Wall clock time and date at job start Tue Mar 31 2020 20:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.50707 * 109.47168 * 165.00185 * 18 17 14 20 20 C 1.33344 * 125.19169 * 89.99988 * 19 18 17 21 21 C 1.38469 * 114.92745 * 180.02562 * 20 19 18 22 22 C 1.33500 * 114.88913 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 125.21269 * 179.97438 * 22 21 20 24 24 S 1.75879 * 125.18247 * 269.69038 * 19 18 17 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 30 30 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 31 31 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 32 32 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 33 33 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 34 34 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 35 35 H 1.08001 * 122.53285 * 359.97061 * 20 19 18 36 36 H 1.08003 * 122.55808 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6349 -1.3327 -1.7352 20 6 7.3260 -1.3275 -0.5948 21 6 8.6980 -1.2147 -0.7444 22 6 9.1202 -1.1288 -2.0080 23 17 10.7778 -0.9787 -2.5015 24 16 7.7402 -1.1975 -3.0965 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1611 3.4845 29 1 0.7376 -2.1442 -1.9996 30 1 2.4629 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4711 32 1 5.0733 0.6551 -1.5281 33 1 4.7540 -2.0247 -1.0019 34 1 4.8736 -1.9405 -2.7759 35 1 6.8515 -1.4046 0.3723 36 1 9.3749 -1.1975 0.0969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330422805.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:05 Heat of formation + Delta-G solvation = -47.283396 kcal Electronic energy + Delta-G solvation = -22973.070825 eV Core-core repulsion = 19350.943292 eV Total energy + Delta-G solvation = -3622.127533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -38.42477 -36.98409 -36.72948 -36.19986 -35.31714 -34.96714 -32.65019 -29.88361 -29.13080 -25.85022 -25.50790 -25.22575 -23.20092 -20.84590 -19.67983 -19.02607 -18.03914 -17.16698 -16.73605 -16.42863 -16.01755 -15.78203 -15.05175 -14.38719 -14.13367 -13.94006 -13.55330 -13.42851 -13.27721 -13.11549 -12.78282 -12.38230 -12.05918 -11.92164 -11.80373 -11.59498 -11.51408 -11.42266 -11.27354 -11.25679 -11.01862 -10.92694 -10.89589 -10.47703 -10.26750 -10.12911 -9.47221 -9.22817 -8.85602 -8.74788 -8.52993 -8.02390 -6.13949 -4.22857 0.49263 0.85797 1.21328 1.60132 1.99081 2.39002 3.20471 3.28075 3.28956 3.47973 4.07922 4.30739 4.44225 4.90390 4.98489 5.12335 5.16813 5.36845 5.42889 5.58339 5.72113 5.84657 5.97842 6.10889 6.13174 6.28514 6.61094 6.83595 6.83938 7.06849 7.14312 7.46386 7.57646 7.73922 8.00489 8.21019 8.79750 9.43594 10.91083 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.003753 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.962429 B = 7458.975219 C = 8985.303499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.527 4.527 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.286 1.286 12 N -0.989 5.989 13 C 0.104 3.896 14 S 2.782 3.218 15 O -0.997 6.997 16 O -0.977 6.977 17 N -1.126 6.126 18 C 0.193 3.807 19 C -0.177 4.177 20 C -0.112 4.112 21 C -0.116 4.116 22 C -0.152 4.152 23 Cl -0.019 7.019 24 S 0.161 5.839 25 H 0.032 0.968 26 H 0.092 0.908 27 H 0.012 0.988 28 H 0.264 0.736 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.416 0.584 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.664 -6.075 -7.526 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.566 4.566 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.832 5.832 13 C -0.042 4.042 14 S 2.790 3.210 15 O -0.981 6.981 16 O -0.961 6.961 17 N -0.884 5.884 18 C 0.065 3.935 19 C -0.297 4.297 20 C -0.144 4.144 21 C -0.149 4.149 22 C -0.296 4.296 23 Cl 0.010 6.990 24 S 0.424 5.576 25 H 0.051 0.949 26 H 0.111 0.889 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.249 0.751 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.174 0.826 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.149 -5.562 -9.856 17.349 hybrid contribution 1.105 -0.376 2.973 3.194 sum 14.254 -5.938 -6.883 16.906 Atomic orbital electron populations 1.22058 0.97942 0.99681 1.00786 1.18737 0.91896 0.92765 0.80090 0.92319 1.21355 1.32004 1.13112 0.90135 0.91894 1.24928 0.94957 0.94935 0.98996 1.69881 1.36142 1.22509 1.23850 0.86535 0.79128 0.79329 0.82559 1.20670 1.19959 1.21216 1.57715 1.64244 1.21422 1.39835 1.21229 0.99089 0.82000 1.01914 1.01856 0.72495 0.73252 0.73354 1.93544 1.85938 1.76395 1.42175 1.93605 1.83397 1.32317 1.86813 1.56188 1.32378 1.14286 1.85579 1.19620 0.85650 0.84883 1.03331 1.24624 0.99375 1.09852 0.95815 1.20155 0.92424 1.02100 0.99694 1.20227 0.96194 1.02591 0.95870 1.25326 0.90840 1.15459 0.98018 1.98364 1.13109 1.96469 1.91104 1.84543 0.93519 1.71728 1.07846 0.94851 0.88909 0.96873 0.92600 0.93734 0.93284 0.90068 0.75092 0.88970 0.89582 0.82643 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.97 37.16 0.33 -3.03 16 2 C 0.27 6.28 2.62 -69.09 -0.18 6.10 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.53 -12.85 7.99 -34.44 -0.28 -13.13 16 5 H 0.06 1.47 7.33 -52.49 -0.38 1.08 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.73 11.32 55.43 0.63 -23.10 16 8 Si 0.90 19.65 29.54 -169.99 -5.02 14.62 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.99 -19.35 3.12 -115.85 -0.36 -19.71 16 13 C 0.10 1.72 9.28 59.85 0.56 2.28 16 14 S 2.78 51.90 6.09 -107.50 -0.66 51.25 16 15 O -1.00 -19.43 16.68 -57.17 -0.95 -20.39 16 16 O -0.98 -21.64 16.70 -57.17 -0.95 -22.59 16 17 N -1.13 -16.78 6.05 -11.65 -0.07 -16.85 16 18 C 0.19 2.43 6.73 -5.19 -0.03 2.40 16 19 C -0.18 -2.04 5.90 -36.01 -0.21 -2.25 16 20 C -0.11 -1.21 10.05 -41.21 -0.41 -1.63 16 21 C -0.12 -1.17 10.13 -41.15 -0.42 -1.59 16 22 C -0.15 -1.60 7.10 29.07 0.21 -1.39 16 23 Cl -0.02 -0.18 29.29 -51.86 -1.52 -1.70 16 24 S 0.16 1.74 23.33 -107.50 -2.51 -0.77 16 25 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 26 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.67 7.79 -51.92 -0.40 0.27 16 31 H 0.08 1.36 7.02 -51.93 -0.36 0.99 16 32 H 0.42 5.75 8.64 -34.47 -0.30 5.45 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.03 7.75 -51.93 -0.40 0.62 16 35 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -29.80 345.56 -10.92 -40.72 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.18 Total: 4.00 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -0.53 Total: -10.69 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.20 Total: -59.67 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.91 Total: -42.98 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 53.64 SS G_CDS: -3.16 Total: 50.47 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.52 Total: -1.70 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.80 -10.92 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330422805.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.563 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds