Wall clock time and date at job start Tue Mar 31 2020 21:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86804 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47500 * 240.00126 * 3 2 1 5 5 H 1.48499 * 109.47001 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47007 * 119.99881 * 3 2 1 7 7 C 1.38944 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00320 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99820 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00243 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99760 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00419 * 179.97438 * 10 9 7 13 13 N 1.46499 * 109.47664 * 180.02562 * 12 10 9 14 14 C 1.39957 * 120.00117 * 180.02562 * 13 12 10 15 15 C 1.38718 * 120.08294 * 0.02562 * 14 13 12 16 16 C 1.38324 * 119.96355 * 179.97438 * 15 14 13 17 17 Cl 1.73600 * 119.92990 * 179.97438 * 16 15 14 18 18 C 1.38357 * 120.13624 * 0.02562 * 16 15 14 19 19 C 1.38277 * 120.16784 * 359.95561 * 18 16 15 20 20 C 1.38493 * 120.03154 * 0.04500 * 19 18 16 21 21 O 1.36029 * 120.07056 * 180.25608 * 20 19 18 22 22 C 1.42906 * 116.99741 * 359.72098 * 21 20 19 23 23 F 1.39902 * 109.46931 * 60.00196 * 22 21 20 24 24 F 1.39900 * 109.47020 * 180.02562 * 22 21 20 25 25 F 1.39897 * 109.47143 * 300.00246 * 22 21 20 26 26 H 0.97008 * 120.00384 * 0.02562 * 1 2 3 27 27 H 0.97001 * 119.99669 * 0.02562 * 9 7 2 28 28 H 1.09004 * 109.47045 * 60.00121 * 12 10 9 29 29 H 1.09007 * 109.47077 * 300.00746 * 12 10 9 30 30 H 0.97001 * 119.99701 * 0.02562 * 13 12 10 31 31 H 1.07997 * 120.01946 * 359.95732 * 15 14 13 32 32 H 1.08002 * 119.91265 * 179.97438 * 18 16 15 33 33 H 1.07999 * 119.98468 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5577 -0.0016 11 8 3.2102 -3.5577 -0.0021 12 6 1.2439 -4.8629 -0.0010 13 7 2.1959 -5.9764 -0.0017 14 6 1.7294 -7.2959 -0.0019 15 6 0.3660 -7.5514 -0.0019 16 6 -0.0924 -8.8565 -0.0026 17 17 -1.7989 -9.1752 -0.0020 18 6 0.8064 -9.9084 -0.0028 19 6 2.1667 -9.6601 -0.0032 20 6 2.6332 -8.3561 -0.0025 21 8 3.9712 -8.1109 -0.0081 22 6 4.8388 -9.2465 -0.0084 23 9 4.5937 -10.0203 -1.1478 24 9 6.1700 -8.8162 -0.0139 25 9 4.6022 -10.0145 1.1367 26 1 -0.4851 0.8401 -0.0004 27 1 0.3534 -2.3905 -0.0005 28 1 0.6163 -4.9205 -0.8903 29 1 0.6182 -4.9208 0.8897 30 1 3.1496 -5.7991 -0.0021 31 1 -0.3373 -6.7318 -0.0011 32 1 0.4445 -10.9260 -0.0030 33 1 2.8656 -10.4834 -0.0037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336885054.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:42 Heat of formation + Delta-G solvation = -209.134829 kcal Electronic energy + Delta-G solvation = -26314.584387 eV Core-core repulsion = 21565.384887 eV Total energy + Delta-G solvation = -4749.199501 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.043 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.59250 -48.30014 -48.19313 -40.57439 -38.60489 -37.97534 -36.57382 -35.20550 -34.03652 -31.46605 -30.44252 -30.00379 -26.91717 -26.15508 -24.58567 -22.88846 -22.16893 -20.05001 -19.43247 -19.30779 -19.22949 -18.16504 -17.71499 -16.56235 -16.31617 -15.69730 -15.50817 -15.02053 -14.96058 -14.88515 -14.76305 -14.62382 -14.56525 -14.52310 -14.36823 -14.29668 -13.85932 -13.55062 -13.43307 -13.26339 -12.56532 -12.54274 -12.17032 -11.70324 -11.63248 -11.39844 -11.13688 -11.07491 -10.54107 -10.35480 -10.20250 -9.67393 -8.84754 -8.70482 -8.16105 -7.44403 -6.56831 -3.98885 0.86608 1.21541 1.35188 1.96583 2.66139 3.10450 3.18780 3.21062 3.34185 3.35325 3.63661 3.66626 3.85137 4.07404 4.44696 4.60056 4.74171 4.97066 5.08943 5.10591 5.32545 5.41921 5.57182 5.74880 5.85779 5.98471 6.03213 6.14609 6.44767 7.16019 7.41226 7.78476 7.89293 8.39208 8.99570 9.32383 9.80549 10.59876 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.011266 B = 0.003068 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.849496 B = 9124.811528 C =11429.864147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.028 3.972 3 Si 0.933 3.067 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.427 3.573 11 O -0.592 6.592 12 C 0.108 3.892 13 N -0.710 5.710 14 C 0.249 3.751 15 C -0.171 4.171 16 C 0.006 3.994 17 Cl -0.067 7.067 18 C -0.144 4.144 19 C -0.126 4.126 20 C 0.022 3.978 21 O -0.306 6.306 22 C 0.605 3.395 23 F -0.167 7.167 24 F -0.132 7.132 25 F -0.167 7.167 26 H 0.275 0.725 27 H 0.395 0.605 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.420 0.580 31 H 0.148 0.852 32 H 0.137 0.863 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.132 -20.572 -0.010 20.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.175 4.175 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.212 3.788 11 O -0.478 6.478 12 C -0.020 4.020 13 N -0.340 5.340 14 C 0.140 3.860 15 C -0.196 4.196 16 C -0.022 4.022 17 Cl -0.038 7.038 18 C -0.165 4.165 19 C -0.146 4.146 20 C -0.024 4.024 21 O -0.226 6.226 22 C 0.514 3.486 23 F -0.149 7.149 24 F -0.113 7.113 25 F -0.149 7.149 26 H 0.085 0.915 27 H 0.229 0.771 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.260 0.740 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.638 -20.051 -0.010 20.061 hybrid contribution 0.173 0.614 0.000 0.638 sum 0.810 -19.437 -0.010 19.454 Atomic orbital electron populations 1.69593 1.06010 1.28706 1.49192 1.25308 0.95665 0.99924 0.96648 0.85873 0.78810 0.80093 0.79229 1.19733 1.20806 1.19739 1.19685 0.93474 0.81974 1.48426 0.87723 1.41774 1.09393 1.04439 1.62674 1.19628 0.88340 0.84827 0.85957 1.90527 1.13688 1.86629 1.56992 1.21073 0.92070 0.86460 1.02395 1.44563 1.10559 1.00317 1.78606 1.16892 0.90367 0.83547 0.95197 1.20385 0.92791 0.96322 1.10062 1.20563 0.84922 0.93915 1.02781 1.98373 1.12751 1.95858 1.96808 1.20470 0.91008 0.98707 1.06319 1.21135 0.97059 0.93927 1.02446 1.18063 0.78908 0.93692 1.11781 1.86401 1.16171 1.30130 1.89874 1.19318 0.78104 0.76529 0.74621 1.93290 1.94043 1.75766 1.51833 1.93313 1.31578 1.90126 1.96292 1.93289 1.94194 1.76078 1.51378 0.91491 0.77096 0.90109 0.90113 0.73973 0.83432 0.84508 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.26 13.05 55.50 0.72 -22.53 16 2 C 0.03 0.71 5.50 -17.47 -0.10 0.61 16 3 Si 0.93 20.25 29.55 -169.99 -5.02 15.23 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 7 C -0.31 -8.17 9.68 -14.94 -0.14 -8.31 16 8 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 9 N -0.55 -13.07 5.29 -10.97 -0.06 -13.13 16 10 C 0.43 9.45 7.85 -10.99 -0.09 9.36 16 11 O -0.59 -15.18 15.24 5.55 0.08 -15.10 16 12 C 0.11 1.76 5.40 -5.20 -0.03 1.73 16 13 N -0.71 -11.38 5.70 -59.67 -0.34 -11.72 16 14 C 0.25 3.46 6.67 -83.57 -0.56 2.90 16 15 C -0.17 -2.10 9.09 -39.37 -0.36 -2.46 16 16 C 0.01 0.06 6.32 -39.51 -0.25 -0.19 16 17 Cl -0.07 -0.69 28.95 -51.86 -1.50 -2.19 16 18 C -0.14 -1.48 9.82 -39.52 -0.39 -1.87 16 19 C -0.13 -1.39 8.26 -39.47 -0.33 -1.72 16 20 C 0.02 0.29 6.50 -39.09 -0.25 0.04 16 21 O -0.31 -4.13 9.62 -19.83 -0.19 -4.32 16 22 C 0.61 6.80 3.42 101.05 0.35 7.15 16 23 F -0.17 -1.76 15.55 2.25 0.04 -1.72 16 24 F -0.13 -1.50 17.53 2.25 0.04 -1.46 16 25 F -0.17 -1.76 15.58 2.25 0.04 -1.72 16 26 H 0.28 6.78 8.31 -40.82 -0.34 6.45 16 27 H 0.40 8.89 7.90 -40.82 -0.32 8.57 16 28 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 29 H 0.08 1.16 7.96 -51.92 -0.41 0.75 16 30 H 0.42 7.51 6.80 -40.82 -0.28 7.24 16 31 H 0.15 1.67 6.74 -52.49 -0.35 1.31 16 32 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.31 5.09 -52.49 -0.27 1.04 16 LS Contribution 321.86 15.07 4.85 4.85 Total: -1.00 -28.31 321.86 -5.47 -33.78 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -1.98 Total: 12.78 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -2.14 Total: 7.25 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.33 Total: -47.38 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.11 Total: -19.42 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.11 Total: -4.90 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.31 -5.47 -33.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336885054.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.356 kcal (2) G-P(sol) polarization free energy of solvation -28.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds