Wall clock time and date at job start Tue Mar 31 2020 21:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37561 * 126.49653 * 2 1 4 4 C 1.34450 * 106.95407 * 180.14187 * 3 2 1 5 5 N 1.34289 * 108.33395 * 359.61348 * 4 3 2 6 6 C 1.31235 * 109.30334 * 0.24190 * 5 4 3 7 7 S 1.76204 * 125.79793 * 179.97438 * 6 5 4 8 8 C 1.76193 * 100.00121 * 0.02699 * 7 6 5 9 9 N 1.32673 * 119.53795 * 0.02562 * 8 7 6 10 10 C 1.31617 * 121.65279 * 179.97438 * 9 8 7 11 11 C 1.39695 * 120.53189 * 0.02562 * 10 9 8 12 12 C 1.47408 * 120.47699 * 179.97438 * 11 10 9 13 13 O 1.21635 * 120.00292 * 179.97438 * 12 11 10 14 14 N 1.34780 * 119.99918 * 0.02562 * 12 11 10 15 15 C 1.36905 * 119.99976 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00122 * 359.97438 * 15 14 12 17 17 C 1.39011 * 120.00013 * 179.97438 * 15 14 12 18 18 N 1.31381 * 120.00174 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99820 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47369 * 90.00176 * 19 17 15 21 21 H 1.48503 * 109.47238 * 210.00098 * 19 17 15 22 22 H 1.48499 * 109.47393 * 329.99714 * 19 17 15 23 23 C 1.40405 * 119.04721 * 359.97438 * 11 10 9 24 24 C 1.36941 * 118.47993 * 359.74631 * 23 11 10 25 25 Cl 1.73601 * 120.32252 * 180.26108 * 24 23 11 26 26 H 1.08997 * 109.47495 * 270.28024 * 1 2 3 27 27 H 1.08993 * 109.46786 * 30.28621 * 1 2 3 28 28 H 1.09000 * 109.46777 * 150.27894 * 1 2 3 29 29 H 1.07995 * 126.52309 * 0.02562 * 3 2 1 30 30 H 1.08002 * 125.83508 * 179.88521 * 4 3 2 31 31 H 1.08000 * 119.73032 * 179.97438 * 10 9 8 32 32 H 0.97003 * 120.00010 * 359.97438 * 14 12 11 33 33 H 0.97005 * 120.00524 * 179.97438 * 18 17 15 34 34 H 1.08003 * 120.76552 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2832 1.1058 0.0000 4 6 3.5503 0.6561 -0.0032 5 7 3.5220 -0.6865 0.0035 6 6 2.2745 -1.0941 0.0056 7 16 1.7388 -2.7727 0.0133 8 6 3.2987 -3.5918 0.0176 9 7 4.4144 -2.8739 0.0150 10 6 5.6015 -3.4423 0.0186 11 6 5.7219 -4.8341 0.0246 12 6 7.0520 -5.4694 0.0280 13 8 7.1468 -6.6821 0.0337 14 7 8.1632 -4.7067 0.0258 15 6 9.3985 -5.2968 0.0294 16 1 9.4827 -6.3734 0.0345 17 6 10.5446 -4.5101 0.0266 18 7 11.7301 -5.0763 0.0306 19 14 10.3991 -2.6478 0.0185 20 1 10.3599 -2.1482 1.4164 21 1 11.5697 -2.0628 -0.6835 22 1 9.1521 -2.2517 -0.6839 23 6 4.5578 -5.6190 0.0274 24 6 3.3434 -4.9861 0.0294 25 17 1.8736 -5.9098 0.0398 26 1 -0.3634 0.0050 1.0276 27 1 -0.3632 0.8874 -0.5182 28 1 -0.3633 -0.8925 -0.5095 29 1 1.9678 2.1387 0.0004 30 1 4.4390 1.2697 -0.0058 31 1 6.4896 -2.8278 0.0159 32 1 8.0876 -3.7396 0.0216 33 1 12.5299 -4.5274 0.0283 34 1 4.6185 -6.6973 0.0317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337538514.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:04 Heat of formation + Delta-G solvation = 84.751198 kcal Electronic energy + Delta-G solvation = -23216.583653 eV Core-core repulsion = 19497.030370 eV Total energy + Delta-G solvation = -3719.553284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.85974 -40.17996 -38.07846 -36.70032 -34.32123 -34.17335 -32.29679 -32.13324 -30.93880 -29.67374 -27.22850 -25.93964 -23.86662 -23.44004 -21.80044 -21.41120 -19.91082 -19.00264 -18.44524 -17.37413 -16.68343 -16.39039 -15.98557 -15.34063 -15.06508 -14.90537 -14.65084 -14.43781 -13.74289 -13.56855 -13.55399 -13.24049 -13.14492 -12.98056 -12.87494 -12.73867 -12.29067 -12.05323 -11.67094 -11.36793 -11.02664 -10.74372 -10.36272 -10.18629 -10.13318 -9.80884 -9.68426 -9.49680 -9.31302 -8.92532 -8.62921 -8.42275 -7.47040 -6.59307 -3.99166 0.57230 0.99172 1.23928 1.60786 1.76481 1.92712 2.67818 2.93291 2.97597 3.05657 3.08510 3.30751 3.90685 4.17604 4.31523 4.33809 4.49602 4.69084 4.71722 4.91612 4.97336 5.02084 5.09683 5.21232 5.35270 5.42006 5.48535 5.90156 5.98187 6.22615 6.42814 6.63895 6.73853 7.29365 7.77105 7.90156 7.91324 8.33070 8.68751 9.14264 9.60391 10.51076 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.003797 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.142084 B = 7371.974375 C = 9633.961133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.454 5.454 3 C -0.049 4.049 4 C -0.028 4.028 5 N -0.413 5.413 6 C 0.155 3.845 7 S 0.154 5.846 8 C 0.088 3.912 9 N -0.398 5.398 10 C 0.118 3.882 11 C -0.127 4.127 12 C 0.472 3.528 13 O -0.577 6.577 14 N -0.559 5.559 15 C -0.293 4.293 16 H 0.128 0.872 17 C 0.045 3.955 18 N -0.855 5.855 19 Si 0.877 3.123 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.264 1.264 23 C -0.020 4.020 24 C -0.066 4.066 25 Cl -0.051 7.051 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.176 0.824 30 H 0.171 0.829 31 H 0.163 0.837 32 H 0.373 0.627 33 H 0.280 0.720 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.344 12.497 -0.084 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.141 5.141 3 C -0.184 4.184 4 C -0.179 4.179 5 N -0.132 5.132 6 C -0.215 4.215 7 S 0.396 5.604 8 C -0.164 4.164 9 N -0.107 5.107 10 C -0.045 4.045 11 C -0.136 4.136 12 C 0.260 3.740 13 O -0.462 6.462 14 N -0.194 5.194 15 C -0.421 4.421 16 H 0.145 0.855 17 C -0.162 4.162 18 N -0.492 5.492 19 Si 0.702 3.298 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.189 1.189 23 C -0.048 4.048 24 C -0.101 4.101 25 Cl -0.022 7.022 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.193 0.807 30 H 0.189 0.811 31 H 0.180 0.820 32 H 0.207 0.793 33 H 0.091 0.909 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -23.863 11.636 -0.081 26.549 hybrid contribution 0.690 1.764 -0.023 1.894 sum -23.174 13.400 -0.104 26.769 Atomic orbital electron populations 1.22084 0.76574 1.04769 1.03833 1.45540 1.07105 1.05428 1.55994 1.22815 0.91355 0.92031 1.12151 1.22595 0.96393 0.91835 1.07080 1.71404 1.15609 1.10141 1.16056 1.25275 0.89130 0.94419 1.12681 1.83973 1.01265 0.86587 1.88587 1.22853 0.98703 0.90494 1.04334 1.68739 0.96549 1.35174 1.10271 1.23174 0.95492 0.91605 0.94266 1.21413 0.95806 0.94308 1.02043 1.17115 0.82566 0.87152 0.87143 1.90673 1.86038 1.12986 1.56549 1.42269 1.06442 1.07777 1.62942 1.19622 0.79805 0.96378 1.46344 0.85478 1.25167 0.94846 0.99316 0.96857 1.69602 0.97637 1.36696 1.45254 0.86683 0.79202 0.84310 0.79623 1.18870 1.19482 1.18873 1.21155 0.88440 1.01965 0.93255 1.21030 0.89213 0.90525 1.09374 1.98363 1.33945 1.72983 1.96929 0.90234 0.89232 0.89501 0.80677 0.81140 0.82044 0.79260 0.90889 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.40 11.00 59.85 0.66 1.06 16 2 N -0.45 -4.71 3.20 -124.36 -0.40 -5.11 16 3 C -0.05 -0.47 11.60 -16.32 -0.19 -0.66 16 4 C -0.03 -0.35 11.84 -17.82 -0.21 -0.56 16 5 N -0.41 -6.48 8.30 -13.46 -0.11 -6.59 16 6 C 0.15 2.12 7.93 -88.79 -0.70 1.42 16 7 S 0.15 1.93 20.72 -107.50 -2.23 -0.29 16 8 C 0.09 1.39 6.97 -16.72 -0.12 1.27 16 9 N -0.40 -6.90 7.09 -11.64 -0.08 -6.98 16 10 C 0.12 2.08 10.71 -17.10 -0.18 1.90 16 11 C -0.13 -2.41 5.89 -104.81 -0.62 -3.03 16 12 C 0.47 10.96 7.72 -12.53 -0.10 10.86 16 13 O -0.58 -15.44 15.98 5.25 0.08 -15.36 16 14 N -0.56 -13.14 5.04 -11.96 -0.06 -13.20 16 15 C -0.29 -7.94 10.16 -15.00 -0.15 -8.10 16 16 H 0.13 3.91 7.38 -52.49 -0.39 3.52 16 17 C 0.04 1.17 5.50 -17.46 -0.10 1.07 16 18 N -0.85 -23.58 13.95 55.50 0.77 -22.81 16 19 Si 0.88 18.48 27.74 -169.99 -4.71 13.77 16 20 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.26 -5.11 6.52 56.52 0.37 -4.74 16 23 C -0.02 -0.33 9.44 -39.24 -0.37 -0.71 16 24 C -0.07 -1.00 6.32 -39.58 -0.25 -1.25 16 25 Cl -0.05 -0.64 27.83 -51.86 -1.44 -2.08 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.09 0.45 7.73 -51.93 -0.40 0.05 16 29 H 0.18 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.16 2.65 6.41 -52.49 -0.34 2.32 16 32 H 0.37 7.74 3.81 -40.82 -0.16 7.59 16 33 H 0.28 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.16 2.67 7.73 -52.48 -0.41 2.26 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -33.15 329.42 -8.09 -41.23 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -2.55 Total: 9.19 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.33 Total: 3.27 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.12 Total: -54.69 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.08 Total: -15.36 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -4.71 Total: 13.77 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.23 Total: -0.29 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.44 Total: -2.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.15 -8.09 -41.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337538514.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.986 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds