Wall clock time and date at job start Tue Mar 31 2020 20:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37099 * 120.00561 * 2 1 4 4 H 1.07999 * 119.99879 * 204.39088 * 3 2 1 5 5 C 1.38953 * 119.99454 * 24.39035 * 3 2 1 6 6 N 1.31405 * 120.00062 * 12.66334 * 5 3 2 7 7 Si 1.86801 * 119.99585 * 192.66449 * 5 3 2 8 8 H 1.48500 * 109.47471 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47457 * 119.99932 * 7 5 3 10 10 H 1.48503 * 109.46916 * 240.00330 * 7 5 3 11 11 C 1.34784 * 120.00148 * 179.97438 * 2 1 3 12 12 O 1.21286 * 120.00173 * 180.02562 * 11 2 1 13 13 C 1.50705 * 119.99266 * 359.97438 * 11 2 1 14 14 N 1.46503 * 109.46695 * 179.97438 * 13 11 2 15 15 S 1.65605 * 119.99686 * 165.00089 * 14 13 11 16 16 O 1.42106 * 106.40381 * 311.46187 * 15 14 13 17 17 O 1.42103 * 106.39945 * 178.54515 * 15 14 13 18 18 C 1.76191 * 107.21798 * 65.00402 * 15 14 13 19 19 C 1.33353 * 125.19184 * 89.99930 * 18 15 14 20 20 C 1.38473 * 114.93435 * 179.97438 * 19 18 15 21 21 C 1.33499 * 114.88193 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 125.21142 * 179.97438 * 21 20 19 23 23 S 1.75878 * 125.19104 * 269.99959 * 18 15 14 24 24 H 1.08995 * 109.47032 * 265.87186 * 1 2 3 25 25 H 1.09003 * 109.46405 * 25.86955 * 1 2 3 26 26 H 1.08998 * 109.46903 * 145.86441 * 1 2 3 27 27 H 0.97003 * 119.99467 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47130 * 60.00368 * 13 11 2 29 29 H 1.08994 * 109.47590 * 299.99706 * 13 11 2 30 30 H 0.97001 * 120.00276 * 345.00503 * 14 13 11 31 31 H 1.08003 * 122.53171 * 0.02562 * 19 18 15 32 32 H 1.07997 * 122.56062 * 179.72967 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1583 1.2289 -0.3862 5 6 1.5489 2.3369 0.4970 6 7 0.4349 2.2491 1.1884 7 14 2.3236 4.0073 0.1821 8 1 3.5645 3.8351 -0.6153 9 1 1.3683 4.8628 -0.5667 10 1 2.6543 4.6518 1.4784 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0010 13 6 1.3853 -2.4723 0.0017 14 7 2.3373 -3.5859 0.0014 15 16 1.8226 -5.1152 0.3737 16 8 1.0604 -5.0026 1.5678 17 8 2.9580 -5.9611 0.2534 18 6 0.6981 -5.6091 -0.8896 19 6 1.0350 -6.2424 -2.0138 20 6 -0.0219 -6.5302 -2.8609 21 6 -1.2177 -6.1292 -2.4233 22 17 -2.7183 -6.3506 -3.2676 23 16 -1.0400 -5.3419 -0.8606 24 1 -0.3633 -0.0740 1.0250 25 1 -0.3632 0.9247 -0.4484 26 1 -0.3633 -0.8506 -0.5767 27 1 0.0151 3.0517 1.5356 28 1 0.7583 -2.5306 -0.8880 29 1 0.7590 -2.5295 0.8919 30 1 3.2691 -3.4274 -0.2167 31 1 2.0550 -6.5113 -2.2456 32 1 0.1116 -7.0360 -3.8057 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337520069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:44 Heat of formation + Delta-G solvation = -88.179599 kcal Electronic energy + Delta-G solvation = -22212.503544 eV Core-core repulsion = 18452.769524 eV Total energy + Delta-G solvation = -3759.734020 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.47484 -39.21571 -38.41304 -37.77005 -37.11706 -36.90242 -35.56825 -33.65259 -30.83747 -29.05058 -27.68876 -25.83632 -25.58533 -21.81636 -21.13404 -20.43567 -19.89797 -18.99652 -18.72231 -17.58439 -17.49200 -17.11857 -16.64978 -16.40408 -16.20754 -15.94232 -15.31220 -15.02620 -14.63794 -14.42812 -14.09113 -13.96332 -13.55626 -13.38380 -13.33611 -13.27263 -13.16956 -13.07815 -13.02711 -12.92848 -12.64520 -12.33631 -12.22279 -12.09682 -11.89196 -11.00990 -10.79659 -10.42975 -10.25462 -9.77537 -9.68370 -8.34507 -5.99808 -0.97814 -0.71436 -0.18069 0.42790 0.94391 1.21753 1.37161 1.44096 1.57020 1.86645 1.95052 2.29159 2.54906 2.98923 3.08907 3.36055 3.77735 3.97870 4.17559 4.20860 4.35392 4.54546 4.55917 4.64391 4.72606 5.03779 5.05394 5.41089 5.46582 5.87260 6.10929 6.45618 7.14247 7.42948 7.95623 8.68494 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.003347 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.390146 B = 8364.068199 C = 9533.867084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.455 5.455 3 C -0.345 4.345 4 H 0.075 0.925 5 C 0.001 3.999 6 N -0.893 5.893 7 Si 0.988 3.012 8 H -0.273 1.273 9 H -0.265 1.265 10 H -0.279 1.279 11 C 0.434 3.566 12 O -0.622 6.622 13 C 0.112 3.888 14 N -1.098 6.098 15 S 2.742 3.258 16 O -0.976 6.976 17 O -0.967 6.967 18 C -0.806 4.806 19 C 0.027 3.973 20 C -0.144 4.144 21 C -0.116 4.116 22 Cl 0.010 6.990 23 S 0.259 5.741 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.274 0.726 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.427 0.573 31 H 0.184 0.816 32 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.424 -16.774 -9.632 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.174 5.174 3 C -0.473 4.473 4 H 0.092 0.908 5 C -0.202 4.202 6 N -0.531 5.531 7 Si 0.812 3.188 8 H -0.197 1.197 9 H -0.190 1.190 10 H -0.204 1.204 11 C 0.222 3.778 12 O -0.509 6.509 13 C -0.018 4.018 14 N -0.862 5.862 15 S 2.830 3.170 16 O -0.966 6.966 17 O -0.958 6.958 18 C -1.010 5.010 19 C -0.009 4.009 20 C -0.176 4.176 21 C -0.263 4.263 22 Cl 0.039 6.961 23 S 0.524 5.476 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.266 0.734 31 H 0.201 0.799 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.139 -16.454 -7.810 20.378 hybrid contribution 1.086 0.494 -1.582 1.982 sum -8.053 -15.959 -9.393 20.193 Atomic orbital electron populations 1.21610 0.79046 1.01551 1.01180 1.43797 1.06949 1.04446 1.62198 1.19666 1.00587 0.85833 1.41221 0.90755 1.26067 0.96969 1.02893 0.94228 1.70058 1.19588 1.30824 1.32621 0.84951 0.78405 0.77326 0.78104 1.19745 1.18980 1.20448 1.20633 0.88082 0.85978 0.83124 1.90470 1.15618 1.87337 1.57456 1.21066 0.91171 0.84535 1.05005 1.55126 1.20045 1.22563 1.88437 1.00314 0.72518 0.71353 0.72858 1.93579 1.73112 1.86254 1.43625 1.93572 1.49746 1.65369 1.87083 1.35742 1.14814 1.26365 1.24061 1.20238 1.02558 0.89469 0.88605 1.20721 0.89154 1.04008 1.03759 1.26159 0.93370 1.06979 0.99771 1.98414 1.27468 1.95308 1.74936 1.84584 0.96588 1.53945 1.12531 0.93414 0.91922 0.90638 0.91597 0.86631 0.87440 0.73433 0.79865 0.79439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.43 8.44 127.77 1.08 5.51 16 2 N -0.46 -22.28 3.01 -658.88 -1.98 -24.27 16 3 C -0.34 -18.90 9.24 84.04 0.78 -18.12 16 4 H 0.07 4.35 7.45 -2.91 -0.02 4.33 16 5 C 0.00 0.05 5.04 84.93 0.43 0.47 16 6 N -0.89 -45.76 10.83 21.66 0.23 -45.53 16 7 Si 0.99 41.20 29.57 68.60 2.03 43.23 16 8 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 9 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 10 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 11 C 0.43 19.95 7.70 87.66 0.67 20.63 16 12 O -0.62 -33.04 15.44 -3.05 -0.05 -33.09 16 13 C 0.11 3.68 5.31 85.63 0.45 4.14 16 14 N -1.10 -33.47 5.93 -190.78 -1.13 -34.60 16 15 S 2.74 75.48 5.88 -56.49 -0.33 75.15 16 16 O -0.98 -31.91 17.38 -128.00 -2.22 -34.13 16 17 O -0.97 -29.62 17.80 -128.00 -2.28 -31.90 16 18 C -0.81 -17.25 6.54 66.71 0.44 -16.81 16 19 C 0.03 0.45 9.84 21.22 0.21 0.65 16 20 C -0.14 -2.02 10.13 21.25 0.22 -1.80 16 21 C -0.12 -1.90 7.10 66.75 0.47 -1.43 16 22 Cl 0.01 0.14 29.29 -2.72 -0.08 0.06 16 23 S 0.26 5.09 23.22 -56.49 -1.31 3.78 16 24 H 0.05 2.01 7.83 -2.39 -0.02 1.99 16 25 H 0.06 2.72 6.80 -2.39 -0.02 2.71 16 26 H 0.08 2.28 6.61 -2.39 -0.02 2.26 16 27 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 28 H 0.12 2.92 7.41 -2.39 -0.02 2.91 16 29 H 0.11 3.35 7.72 -2.39 -0.02 3.33 16 30 H 0.43 13.68 7.70 -96.74 -0.75 12.93 16 31 H 0.18 2.29 8.05 -2.91 -0.02 2.27 16 32 H 0.19 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -70.76 324.95 -1.93 -72.69 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.45 Total: 15.36 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 4.75 Total: -6.76 kcal Atomic # 7 Polarization: -101.52 SS G_CDS: -2.88 Total: -104.40 kcal Atomic # 8 Polarization: -94.57 SS G_CDS: -4.55 Total: -99.12 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 80.57 SS G_CDS: -1.64 Total: 78.93 kcal Atomic # 17 Polarization: 0.14 SS G_CDS: -0.08 Total: 0.06 kcal Total: -70.76 -1.93 -72.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337520069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.489 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds