Wall clock time and date at job start Tue Mar 31 2020 21:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.37561 * 126.49653 * 2 1 4 4 C 1.34450 * 106.95407 * 180.14187 * 3 2 1 5 5 N 1.34289 * 108.33395 * 359.61348 * 4 3 2 6 6 C 1.31235 * 109.30334 * 0.24190 * 5 4 3 7 7 S 1.76204 * 125.79793 * 179.97438 * 6 5 4 8 8 C 1.76193 * 100.00121 * 0.02699 * 7 6 5 9 9 N 1.32673 * 119.53795 * 0.02562 * 8 7 6 10 10 C 1.31617 * 121.65279 * 179.97438 * 9 8 7 11 11 C 1.39695 * 120.53189 * 0.02562 * 10 9 8 12 12 C 1.47408 * 120.47699 * 179.97438 * 11 10 9 13 13 O 1.21635 * 120.00292 * 179.97438 * 12 11 10 14 14 N 1.34780 * 119.99918 * 0.02562 * 12 11 10 15 15 C 1.36905 * 119.99976 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00122 * 359.97438 * 15 14 12 17 17 C 1.39011 * 120.00013 * 179.97438 * 15 14 12 18 18 N 1.31381 * 120.00174 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99820 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47369 * 90.00176 * 19 17 15 21 21 H 1.48503 * 109.47238 * 210.00098 * 19 17 15 22 22 H 1.48499 * 109.47393 * 329.99714 * 19 17 15 23 23 C 1.40405 * 119.04721 * 359.97438 * 11 10 9 24 24 C 1.36941 * 118.47993 * 359.74631 * 23 11 10 25 25 Cl 1.73601 * 120.32252 * 180.26108 * 24 23 11 26 26 H 1.08997 * 109.47495 * 270.28024 * 1 2 3 27 27 H 1.08993 * 109.46786 * 30.28621 * 1 2 3 28 28 H 1.09000 * 109.46777 * 150.27894 * 1 2 3 29 29 H 1.07995 * 126.52309 * 0.02562 * 3 2 1 30 30 H 1.08002 * 125.83508 * 179.88521 * 4 3 2 31 31 H 1.08000 * 119.73032 * 179.97438 * 10 9 8 32 32 H 0.97003 * 120.00010 * 359.97438 * 14 12 11 33 33 H 0.97005 * 120.00524 * 179.97438 * 18 17 15 34 34 H 1.08003 * 120.76552 * 179.97438 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2832 1.1058 0.0000 4 6 3.5503 0.6561 -0.0032 5 7 3.5220 -0.6865 0.0035 6 6 2.2745 -1.0941 0.0056 7 16 1.7388 -2.7727 0.0133 8 6 3.2987 -3.5918 0.0176 9 7 4.4144 -2.8739 0.0150 10 6 5.6015 -3.4423 0.0186 11 6 5.7219 -4.8341 0.0246 12 6 7.0520 -5.4694 0.0280 13 8 7.1468 -6.6821 0.0337 14 7 8.1632 -4.7067 0.0258 15 6 9.3985 -5.2968 0.0294 16 1 9.4827 -6.3734 0.0345 17 6 10.5446 -4.5101 0.0266 18 7 11.7301 -5.0763 0.0306 19 14 10.3991 -2.6478 0.0185 20 1 10.3599 -2.1482 1.4164 21 1 11.5697 -2.0628 -0.6835 22 1 9.1521 -2.2517 -0.6839 23 6 4.5578 -5.6190 0.0274 24 6 3.3434 -4.9861 0.0294 25 17 1.8736 -5.9098 0.0398 26 1 -0.3634 0.0050 1.0276 27 1 -0.3632 0.8874 -0.5182 28 1 -0.3633 -0.8925 -0.5095 29 1 1.9678 2.1387 0.0004 30 1 4.4390 1.2697 -0.0058 31 1 6.4896 -2.8278 0.0159 32 1 8.0876 -3.7396 0.0216 33 1 12.5299 -4.5274 0.0283 34 1 4.6185 -6.6973 0.0317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337538514.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:04 Heat of formation + Delta-G solvation = 63.149051 kcal Electronic energy + Delta-G solvation = -23217.520393 eV Core-core repulsion = 19497.030370 eV Total energy + Delta-G solvation = -3720.490023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.68354 -41.64788 -39.86562 -37.87137 -36.26467 -34.93171 -34.05287 -33.68385 -32.39658 -30.52478 -27.82033 -27.70653 -25.41023 -24.85386 -22.71959 -22.27059 -21.67432 -20.82134 -19.51350 -18.71289 -17.91055 -17.85443 -16.89145 -16.73641 -16.47833 -16.17669 -16.10906 -15.46788 -15.24343 -15.17257 -14.75007 -14.55043 -14.27374 -14.24818 -13.89203 -13.84259 -13.46295 -13.23254 -13.06994 -12.74909 -12.52016 -12.15222 -12.02218 -11.71320 -11.49738 -11.32041 -10.81019 -10.75755 -10.52234 -10.39847 -10.16590 -10.00123 -8.53984 -8.46499 -6.10224 -0.79771 -0.11560 -0.04480 0.52344 0.71794 0.94722 1.28119 1.31924 1.39919 1.74398 2.01543 2.14479 2.18556 2.53041 2.61081 3.13341 3.18392 3.56050 3.62850 3.82738 3.89447 3.94990 4.02085 4.37370 4.45170 4.52045 4.64530 4.71869 4.81557 5.01663 5.22557 5.41175 5.80516 5.81998 6.02238 6.40655 6.43170 6.69888 7.04512 7.18630 7.72025 8.61641 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.012293 B = 0.003797 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2277.142084 B = 7371.974375 C = 9633.961133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.449 5.449 3 C -0.021 4.021 4 C -0.064 4.064 5 N -0.455 5.455 6 C 0.115 3.885 7 S 0.210 5.790 8 C 0.091 3.909 9 N -0.409 5.409 10 C 0.133 3.867 11 C -0.151 4.151 12 C 0.484 3.516 13 O -0.618 6.618 14 N -0.561 5.561 15 C -0.328 4.328 16 H 0.069 0.931 17 C -0.001 4.001 18 N -0.911 5.911 19 Si 0.949 3.051 20 H -0.251 1.251 21 H -0.264 1.264 22 H -0.235 1.235 23 C -0.012 4.012 24 C -0.069 4.069 25 Cl -0.020 7.020 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.091 0.909 29 H 0.219 0.781 30 H 0.181 0.819 31 H 0.173 0.827 32 H 0.389 0.611 33 H 0.286 0.714 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.631 16.321 -0.138 32.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.135 5.135 3 C -0.157 4.157 4 C -0.215 4.215 5 N -0.175 5.175 6 C -0.255 4.255 7 S 0.452 5.548 8 C -0.161 4.161 9 N -0.120 5.120 10 C -0.030 4.030 11 C -0.160 4.160 12 C 0.273 3.727 13 O -0.505 6.505 14 N -0.199 5.199 15 C -0.457 4.457 16 H 0.087 0.913 17 C -0.203 4.203 18 N -0.549 5.549 19 Si 0.768 3.232 20 H -0.175 1.175 21 H -0.189 1.189 22 H -0.159 1.159 23 C -0.041 4.041 24 C -0.105 4.105 25 Cl 0.009 6.991 26 H 0.113 0.887 27 H 0.137 0.863 28 H 0.109 0.891 29 H 0.235 0.765 30 H 0.198 0.802 31 H 0.190 0.810 32 H 0.225 0.775 33 H 0.096 0.904 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -28.232 15.472 -0.136 32.194 hybrid contribution 1.518 0.607 -0.001 1.635 sum -26.714 16.079 -0.137 31.180 Atomic orbital electron populations 1.22475 0.73794 1.06506 1.05400 1.45833 1.08760 1.04562 1.54303 1.23463 0.90363 0.93483 1.08438 1.22965 0.98320 0.91169 1.09041 1.71244 1.17208 1.12079 1.16992 1.25357 0.89654 0.95453 1.15023 1.83671 0.97717 0.85951 1.87477 1.23601 1.00099 0.91284 1.01115 1.68958 0.96612 1.35151 1.11241 1.23314 0.96418 0.90791 0.92465 1.20991 0.93821 0.95179 1.05972 1.17797 0.83967 0.86679 0.84240 1.90638 1.87190 1.15226 1.57432 1.41968 1.05244 1.08396 1.64324 1.19119 0.82114 0.94242 1.50206 0.91307 1.26064 0.93642 1.05244 0.95339 1.69741 0.98699 1.39150 1.47336 0.85589 0.80529 0.76509 0.80566 1.17536 1.18875 1.15859 1.21206 0.88746 1.01964 0.92138 1.20977 0.89776 0.90809 1.08894 1.98375 1.31734 1.72277 1.96721 0.88722 0.86327 0.89070 0.76456 0.80152 0.80987 0.77457 0.90430 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.40 11.00 127.77 1.41 1.80 16 2 N -0.45 -7.52 3.20 -547.36 -1.75 -9.27 16 3 C -0.02 -0.33 11.60 82.93 0.96 0.63 16 4 C -0.06 -1.44 11.84 83.45 0.99 -0.45 16 5 N -0.45 -13.29 8.30 -196.50 -1.63 -14.92 16 6 C 0.11 2.80 7.93 179.71 1.42 4.23 16 7 S 0.21 4.62 20.72 -56.49 -1.17 3.45 16 8 C 0.09 2.66 6.97 84.87 0.59 3.25 16 9 N -0.41 -13.52 7.09 -190.74 -1.35 -14.87 16 10 C 0.13 4.54 10.71 85.08 0.91 5.45 16 11 C -0.15 -5.74 5.89 -19.98 -0.12 -5.86 16 12 C 0.48 23.36 7.72 86.66 0.67 24.03 16 13 O -0.62 -34.95 15.98 -4.14 -0.07 -35.02 16 14 N -0.56 -27.36 5.04 -310.00 -1.56 -28.92 16 15 C -0.33 -19.00 10.16 84.09 0.85 -18.15 16 16 H 0.07 4.68 7.38 -2.91 -0.02 4.66 16 17 C 0.00 -0.05 5.50 84.95 0.47 0.42 16 18 N -0.91 -53.12 13.95 21.67 0.30 -52.82 16 19 Si 0.95 38.20 27.74 68.60 1.90 40.10 16 20 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.24 -8.26 6.52 99.48 0.65 -7.61 16 23 C -0.01 -0.41 9.44 22.49 0.21 -0.19 16 24 C -0.07 -1.97 6.32 22.27 0.14 -1.83 16 25 Cl -0.02 -0.45 27.83 -2.72 -0.08 -0.53 16 26 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.09 0.55 7.73 -2.39 -0.02 0.54 16 29 H 0.22 1.29 8.06 -2.91 -0.02 1.27 16 30 H 0.18 3.35 8.06 -2.91 -0.02 3.32 16 31 H 0.17 5.40 6.41 -2.91 -0.02 5.38 16 32 H 0.39 16.09 3.81 -92.71 -0.35 15.74 16 33 H 0.29 15.11 8.31 -92.70 -0.77 14.34 16 34 H 0.16 5.33 7.73 -2.91 -0.02 5.30 16 Total: -1.00 -78.42 329.42 3.88 -74.54 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.77 Total: 24.93 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 8.51 Total: 13.34 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -5.99 Total: -120.81 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.07 Total: -35.02 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 1.90 Total: 40.10 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.17 Total: 3.45 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -78.42 3.88 -74.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337538514.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.688 kcal (2) G-P(sol) polarization free energy of solvation -78.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds