Wall clock time and date at job start Tue Mar 31 2020 20:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86796 * 120.00112 * 2 1 4 4 H 1.48498 * 109.46953 * 239.99806 * 3 2 1 5 5 H 1.48502 * 109.47202 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47332 * 120.00017 * 3 2 1 7 7 C 1.40046 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00211 * 359.97438 * 7 2 1 10 10 O 1.21698 * 119.99784 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00307 * 179.97438 * 9 7 2 12 12 C 1.46502 * 119.99966 * 180.02562 * 11 9 7 13 13 H 1.08999 * 112.59268 * 334.36266 * 12 11 9 14 14 C 1.53209 * 113.27222 * 203.98501 * 12 11 9 15 15 N 1.46758 * 83.88243 * 244.99502 * 14 12 11 16 16 C 1.39955 * 130.88138 * 180.02562 * 15 14 12 17 17 C 1.38877 * 120.06296 * 359.67919 * 16 15 14 18 18 C 1.38100 * 119.93978 * 179.74304 * 17 16 15 19 19 C 1.38360 * 120.06069 * 0.52893 * 18 17 16 20 20 Br 1.89106 * 119.93938 * 179.74434 * 19 18 17 21 21 C 1.38361 * 120.12531 * 359.72529 * 19 18 17 22 22 C 1.38108 * 120.05577 * 0.02562 * 21 19 18 23 23 C 1.35079 * 98.23556 * 359.97438 * 15 14 12 24 24 O 1.21294 * 135.56828 * 180.25826 * 23 15 14 25 25 H 0.97006 * 120.00048 * 0.02562 * 1 2 3 26 26 H 0.96994 * 119.99565 * 0.02562 * 11 9 7 27 27 H 1.09005 * 114.11889 * 358.71768 * 14 12 11 28 28 H 1.08994 * 114.12323 * 131.08231 * 14 12 11 29 29 H 1.08001 * 120.02535 * 359.97152 * 17 16 15 30 30 H 1.08003 * 119.97007 * 180.27004 * 18 17 16 31 31 H 1.07996 * 119.97647 * 180.02562 * 21 19 18 32 32 H 1.08001 * 120.02814 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2758 2.7464 -0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2129 0.0010 9 6 1.2751 -2.4805 0.0017 10 8 0.0581 -2.4805 0.0017 11 7 1.9489 -3.6477 0.0017 12 6 1.2164 -4.9164 0.0022 13 1 0.2214 -4.8253 0.4380 14 6 2.0275 -6.0835 0.5743 15 7 1.9336 -6.6129 -0.7913 16 6 2.4307 -7.7950 -1.3516 17 6 3.1549 -8.6850 -0.5692 18 6 3.6397 -9.8533 -1.1234 19 6 3.4140 -10.1323 -2.4597 20 35 4.0856 -11.7297 -3.2169 21 6 2.6973 -9.2450 -3.2429 22 6 2.2058 -8.0776 -2.6926 23 6 1.2180 -5.6070 -1.3399 24 8 0.7661 -5.3649 -2.4391 25 1 -0.4850 0.8401 -0.0004 26 1 2.9189 -3.6477 0.0013 27 1 3.0390 -5.8156 0.8796 28 1 1.4950 -6.6724 1.3211 29 1 3.3355 -8.4653 0.4727 30 1 4.1992 -10.5479 -0.5143 31 1 2.5222 -9.4654 -4.2856 32 1 1.6468 -7.3851 -3.3045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294071647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:08 Heat of formation + Delta-G solvation = -34.429502 kcal Electronic energy + Delta-G solvation = -19970.319981 eV Core-core repulsion = 16556.125326 eV Total energy + Delta-G solvation = -3414.194655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.50376 -40.03520 -39.06757 -38.03029 -35.03661 -34.43368 -33.12787 -32.18838 -30.97003 -28.74531 -27.42205 -26.11444 -23.66630 -23.37693 -22.01178 -20.42143 -19.15688 -18.78162 -18.00152 -17.85507 -17.28493 -17.02406 -16.16004 -15.89423 -15.60713 -15.29204 -14.79700 -14.59236 -14.53117 -14.36339 -14.22777 -13.90144 -13.17463 -12.99359 -12.81047 -12.71384 -12.61297 -12.34928 -12.25053 -12.06091 -11.52452 -11.25213 -10.94065 -10.91861 -10.15857 -9.95976 -9.62984 -8.99748 -8.31849 -6.88985 -0.12688 0.21097 0.63799 1.21065 1.42021 1.44544 1.56631 1.58613 2.24405 2.39520 2.59652 2.89187 2.96709 3.32468 3.63303 3.75629 3.82843 4.15648 4.15939 4.18657 4.34201 4.51212 4.74797 4.77003 4.87362 4.94555 5.15371 5.29558 5.30955 5.59021 5.78951 5.80971 6.00487 6.19285 6.84354 6.88833 7.41134 8.41986 8.63234 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.002136 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.559708 B =13106.995270 C =13154.684801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.028 3.972 3 Si 0.999 3.001 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.248 1.248 7 C -0.568 4.568 8 H 0.093 0.907 9 C 0.539 3.461 10 O -0.624 6.624 11 N -0.729 5.729 12 C 0.095 3.905 13 H 0.112 0.888 14 C 0.126 3.874 15 N -0.568 5.568 16 C 0.167 3.833 17 C -0.139 4.139 18 C -0.052 4.052 19 C -0.130 4.130 20 Br -0.047 7.047 21 C -0.059 4.059 22 C -0.176 4.176 23 C 0.507 3.493 24 O -0.524 6.524 25 H 0.275 0.725 26 H 0.404 0.596 27 H 0.138 0.862 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.165 0.835 31 H 0.142 0.858 32 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.962 -23.618 1.060 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.183 1.183 5 H -0.202 1.202 6 H -0.172 1.172 7 C -0.604 4.604 8 H 0.111 0.889 9 C 0.344 3.656 10 O -0.511 6.511 11 N -0.384 5.384 12 C -0.017 4.017 13 H 0.130 0.870 14 C 0.007 3.993 15 N -0.294 5.294 16 C 0.072 3.928 17 C -0.161 4.161 18 C -0.072 4.072 19 C -0.210 4.210 20 Br 0.038 6.962 21 C -0.080 4.080 22 C -0.198 4.198 23 C 0.293 3.707 24 O -0.396 6.396 25 H 0.085 0.915 26 H 0.240 0.760 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.187 0.813 30 H 0.183 0.817 31 H 0.160 0.840 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.932 -24.031 0.151 26.831 hybrid contribution -0.063 1.168 -0.519 1.279 sum 11.869 -22.863 -0.368 25.763 Atomic orbital electron populations 1.70175 1.09581 1.29179 1.35973 1.26996 0.95525 1.05080 0.91200 0.85053 0.78173 0.74630 0.80360 1.18273 1.20165 1.17162 1.21384 0.94963 0.89640 1.54455 0.88863 1.18687 0.86908 0.84181 0.75824 1.90588 1.16227 1.87462 1.56799 1.45569 1.09309 1.02901 1.80647 1.22842 1.00379 0.86732 0.91737 0.87003 1.23703 1.03683 0.89477 0.82470 1.48963 1.50439 1.17167 1.12856 1.18434 0.94780 0.86898 0.92711 1.21047 1.00030 0.93506 1.01469 1.21259 0.96872 0.96494 0.92606 1.21824 1.06741 0.95600 0.96854 1.96702 1.85903 1.29525 1.84032 1.20986 0.94800 0.91796 1.00368 1.20940 1.04996 0.99304 0.94559 1.23519 0.75357 0.81668 0.90127 1.90687 1.49330 1.73352 1.26244 0.91468 0.76002 0.84451 0.83318 0.81252 0.81734 0.84006 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.61 11.83 21.83 0.26 -49.35 16 2 C 0.03 1.50 5.50 85.30 0.47 1.97 16 3 Si 1.00 39.90 29.56 68.60 2.03 41.93 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 7 C -0.57 -30.96 9.54 24.83 0.24 -30.72 16 8 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 9 C 0.54 29.94 7.75 86.36 0.67 30.61 16 10 O -0.62 -40.87 14.63 -4.34 -0.06 -40.93 16 11 N -0.73 -29.72 5.31 -486.02 -2.58 -32.30 16 12 C 0.09 3.23 4.26 49.62 0.21 3.44 16 13 H 0.11 4.31 7.49 -2.39 -0.02 4.29 16 14 C 0.13 2.34 8.27 86.40 0.71 3.06 16 15 N -0.57 -14.79 3.37 -733.27 -2.47 -17.26 16 16 C 0.17 3.96 6.72 38.15 0.26 4.21 16 17 C -0.14 -2.21 9.63 22.39 0.22 -2.00 16 18 C -0.05 -0.78 9.78 22.27 0.22 -0.56 16 19 C -0.13 -2.40 6.23 22.33 0.14 -2.26 16 20 Br -0.05 -0.76 33.70 -20.37 -0.69 -1.45 16 21 C -0.06 -1.29 9.78 22.27 0.22 -1.08 16 22 C -0.18 -4.73 9.57 22.39 0.21 -4.52 16 23 C 0.51 19.10 9.06 87.68 0.79 19.90 16 24 O -0.52 -24.96 16.78 -3.07 -0.05 -25.01 16 25 H 0.28 15.16 8.29 -92.70 -0.77 14.39 16 26 H 0.40 13.53 8.63 -92.71 -0.80 12.73 16 27 H 0.14 1.71 8.05 -2.38 -0.02 1.69 16 28 H 0.15 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.17 1.51 7.63 -2.91 -0.02 1.49 16 30 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 31 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.11 3.64 6.65 -2.91 -0.02 3.62 16 Total: -1.00 -82.69 311.43 1.17 -81.52 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.38 Total: 20.81 kcal Atomic # 6 Polarization: 17.69 SS G_CDS: 4.36 Total: 22.04 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -4.79 Total: -98.91 kcal Atomic # 8 Polarization: -65.83 SS G_CDS: -0.12 Total: -65.94 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -0.69 Total: -1.45 kcal Total: -82.69 1.17 -81.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294071647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.086 kcal (2) G-P(sol) polarization free energy of solvation -82.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds