Wall clock time and date at job start Tue Mar 31 2020 20:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48497 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47103 * 299.99738 * 3 2 1 6 6 H 1.48501 * 109.47307 * 59.99524 * 3 2 1 7 7 C 1.37877 * 119.99601 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99540 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47068 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46845 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99901 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99825 * 179.97438 * 11 10 9 14 14 C 1.39654 * 119.99992 * 180.02562 * 13 11 10 15 15 N 1.32951 * 125.26420 * 359.97425 * 14 13 11 16 16 C 1.32925 * 109.63122 * 180.02562 * 15 14 13 17 17 C 1.40587 * 132.75880 * 180.02562 * 16 15 14 18 18 C 1.36337 * 119.26667 * 179.97438 * 17 16 15 19 19 Br 1.89099 * 120.20926 * 179.97438 * 18 17 16 20 20 C 1.40328 * 119.58231 * 0.02562 * 18 17 16 21 21 C 1.35205 * 120.18702 * 359.97438 * 20 18 17 22 22 N 1.35884 * 120.59859 * 0.04556 * 21 20 18 23 23 N 1.31734 * 125.26119 * 180.02562 * 14 13 11 24 24 H 0.97000 * 119.99538 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47252 * 59.99889 * 9 7 2 26 26 H 1.09006 * 109.46932 * 300.00015 * 9 7 2 27 27 H 1.08996 * 109.47129 * 60.00299 * 10 9 7 28 28 H 1.08993 * 109.47341 * 299.99631 * 10 9 7 29 29 H 0.97004 * 120.00119 * 0.02562 * 13 11 10 30 30 H 1.07997 * 120.36636 * 359.97438 * 17 16 15 31 31 H 1.08000 * 119.90859 * 179.97438 * 20 18 17 32 32 H 1.07999 * 119.69965 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4916 -4.9672 0.0025 12 8 0.2788 -4.9671 0.0024 13 7 2.1654 -6.1344 0.0031 14 6 1.4671 -7.3438 0.0031 15 7 0.1432 -7.4658 0.0031 16 6 -0.1866 -8.7534 0.0037 17 6 -1.4234 -9.4219 0.0035 18 6 -1.4443 -10.7851 0.0038 19 35 -3.0928 -11.7115 0.0042 20 6 -0.2346 -11.4965 0.0049 21 6 0.9438 -10.8337 0.0051 22 7 0.9733 -9.4751 0.0052 23 7 2.0184 -8.5403 0.0042 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8897 26 1 0.6239 -2.5567 0.8903 27 1 2.8711 -3.6040 0.8923 28 1 2.8725 -3.6048 -0.8877 29 1 3.1355 -6.1344 0.0035 30 1 -2.3468 -8.8617 0.0031 31 1 -0.2450 -12.5764 0.0055 32 1 1.8701 -11.3890 0.0055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297678571.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:32 Heat of formation + Delta-G solvation = 74.238074 kcal Electronic energy + Delta-G solvation = -19632.374986 eV Core-core repulsion = 16255.185262 eV Total energy + Delta-G solvation = -3377.189724 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.93165 -41.04717 -39.08959 -35.98336 -35.56951 -34.92989 -33.10479 -32.65592 -31.19052 -30.52331 -27.99271 -25.25245 -24.46613 -24.20041 -22.63251 -21.41207 -19.29634 -18.97848 -18.62475 -17.76229 -17.70509 -17.21952 -16.59199 -16.55183 -16.39419 -15.88954 -15.11046 -14.65514 -14.23768 -14.10268 -13.87830 -13.77117 -13.27699 -13.03395 -12.83496 -12.62259 -12.44756 -12.05597 -11.94359 -11.66725 -11.52886 -11.48980 -11.26026 -11.15960 -10.79618 -10.56872 -9.98206 -9.46484 -8.17321 -6.31185 -0.66220 -0.38960 0.18830 0.65919 1.10553 1.43804 1.45079 1.58277 1.69106 1.84389 2.14900 2.43575 2.73768 3.16365 3.17696 3.51340 3.76803 3.91908 4.08092 4.29258 4.37153 4.51034 4.52024 4.68601 4.84691 5.01806 5.02717 5.35520 5.50412 5.51964 5.61241 5.85332 6.00131 6.16386 6.80301 6.87347 7.11888 7.39099 8.95699 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.028236 B = 0.002092 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.412071 B =13383.473150 C =14354.439689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.975 3.025 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.081 0.919 9 C 0.040 3.960 10 C -0.107 4.107 11 C 0.512 3.488 12 O -0.521 6.521 13 N -0.618 5.618 14 C 0.472 3.528 15 N -0.571 5.571 16 C 0.278 3.722 17 C -0.093 4.093 18 C -0.021 4.021 19 Br 0.005 6.995 20 C -0.127 4.127 21 C 0.130 3.870 22 N -0.282 5.282 23 N -0.361 5.361 24 H 0.262 0.738 25 H -0.015 1.015 26 H -0.016 1.016 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.442 0.558 30 H 0.164 0.836 31 H 0.215 0.785 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.007 -33.449 0.012 33.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.099 0.901 9 C 0.002 3.998 10 C -0.147 4.147 11 C 0.300 3.700 12 O -0.391 6.391 13 N -0.274 5.274 14 C 0.105 3.895 15 N -0.305 5.305 16 C 0.024 3.976 17 C -0.117 4.117 18 C -0.110 4.110 19 Br 0.091 6.909 20 C -0.151 4.151 21 C 0.002 3.998 22 N -0.057 5.057 23 N -0.203 5.203 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.284 0.716 30 H 0.181 0.819 31 H 0.232 0.768 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.005 -33.215 0.014 33.215 hybrid contribution 0.405 1.326 0.000 1.386 sum 0.410 -31.889 0.013 31.892 Atomic orbital electron populations 1.70194 1.08352 1.27732 1.51548 1.26149 0.95710 1.04008 0.94715 0.85259 0.79392 0.78072 0.77424 1.17401 1.20780 1.20790 1.21722 0.94175 0.91270 1.50589 0.90124 1.18738 0.93721 0.92282 0.95038 1.21695 0.99322 0.87514 1.06144 1.22026 0.88469 0.85459 0.74053 1.90795 1.16074 1.86823 1.45413 1.42980 1.11339 0.99848 1.73269 1.20767 0.87380 0.87605 0.93742 1.71043 1.12543 1.15678 1.31281 1.21863 0.90305 0.86783 0.98605 1.20308 0.94744 0.93246 1.03393 1.21963 0.95232 0.93233 1.00529 1.96888 1.23015 1.73970 1.97015 1.21375 0.87013 1.03439 1.03232 1.22450 1.03318 0.77557 0.96498 1.47774 1.05361 1.07681 1.44906 1.78558 1.05576 0.95373 1.40751 0.92899 0.99700 0.99709 0.86405 0.86395 0.71606 0.81861 0.76794 0.76225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.29 21.45 0.28 -59.53 16 2 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 3 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 4 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.54 -30.36 9.11 25.60 0.23 -30.13 16 8 H 0.08 4.08 7.74 -2.91 -0.02 4.06 16 9 C 0.04 2.21 4.26 29.85 0.13 2.34 16 10 C -0.11 -4.20 5.64 29.85 0.17 -4.03 16 11 C 0.51 20.97 7.79 87.66 0.68 21.65 16 12 O -0.52 -27.20 14.63 -3.02 -0.04 -27.25 16 13 N -0.62 -19.94 5.43 -313.14 -1.70 -21.64 16 14 C 0.47 16.67 8.77 260.98 2.29 18.96 16 15 N -0.57 -22.51 9.40 -195.44 -1.84 -24.35 16 16 C 0.28 8.25 7.87 134.06 1.06 9.30 16 17 C -0.09 -2.03 9.84 22.40 0.22 -1.81 16 18 C -0.02 -0.29 6.23 22.34 0.14 -0.15 16 19 Br 0.01 0.06 33.72 -20.37 -0.69 -0.63 16 20 C -0.13 -1.01 9.76 22.08 0.22 -0.79 16 21 C 0.13 1.51 11.19 83.37 0.93 2.45 16 22 N -0.28 -6.79 3.89 -192.99 -0.75 -7.54 16 23 N -0.36 -10.56 12.80 -59.12 -0.76 -11.32 16 24 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 25 H -0.02 -0.97 8.10 -2.39 -0.02 -0.99 16 26 H -0.02 -0.98 8.10 -2.38 -0.02 -1.00 16 27 H 0.12 3.91 8.14 -2.39 -0.02 3.90 16 28 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 29 H 0.44 10.02 8.82 -92.71 -0.82 9.20 16 30 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 31 H 0.22 -0.23 8.06 -2.91 -0.02 -0.25 16 32 H 0.22 0.67 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -87.32 311.48 3.42 -83.89 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 0.36 Total: 4.30 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 6.53 Total: 17.75 kcal Atomic # 7 Polarization: -119.62 SS G_CDS: -4.76 Total: -124.38 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.04 Total: -27.25 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -0.69 Total: -0.63 kcal Total: -87.32 3.42 -83.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297678571.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.132 kcal (2) G-P(sol) polarization free energy of solvation -87.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds