Wall clock time and date at job start Tue Mar 31 2020 20:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39741 * 120.17971 * 155.07444 * 3 2 1 5 5 C 1.37779 * 119.91094 * 179.97438 * 4 3 2 6 6 C 1.38629 * 120.28764 * 359.97438 * 5 4 3 7 7 Br 1.89100 * 119.81536 * 180.02562 * 6 5 4 8 8 C 1.38215 * 120.36909 * 359.78985 * 6 5 4 9 9 C 1.38608 * 120.07996 * 0.46616 * 8 6 5 10 10 O 1.35702 * 120.14320 * 179.78513 * 9 8 6 11 11 C 1.42906 * 116.99668 * 359.73165 * 10 9 8 12 12 C 1.50706 * 109.46699 * 179.97438 * 11 10 9 13 13 O 1.21274 * 120.00042 * 359.71986 * 12 11 10 14 14 N 1.34777 * 119.99766 * 179.97438 * 12 11 10 15 15 C 1.46496 * 120.00266 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47317 * 180.02562 * 15 14 12 17 17 H 1.07996 * 120.00370 * 0.02562 * 16 15 14 18 18 C 1.37882 * 119.99790 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99980 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99622 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47409 * 59.99864 * 20 18 16 22 22 H 1.48506 * 109.46650 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47066 * 299.99495 * 20 18 16 24 24 H 1.08000 * 120.04636 * 359.97438 * 4 3 2 25 25 H 1.08003 * 119.85640 * 179.97438 * 5 4 3 26 26 H 1.07994 * 119.96096 * 180.25608 * 8 6 5 27 27 H 1.09000 * 109.47490 * 59.99592 * 11 10 9 28 28 H 1.09001 * 109.47232 * 299.98946 * 11 10 9 29 29 H 0.96999 * 120.00043 * 0.02562 * 14 12 11 30 30 H 1.09004 * 109.47212 * 300.00463 * 15 14 12 31 31 H 1.09000 * 109.46684 * 60.00307 * 15 14 12 32 32 H 0.97002 * 119.99804 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2700 1.0964 -0.5091 5 6 4.6478 1.0914 -0.5059 6 6 5.3418 0.0036 0.0010 7 35 7.2328 0.0112 -0.0006 8 6 4.6594 -1.0843 0.5118 9 6 3.2733 -1.0977 0.5113 10 8 2.6020 -2.1670 1.0086 11 6 3.3877 -3.2492 1.5124 12 6 2.4769 -4.3377 2.0192 13 8 1.2737 -4.1981 1.9599 14 7 2.9997 -5.4641 2.5431 15 6 2.1145 -6.5221 3.0363 16 6 2.9430 -7.6633 3.5675 17 1 4.0211 -7.6062 3.5408 18 6 2.3245 -8.7805 4.0876 19 7 1.0116 -8.8499 4.1205 20 14 3.3515 -10.1948 4.7466 21 1 4.2080 -9.7088 5.8581 22 1 2.4540 -11.2673 5.2465 23 1 4.2087 -10.7326 3.6598 24 1 2.7333 1.9461 -0.9045 25 1 5.1895 1.9386 -0.9000 26 1 5.2067 -1.9264 0.9088 27 1 4.0164 -2.8927 2.3284 28 1 4.0169 -3.6437 0.7145 29 1 3.9621 -5.5740 2.5942 30 1 1.4861 -6.1273 3.8347 31 1 1.4849 -6.8784 2.2209 32 1 0.5765 -9.6361 4.4860 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308146725.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:47 Heat of formation + Delta-G solvation = -40.133044 kcal Electronic energy + Delta-G solvation = -19411.902812 eV Core-core repulsion = 15997.460833 eV Total energy + Delta-G solvation = -3414.441979 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.73370 -40.44702 -38.67201 -37.55806 -36.21620 -34.43292 -33.61813 -31.66740 -30.98383 -30.24096 -28.37803 -24.89458 -24.59844 -23.47896 -21.66726 -20.52562 -19.17205 -18.73917 -17.80272 -17.57740 -17.03050 -16.94804 -16.20354 -15.95755 -15.94154 -15.45221 -14.97409 -14.81802 -14.28120 -14.14856 -14.09186 -13.99226 -13.85030 -13.73240 -12.96898 -12.84922 -12.69330 -12.52398 -12.37677 -12.23240 -11.55083 -11.53305 -11.31606 -10.91794 -10.81071 -10.01027 -9.94590 -9.45939 -8.29885 -6.47235 -0.55342 0.17355 0.48222 1.42216 1.48330 1.48797 1.56518 1.57174 1.58426 1.74132 2.36212 2.64375 2.69269 2.79503 3.05532 3.56563 3.68394 3.88225 3.99591 4.06055 4.07617 4.20779 4.49386 4.72037 5.00944 5.06714 5.07399 5.19594 5.39590 5.41577 5.61932 5.81151 5.99000 6.42659 6.62623 6.78549 7.21109 7.38394 8.82187 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.002664 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.187685 B =10509.669731 C =12562.407940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.276 3.724 3 C -0.066 4.066 4 C -0.007 4.007 5 C -0.121 4.121 6 C -0.025 4.025 7 Br -0.025 7.025 8 C -0.182 4.182 9 C 0.173 3.827 10 O -0.315 6.315 11 C 0.048 3.952 12 C 0.493 3.507 13 O -0.594 6.594 14 N -0.695 5.695 15 C 0.266 3.734 16 C -0.556 4.556 17 H 0.091 0.909 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.986 3.014 21 H -0.260 1.260 22 H -0.289 1.289 23 H -0.260 1.260 24 H 0.179 0.821 25 H 0.176 0.824 26 H 0.169 0.831 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.415 0.585 30 H -0.012 1.012 31 H -0.012 1.012 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.136 23.162 -10.788 33.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.038 4.038 3 C -0.071 4.071 4 C -0.028 4.028 5 C -0.140 4.140 6 C -0.105 4.105 7 Br 0.061 6.939 8 C -0.203 4.203 9 C 0.122 3.878 10 O -0.227 6.227 11 C -0.029 4.029 12 C 0.279 3.721 13 O -0.475 6.475 14 N -0.347 5.347 15 C 0.144 3.856 16 C -0.593 4.593 17 H 0.109 0.891 18 C -0.197 4.197 19 N -0.572 5.572 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.215 1.215 23 H -0.184 1.184 24 H 0.196 0.804 25 H 0.194 0.806 26 H 0.186 0.814 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.252 0.748 30 H 0.006 0.994 31 H 0.006 0.994 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 18.894 23.086 -10.748 31.709 hybrid contribution -0.032 -1.259 0.583 1.388 sum 18.862 21.827 -10.165 30.587 Atomic orbital electron populations 1.81251 1.13788 1.08899 1.10301 1.25789 0.92915 0.92553 0.92558 1.15703 0.83414 0.97064 1.10924 1.21336 0.93706 0.95114 0.92620 1.21310 0.93182 0.98638 1.00900 1.22006 0.91750 0.96632 1.00155 1.96857 1.00601 1.98891 1.97517 1.21294 0.91084 1.01622 1.06270 1.19042 0.90805 0.85926 0.91982 1.86172 1.36250 1.25995 1.74253 1.22797 0.92328 0.84890 1.02901 1.20942 0.88980 0.83909 0.78247 1.90723 1.18262 1.80538 1.57950 1.45976 1.11593 1.16773 1.60369 1.18588 0.89897 0.84942 0.92217 1.21596 0.94423 1.01483 1.41827 0.89120 1.26107 0.96191 1.01881 0.95570 1.70145 1.10527 1.30737 1.45770 0.85182 0.77883 0.76943 0.79066 1.18438 1.21484 1.18422 0.80417 0.80628 0.81386 0.84480 0.84477 0.74771 0.99444 0.99436 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.98 18.54 19.00 0.35 -15.63 16 2 C 0.28 7.61 14.87 88.33 1.31 8.92 16 3 C -0.07 -1.26 5.75 -21.20 -0.12 -1.38 16 4 C -0.01 -0.07 9.75 22.52 0.22 0.15 16 5 C -0.12 -0.90 9.76 22.25 0.22 -0.68 16 6 C -0.02 -0.26 6.23 22.36 0.14 -0.12 16 7 Br -0.02 -0.24 33.69 -20.37 -0.69 -0.93 16 8 C -0.18 -2.40 8.76 22.35 0.20 -2.20 16 9 C 0.17 3.44 6.69 22.83 0.15 3.60 16 10 O -0.31 -8.92 9.10 -71.18 -0.65 -9.57 16 11 C 0.05 1.11 5.22 71.24 0.37 1.48 16 12 C 0.49 18.99 7.91 87.66 0.69 19.69 16 13 O -0.59 -30.79 16.50 16.03 0.26 -30.52 16 14 N -0.70 -27.29 5.55 -466.79 -2.59 -29.88 16 15 C 0.27 14.29 5.43 85.63 0.46 14.75 16 16 C -0.56 -29.18 9.28 25.60 0.24 -28.94 16 17 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.11 5.46 84.66 0.46 0.58 16 19 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 20 Si 0.99 41.26 29.54 68.60 2.03 43.28 16 21 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 23 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 24 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 25 H 0.18 0.31 8.06 -2.91 -0.02 0.28 16 26 H 0.17 1.52 6.30 -2.91 -0.02 1.50 16 27 H 0.14 2.04 7.65 -2.39 -0.02 2.02 16 28 H 0.14 2.04 7.67 -2.39 -0.02 2.02 16 29 H 0.42 12.28 8.32 -92.71 -0.77 11.51 16 30 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 31 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 32 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -82.46 320.86 3.77 -78.69 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 0.42 Total: 4.54 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 4.35 Total: 15.84 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -1.95 Total: -101.34 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -0.38 Total: -40.09 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 35 Polarization: -0.24 SS G_CDS: -0.69 Total: -0.93 kcal Total: -82.46 3.77 -78.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308146725.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.559 kcal (2) G-P(sol) polarization free energy of solvation -82.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds