Wall clock time and date at job start Tue Mar 31 2020 20:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39741 * 120.17971 * 155.07444 * 3 2 1 5 5 C 1.37779 * 119.91094 * 179.97438 * 4 3 2 6 6 C 1.38629 * 120.28764 * 359.97438 * 5 4 3 7 7 Br 1.89100 * 119.81536 * 180.02562 * 6 5 4 8 8 C 1.38215 * 120.36909 * 359.78985 * 6 5 4 9 9 C 1.38608 * 120.07996 * 0.46616 * 8 6 5 10 10 O 1.35702 * 120.14320 * 179.78513 * 9 8 6 11 11 C 1.42906 * 116.99668 * 359.73165 * 10 9 8 12 12 C 1.50706 * 109.46699 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00042 * 359.71986 * 12 11 10 14 14 N 1.34777 * 119.99766 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00266 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47317 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00370 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99790 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99980 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99622 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47409 * 59.99864 * 20 18 16 22 22 H 1.48506 * 109.46650 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47066 * 299.99495 * 20 18 16 24 24 H 1.08000 * 120.04636 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.85640 * 179.97438 * 5 4 3 26 26 H 1.07994 * 119.96096 * 180.25608 * 8 6 5 27 27 H 1.09000 * 109.47490 * 59.99592 * 11 10 9 28 28 H 1.09001 * 109.47232 * 299.98946 * 11 10 9 29 29 H 0.96999 * 120.00043 * 0.02562 * 14 12 11 30 30 H 1.09004 * 109.47212 * 300.00463 * 15 14 12 31 31 H 1.09000 * 109.46684 * 60.00307 * 15 14 12 32 32 H 0.97002 * 119.99804 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 1.0964 -0.5091 5 6 4.6478 1.0914 -0.5059 6 6 5.3418 0.0036 0.0010 7 35 7.2328 0.0112 -0.0006 8 6 4.6594 -1.0843 0.5118 9 6 3.2733 -1.0977 0.5113 10 8 2.6020 -2.1670 1.0086 11 6 3.3877 -3.2492 1.5124 12 6 2.4769 -4.3377 2.0192 13 8 1.2737 -4.1981 1.9599 14 7 2.9997 -5.4641 2.5431 15 6 2.1145 -6.5221 3.0363 16 6 2.9430 -7.6633 3.5675 17 1 4.0211 -7.6062 3.5408 18 6 2.3245 -8.7805 4.0876 19 7 1.0116 -8.8499 4.1205 20 14 3.3515 -10.1948 4.7466 21 1 4.2080 -9.7088 5.8581 22 1 2.4540 -11.2673 5.2465 23 1 4.2087 -10.7326 3.6598 24 1 2.7333 1.9461 -0.9045 25 1 5.1895 1.9386 -0.9000 26 1 5.2067 -1.9264 0.9088 27 1 4.0164 -2.8927 2.3284 28 1 4.0169 -3.6437 0.7145 29 1 3.9621 -5.5740 2.5942 30 1 1.4861 -6.1273 3.8347 31 1 1.4849 -6.8784 2.2209 32 1 0.5765 -9.6361 4.4860 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308146725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:47 Heat of formation + Delta-G solvation = -16.400612 kcal Electronic energy + Delta-G solvation = -19410.873696 eV Core-core repulsion = 15997.460833 eV Total energy + Delta-G solvation = -3413.412863 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88000 -39.05657 -37.67423 -36.52186 -34.33636 -32.96932 -32.46505 -30.93396 -30.24302 -28.95860 -26.73752 -23.98394 -23.27299 -22.33142 -20.15704 -19.61129 -17.99120 -17.53694 -16.56433 -16.46892 -15.68519 -15.52991 -15.15004 -14.78808 -14.62420 -14.41469 -13.75349 -13.50677 -13.29912 -13.08859 -13.03942 -12.75155 -12.17098 -12.12071 -12.04482 -11.67332 -11.53069 -11.06806 -10.94738 -10.89164 -10.79671 -10.38519 -9.50306 -9.41284 -9.27924 -8.82666 -8.75279 -8.05838 -6.22975 -4.31202 0.11812 0.76848 1.03562 2.46387 2.53211 2.59313 3.06441 3.21279 3.26479 3.27854 3.46165 3.62161 3.92082 4.22537 4.30680 4.42251 4.54116 4.81344 4.85486 4.96936 4.98984 5.13284 5.23321 5.32961 5.56571 5.61890 5.93834 6.76537 7.17725 7.24088 7.40807 7.41976 7.55178 7.87701 8.41989 8.65300 8.89067 9.35313 10.87057 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.002664 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.187685 B =10509.669731 C =12562.407940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.255 3.745 3 C -0.044 4.044 4 C -0.025 4.025 5 C -0.135 4.135 6 C -0.024 4.024 7 Br -0.035 7.035 8 C -0.187 4.187 9 C 0.189 3.811 10 O -0.273 6.273 11 C 0.034 3.966 12 C 0.499 3.501 13 O -0.529 6.529 14 N -0.705 5.705 15 C 0.251 3.749 16 C -0.547 4.547 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.906 3.094 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.150 0.850 25 H 0.145 0.855 26 H 0.151 0.849 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.393 0.607 30 H 0.030 0.970 31 H 0.030 0.970 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.654 22.041 -10.265 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.074 5.074 2 C -0.061 4.061 3 C -0.048 4.048 4 C -0.046 4.046 5 C -0.155 4.155 6 C -0.105 4.105 7 Br 0.051 6.949 8 C -0.208 4.208 9 C 0.138 3.862 10 O -0.183 6.183 11 C -0.045 4.045 12 C 0.281 3.719 13 O -0.405 6.405 14 N -0.355 5.355 15 C 0.131 3.869 16 C -0.586 4.586 17 H 0.082 0.918 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.733 3.267 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.168 0.832 25 H 0.163 0.837 26 H 0.169 0.831 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.225 0.775 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 14.331 21.928 -10.207 28.114 hybrid contribution 1.275 -1.048 0.484 1.720 sum 15.605 20.880 -9.723 27.822 Atomic orbital electron populations 1.81251 1.11807 1.06697 1.07685 1.25148 0.92141 0.94414 0.94417 1.15393 0.85169 0.95465 1.08798 1.21028 0.93369 0.95807 0.94378 1.20928 0.93588 0.98354 1.02656 1.21800 0.91150 0.96672 1.00862 1.96818 1.01549 1.98925 1.97615 1.21186 0.92383 1.00657 1.06525 1.18926 0.89809 0.86715 0.90747 1.86248 1.34358 1.24686 1.73042 1.22866 0.94435 0.86883 1.00307 1.19771 0.88881 0.83202 0.80022 1.90752 1.14871 1.79227 1.55700 1.46350 1.11159 1.17520 1.60492 1.19185 0.89579 0.83245 0.94859 1.21150 0.93166 1.01674 1.42574 0.91790 1.24959 0.95069 0.98522 0.95411 1.69963 1.08097 1.29689 1.44339 0.86445 0.79787 0.81236 0.79269 1.20006 1.21025 1.20002 0.83218 0.83684 0.83123 0.88569 0.88573 0.77459 0.95239 0.95239 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.48 18.54 41.84 0.78 -5.70 16 2 C 0.25 3.42 14.87 -22.47 -0.33 3.09 16 3 C -0.04 -0.44 5.75 -106.68 -0.61 -1.06 16 4 C -0.02 -0.16 9.75 -39.19 -0.38 -0.54 16 5 C -0.14 -0.79 9.76 -39.60 -0.39 -1.18 16 6 C -0.02 -0.17 6.23 -39.45 -0.25 -0.42 16 7 Br -0.04 -0.24 33.69 -68.01 -2.29 -2.53 16 8 C -0.19 -1.55 8.76 -39.45 -0.35 -1.89 16 9 C 0.19 2.05 6.69 -38.71 -0.26 1.79 16 10 O -0.27 -3.94 9.10 -38.72 -0.35 -4.29 16 11 C 0.03 0.42 5.22 36.01 0.19 0.61 16 12 C 0.50 9.46 7.91 -10.98 -0.09 9.38 16 13 O -0.53 -12.92 16.50 -14.35 -0.24 -13.16 16 14 N -0.70 -13.76 5.55 -61.47 -0.34 -14.10 16 15 C 0.25 6.44 5.43 -5.20 -0.03 6.41 16 16 C -0.55 -14.33 9.28 -34.44 -0.32 -14.65 16 17 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.88 -25.65 13.29 55.43 0.74 -24.92 16 20 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 25 H 0.15 0.52 8.06 -52.48 -0.42 0.10 16 26 H 0.15 1.01 6.30 -52.49 -0.33 0.68 16 27 H 0.10 0.89 7.65 -51.93 -0.40 0.50 16 28 H 0.10 0.89 7.67 -51.93 -0.40 0.49 16 29 H 0.39 6.17 8.32 -40.82 -0.34 5.83 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 320.86 15.07 4.84 4.84 Total: -1.00 -34.39 320.86 -7.50 -41.89 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -2.69 Total: -0.52 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -2.91 Total: 3.20 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 1.17 Total: -44.72 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.59 Total: -17.45 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -2.29 Total: -2.53 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.39 -7.50 -41.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308146725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.487 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds