Wall clock time and date at job start Tue Mar 31 2020 20:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.50707 * 109.47168 * 165.00185 * 18 17 14 20 20 C 1.33344 * 125.19169 * 89.99988 * 19 18 17 21 21 C 1.38469 * 114.92745 * 180.02562 * 20 19 18 22 22 C 1.33500 * 114.88913 * 359.97438 * 21 20 19 23 23 Cl 1.73600 * 125.21269 * 179.97438 * 22 21 20 24 24 S 1.75879 * 125.18247 * 269.69038 * 19 18 17 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 30 30 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 31 31 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 32 32 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 33 33 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 34 34 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 35 35 H 1.08001 * 122.53285 * 359.97061 * 20 19 18 36 36 H 1.08003 * 122.55808 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6349 -1.3327 -1.7352 20 6 7.3260 -1.3275 -0.5948 21 6 8.6980 -1.2147 -0.7444 22 6 9.1202 -1.1288 -2.0080 23 17 10.7778 -0.9787 -2.5015 24 16 7.7402 -1.1975 -3.0965 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1611 3.4845 29 1 0.7376 -2.1442 -1.9996 30 1 2.4629 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4711 32 1 5.0733 0.6551 -1.5281 33 1 4.7540 -2.0247 -1.0019 34 1 4.8736 -1.9405 -2.7759 35 1 6.8515 -1.4046 0.3723 36 1 9.3749 -1.1975 0.0969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330422805.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:04 Heat of formation + Delta-G solvation = -66.933356 kcal Electronic energy + Delta-G solvation = -22973.922911 eV Core-core repulsion = 19350.943292 eV Total energy + Delta-G solvation = -3622.979619 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.031 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.26897 -38.34352 -37.87832 -37.73844 -36.90913 -36.05595 -34.46991 -30.89811 -30.83997 -27.22723 -26.99991 -26.68723 -24.07371 -22.60178 -20.51878 -20.43207 -19.14556 -18.64705 -18.22547 -18.11690 -17.24913 -16.86783 -16.56773 -15.89182 -15.16683 -15.08116 -14.83388 -14.75196 -14.43642 -14.36785 -14.03238 -13.68988 -13.44409 -13.39176 -13.21294 -13.13761 -12.96714 -12.92789 -12.69990 -12.61228 -12.48226 -12.19059 -12.15255 -12.08867 -11.85854 -11.71881 -11.15937 -10.53243 -10.45704 -9.73901 -9.59980 -9.57113 -8.05043 -6.19744 -0.48447 -0.13619 0.05414 0.77448 1.18867 1.49390 1.51222 1.55265 1.59734 2.07592 2.49516 2.63565 3.24189 3.38263 3.60328 4.04249 4.11151 4.30520 4.51577 4.57159 4.72534 4.75158 4.84166 4.91431 5.00040 5.06378 5.10663 5.19168 5.30782 5.31910 5.64636 5.69704 5.87418 6.03539 6.16044 6.32645 6.90085 7.50181 8.99659 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.013118 B = 0.003753 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.962429 B = 7458.975219 C = 8985.303499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.526 4.526 5 H 0.076 0.924 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.260 1.260 11 H -0.294 1.294 12 N -0.994 5.994 13 C 0.096 3.904 14 S 2.799 3.201 15 O -1.004 7.004 16 O -1.017 7.017 17 N -1.117 6.117 18 C 0.188 3.812 19 C -0.190 4.190 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.157 4.157 23 Cl -0.011 7.011 24 S 0.157 5.843 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.017 0.983 28 H 0.262 0.738 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.421 0.579 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.163 0.837 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.202 -7.804 -7.340 18.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.565 4.565 5 H 0.094 0.906 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.784 3.216 9 H -0.205 1.205 10 H -0.184 1.184 11 H -0.220 1.220 12 N -0.836 5.836 13 C -0.050 4.050 14 S 2.808 3.192 15 O -0.988 6.988 16 O -1.001 7.001 17 N -0.879 5.879 18 C 0.061 3.939 19 C -0.309 4.309 20 C -0.140 4.140 21 C -0.149 4.149 22 C -0.301 4.301 23 Cl 0.017 6.983 24 S 0.420 5.580 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.256 0.744 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.181 0.819 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 14.693 -7.317 -9.697 19.065 hybrid contribution 0.706 0.146 2.846 2.936 sum 15.399 -7.171 -6.851 18.316 Atomic orbital electron populations 1.21957 0.98120 1.00078 0.99829 1.18392 0.91783 0.91463 0.81462 0.95771 1.21650 1.31424 1.13092 0.90341 0.90604 1.25697 0.95264 0.95555 1.01903 1.70030 1.37645 1.24122 1.24200 0.85557 0.79145 0.77996 0.78879 1.20483 1.18395 1.22001 1.57580 1.64974 1.22580 1.38516 1.21462 1.00651 0.80380 1.02472 1.01158 0.72978 0.72051 0.73027 1.93530 1.86463 1.76291 1.42483 1.93549 1.84449 1.34870 1.87257 1.55876 1.30945 1.15790 1.85308 1.19808 0.86453 0.83432 1.04228 1.24504 0.98786 1.11242 0.96362 1.20317 0.92760 1.01111 0.99772 1.20425 0.96209 1.01983 0.96314 1.25446 0.91165 1.15326 0.98142 1.98369 1.12439 1.96414 1.91067 1.84547 0.93756 1.71815 1.07866 0.93653 0.91305 0.96415 0.92907 0.93157 0.90279 0.90129 0.74413 0.88014 0.88811 0.81933 0.81449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.54 8.97 71.98 0.65 -5.90 16 2 C 0.27 12.83 2.62 44.24 0.12 12.94 16 3 H 0.02 1.31 6.91 -2.39 -0.02 1.30 16 4 C -0.53 -25.18 7.99 25.60 0.20 -24.97 16 5 H 0.08 3.36 7.33 -2.91 -0.02 3.34 16 6 C 0.02 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -49.97 11.32 21.45 0.24 -49.73 16 8 Si 0.96 39.55 29.54 68.60 2.03 41.58 16 9 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 11 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.99 -37.95 3.12 -520.45 -1.62 -39.57 16 13 C 0.10 2.96 9.28 127.77 1.19 4.15 16 14 S 2.80 102.59 6.09 -56.49 -0.34 102.24 16 15 O -1.00 -37.77 16.68 -128.00 -2.14 -39.91 16 16 O -1.02 -45.65 16.70 -128.00 -2.14 -47.78 16 17 N -1.12 -31.93 6.05 -190.78 -1.15 -33.08 16 18 C 0.19 4.33 6.73 85.64 0.58 4.91 16 19 C -0.19 -3.97 5.90 24.58 0.15 -3.83 16 20 C -0.11 -2.07 10.05 21.22 0.21 -1.86 16 21 C -0.12 -2.08 10.13 21.25 0.22 -1.86 16 22 C -0.16 -2.98 7.10 66.75 0.47 -2.50 16 23 Cl -0.01 -0.20 29.29 -2.72 -0.08 -0.28 16 24 S 0.16 3.14 23.33 -56.49 -1.32 1.82 16 25 H 0.04 1.94 7.67 -2.39 -0.02 1.92 16 26 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 27 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.26 13.64 8.31 -92.71 -0.77 12.87 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.95 7.79 -2.38 -0.02 1.93 16 31 H 0.08 2.51 7.02 -2.39 -0.02 2.49 16 32 H 0.42 11.28 8.64 -96.75 -0.84 10.44 16 33 H 0.10 2.16 8.14 -2.39 -0.02 2.15 16 34 H 0.09 2.02 7.75 -2.39 -0.02 2.00 16 35 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 36 H 0.17 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -62.73 345.56 -2.01 -64.75 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.28 Total: 17.67 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 4.23 Total: -17.71 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -2.53 Total: -122.38 kcal Atomic # 8 Polarization: -83.42 SS G_CDS: -4.27 Total: -87.69 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Atomic # 16 Polarization: 105.73 SS G_CDS: -1.66 Total: 104.06 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -62.73 -2.01 -64.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330422805.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.186 kcal (2) G-P(sol) polarization free energy of solvation -62.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds