359.97152 * 17 16 15 30 30 H 1.08003 * 119.97007 * 180.27004 * 18 17 16 31 31 H 1.07996 * 119.97647 * 180.02562 * 21 19 18 32 32 H 1.08001 * 120.02814 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0017 12 6 1.2164 -4.9164 0.0022 13 1 0.2214 -4.8253 0.4380 14 6 2.0275 -6.0835 0.5743 15 7 1.9336 -6.6129 -0.7913 16 6 2.4307 -7.7950 -1.3516 17 6 3.1549 -8.6850 -0.5692 18 6 3.6397 -9.8533 -1.1234 19 6 3.4140 -10.1323 -2.4597 20 35 4.0856 -11.7297 -3.2169 21 6 2.6973 -9.2450 -3.2429 22 6 2.2058 -8.0776 -2.6926 23 6 1.2180 -5.6070 -1.3399 24 8 0.7661 -5.3649 -2.4391 25 1 -0.4850 0.8401 -0.0004 26 1 2.9189 -3.6477 0.0013 27 1 3.0390 -5.8156 0.8796 28 1 1.4950 -6.6724 1.3211 29 1 3.3355 -8.4653 0.4727 30 1 4.1992 -10.5479 -0.5143 31 1 2.5222 -9.4654 -4.2856 32 1 1.6468 -7.3851 -3.3045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294071647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:08 Heat of formation + Delta-G solvation = -9.228394 kcal Electronic energy + Delta-G solvation = -19969.227179 eV Core-core repulsion = 16556.125326 eV Total energy + Delta-G solvation = -3413.101853 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.28010 -39.02933 -37.20123 -36.55007 -33.49722 -32.57290 -31.81978 -31.32893 -29.91711 -27.14058 -26.02007 -24.89350 -22.76779 -22.19098 -20.26911 -19.11913 -17.63437 -17.31797 -16.78711 -16.35356 -16.10833 -15.37911 -15.04279 -14.67783 -14.09525 -13.95720 -13.74754 -13.44764 -13.27746 -13.09849 -12.50218 -12.27048 -12.04932 -11.63988 -11.49643 -11.28343 -11.21908 -11.06830 -10.59424 -10.48696 -10.35511 -10.03292 -10.01390 -9.30970 -8.94499 -8.02707 -7.87660 -7.81515 -6.30942 -4.78125 0.84032 1.06544 1.45954 2.52538 2.67568 3.10574 3.16134 3.17794 3.51228 3.99919 4.08215 4.29918 4.49523 4.61417 4.64675 4.66814 5.01662 5.09554 5.18281 5.24057 5.33151 5.62926 5.72331 5.76325 5.88185 5.99116 6.01355 6.26044 6.61740 6.76692 7.32240 7.58800 7.78297 8.13830 8.19500 8.89811 9.24973 10.42563 10.61551 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.002136 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.559708 B =13106.995270 C =13154.684801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.087 3.913 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.553 3.447 10 O -0.570 6.570 11 N -0.741 5.741 12 C 0.111 3.889 13 H 0.134 0.866 14 C 0.098 3.902 15 N -0.582 5.582 16 C 0.191 3.809 17 C -0.158 4.158 18 C -0.057 4.057 19 C -0.129 4.129 20 Br -0.061 7.061 21 C -0.054 4.054 22 C -0.156 4.156 23 C 0.522 3.478 24 O -0.465 6.465 25 H 0.271 0.729 26 H 0.388 0.612 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.760 -22.004 -0.731 24.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.358 3.642 10 O -0.452 6.452 11 N -0.397 5.397 12 C -0.001 4.001 13 H 0.152 0.848 14 C -0.024 4.024 15 N -0.310 5.310 16 C 0.095 3.905 17 C -0.180 4.180 18 C -0.077 4.077 19 C -0.209 4.209 20 Br 0.024 6.976 21 C -0.074 4.074 22 C -0.178 4.178 23 C 0.308 3.692 24 O -0.332 6.332 25 H 0.082 0.918 26 H 0.221 0.779 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.642 -22.315 -1.679 23.989 hybrid contribution 0.879 0.905 0.071 1.263 sum 9.520 -21.410 -1.608 23.487 Atomic orbital electron populations 1.69995 1.07108 1.27757 1.34262 1.25720 0.94690 1.00438 0.92547 0.86364 0.79786 0.80715 0.79520 1.19208 1.20458 1.19169 1.20778 0.93644 0.88900 1.54375 0.91173 1.18373 0.87364 0.82113 0.76349 1.90633 1.13932 1.86095 1.54526 1.46117 1.08606 1.03007 1.81982 1.22519 1.00166 0.86348 0.91100 0.84844 1.23410 1.02505 0.93168 0.83307 1.49285 1.51809 1.17584 1.12289 1.18278 0.93006 0.86652 0.92537 1.20720 1.02268 0.94687 1.00335 1.20864 0.97589 0.96353 0.92934 1.21597 1.07608 0.95477 0.96232 1.96674 1.86250 1.30651 1.83991 1.20915 0.94625 0.92181 0.99695 1.21016 1.04090 0.98768 0.93899 1.23349 0.75029 0.80144 0.90717 1.90736 1.46707 1.71595 1.24198 0.91772 0.77928 0.87902 0.87592 0.84753 0.84775 0.84746 0.84127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.23 11.83 55.55 0.66 -21.58 16 2 C 0.09 2.34 5.50 -17.37 -0.10 2.24 16 3 Si 0.91 19.47 29.56 -169.99 -5.02 14.45 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 7 C -0.54 -14.54 9.54 -35.63 -0.34 -14.88 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.55 14.84 7.75 -12.99 -0.10 14.74 16 10 O -0.57 -17.67 14.63 5.19 0.08 -17.59 16 11 N -0.74 -14.97 5.31 -67.60 -0.36 -15.33 16 12 C 0.11 1.88 4.26 -83.84 -0.36 1.52 16 13 H 0.13 2.44 7.49 -51.93 -0.39 2.05 16 14 C 0.10 1.07 8.27 -3.79 -0.03 1.04 16 15 N -0.58 -7.96 3.37 -145.76 -0.49 -8.45 16 16 C 0.19 2.44 6.72 -83.68 -0.56 1.88 16 17 C -0.16 -1.60 9.63 -39.40 -0.38 -1.98 16 18 C -0.06 -0.55 9.78 -39.59 -0.39 -0.93 16 19 C -0.13 -1.35 6.23 -39.49 -0.25 -1.60 16 20 Br -0.06 -0.57 33.70 -68.01 -2.29 -2.86 16 21 C -0.05 -0.61 9.78 -39.58 -0.39 -0.99 16 22 C -0.16 -2.07 9.57 -39.39 -0.38 -2.44 16 23 C 0.52 9.46 9.06 -10.73 -0.10 9.36 16 24 O -0.47 -10.25 16.78 5.55 0.09 -10.16 16 25 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 26 H 0.39 6.69 8.63 -40.82 -0.35 6.33 16 27 H 0.10 0.91 8.05 -51.93 -0.42 0.50 16 28 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.13 1.04 7.63 -52.49 -0.40 0.64 16 30 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.14 2.10 6.65 -52.49 -0.35 1.75 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -34.61 311.43 -8.73 -43.34 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -2.72 Total: 5.54 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -3.36 Total: 7.96 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.19 Total: -45.36 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: 0.17 Total: -27.75 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 35 Polarization: -0.57 SS G_CDS: -2.29 Total: -2.86 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.61 -8.73 -43.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294071647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.109 kcal (2) G-P(sol) polarization free energy of solvation -34.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds