Wall clock time and date at job start Tue Mar 31 2020 20:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.33790 * 124.18121 * 269.69862 * 10 9 7 12 12 O 1.21534 * 123.77070 * 0.03808 * 11 10 9 13 13 N 1.34524 * 112.45943 * 179.86584 * 11 10 9 14 14 C 1.47314 * 106.62035 * 0.38034 * 13 11 10 15 15 H 1.09006 * 110.59494 * 118.30296 * 14 13 11 16 16 C 1.50698 * 110.60281 * 241.25120 * 14 13 11 17 17 C 1.38245 * 119.98411 * 33.89696 * 16 14 13 18 18 C 1.38220 * 120.00475 * 179.76834 * 17 16 14 19 19 C 1.38330 * 119.98996 * 0.50516 * 18 17 16 20 20 Br 1.89099 * 120.00759 * 179.76886 * 19 18 17 21 21 C 1.38319 * 119.98047 * 359.75187 * 19 18 17 22 22 C 1.38220 * 119.98893 * 359.97438 * 21 19 18 23 23 C 1.34769 * 124.17518 * 90.00311 * 10 9 7 24 24 O 1.21237 * 127.15914 * 359.92033 * 23 10 9 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 0.97002 * 126.69298 * 180.19226 * 13 11 10 29 29 H 1.07997 * 120.00016 * 0.02562 * 17 16 14 30 30 H 1.08003 * 120.00663 * 180.23830 * 18 17 16 31 31 H 1.07997 * 120.00968 * 180.02562 * 21 19 18 32 32 H 1.08003 * 119.99476 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6869 -4.1878 -1.1062 12 8 2.3865 -3.8444 -2.2327 13 7 3.5461 -5.1861 -0.8330 14 6 3.6283 -5.2814 0.6348 15 1 3.2832 -6.2576 0.9756 16 6 5.0362 -5.0214 1.1051 17 6 5.8344 -4.1173 0.4294 18 6 7.1242 -3.8749 0.8632 19 6 7.6197 -4.5448 1.9674 20 35 9.3863 -4.2183 2.5575 21 6 6.8224 -5.4532 2.6400 22 6 5.5308 -5.6908 2.2088 23 6 2.6948 -4.1881 1.1155 24 8 2.4436 -3.8924 2.2641 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 4.0174 -5.7378 -1.4768 29 1 5.4489 -3.5973 -0.4351 30 1 7.7465 -3.1657 0.3376 31 1 7.2086 -5.9761 3.5023 32 1 4.9083 -6.4004 2.7336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342100988.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:26 Heat of formation + Delta-G solvation = -12.024515 kcal Electronic energy + Delta-G solvation = -20818.303448 eV Core-core repulsion = 17405.080346 eV Total energy + Delta-G solvation = -3413.223102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.97467 -39.33996 -37.94585 -35.72630 -34.66389 -32.81479 -32.19490 -31.27882 -29.91609 -27.94962 -26.39326 -23.56770 -23.09271 -22.57499 -21.25561 -19.88994 -17.65942 -17.41711 -16.80450 -16.21262 -15.81378 -15.33444 -15.12553 -14.93321 -14.83780 -14.05061 -13.73387 -13.67145 -13.57451 -13.32595 -13.16366 -12.34926 -11.64524 -11.58681 -11.48633 -11.21506 -11.10632 -10.80782 -10.52204 -10.50223 -10.11304 -9.96923 -9.71443 -9.38676 -9.22447 -8.76789 -8.64274 -8.54985 -6.17751 -4.22997 0.75117 1.10669 1.39417 2.10354 2.83144 3.26494 3.33072 3.34182 3.37444 3.55480 3.66561 4.28427 4.36181 4.49745 4.57367 4.69582 4.91986 5.12457 5.18873 5.26890 5.41597 5.73841 5.76002 5.93206 5.99170 6.23619 6.49936 6.54886 6.96203 7.05579 7.16279 7.74904 7.85329 7.97096 7.99005 8.64028 8.80435 9.42184 10.91741 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.003699 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.460448 B = 7568.422769 C = 8753.620758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.060 0.940 9 C 0.248 3.752 10 N -0.555 5.555 11 C 0.699 3.301 12 O -0.535 6.535 13 N -0.734 5.734 14 C 0.131 3.869 15 H 0.130 0.870 16 C -0.076 4.076 17 C -0.086 4.086 18 C -0.088 4.088 19 C -0.084 4.084 20 Br -0.055 7.055 21 C -0.092 4.092 22 C -0.089 4.089 23 C 0.526 3.474 24 O -0.464 6.464 25 H 0.266 0.734 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.434 0.566 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.147 -14.514 4.630 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.131 3.869 10 N -0.298 5.298 11 C 0.401 3.599 12 O -0.408 6.408 13 N -0.400 5.400 14 C 0.021 3.979 15 H 0.147 0.853 16 C -0.078 4.078 17 C -0.106 4.106 18 C -0.108 4.108 19 C -0.164 4.164 20 Br 0.031 6.969 21 C -0.112 4.112 22 C -0.108 4.108 23 C 0.311 3.689 24 O -0.334 6.334 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.278 0.722 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.213 -13.781 4.872 22.582 hybrid contribution 0.278 0.662 -0.388 0.816 sum 17.490 -13.120 4.484 22.319 Atomic orbital electron populations 1.69925 1.06012 1.27378 1.49490 1.24885 0.94947 0.99350 0.94500 0.86352 0.79975 0.82853 0.77767 1.19676 1.20654 1.20675 1.21257 0.93396 0.90054 1.52528 0.92160 1.19647 0.86538 0.80660 1.00009 1.46833 1.43165 1.33804 1.06040 1.15996 0.79361 0.79488 0.85105 1.90977 1.62989 1.66105 1.20756 1.45595 1.49496 1.38667 1.06248 1.20895 0.93271 1.01322 0.82443 0.85274 1.19684 0.93800 0.97733 0.96574 1.21090 0.93098 0.96372 1.00006 1.21110 0.95917 0.98668 0.95127 1.21843 0.92405 1.02321 0.99807 1.96714 1.15109 1.95678 1.89406 1.21050 0.93585 0.97079 0.99469 1.20979 0.94927 0.99437 0.95483 1.20389 0.80473 0.82376 0.85700 1.90761 1.59712 1.64786 1.18130 0.92416 0.92907 0.92675 0.72249 0.84705 0.84673 0.84649 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.25 6.44 5.46 -5.19 -0.03 6.41 16 10 N -0.55 -11.80 2.59 -122.02 -0.32 -12.11 16 11 C 0.70 13.47 8.62 -88.02 -0.76 12.71 16 12 O -0.54 -12.29 17.48 5.34 0.09 -12.19 16 13 N -0.73 -9.69 5.33 -60.33 -0.32 -10.01 16 14 C 0.13 1.67 3.90 -69.35 -0.27 1.40 16 15 H 0.13 1.18 8.08 -51.93 -0.42 0.76 16 16 C -0.08 -0.92 5.08 -104.62 -0.53 -1.45 16 17 C -0.09 -1.11 9.35 -39.59 -0.37 -1.48 16 18 C -0.09 -1.04 9.79 -39.55 -0.39 -1.43 16 19 C -0.08 -0.93 6.22 -39.52 -0.25 -1.18 16 20 Br -0.05 -0.55 33.70 -68.01 -2.29 -2.84 16 21 C -0.09 -0.92 9.79 -39.56 -0.39 -1.31 16 22 C -0.09 -0.91 9.70 -39.59 -0.38 -1.29 16 23 C 0.53 9.82 7.63 -10.55 -0.08 9.74 16 24 O -0.46 -9.96 17.76 5.59 0.10 -9.86 16 25 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.05 1.43 8.01 -51.93 -0.42 1.02 16 27 H 0.06 1.52 7.85 -51.93 -0.41 1.11 16 28 H 0.43 4.30 8.96 -40.82 -0.37 3.93 16 29 H 0.14 1.88 7.57 -52.49 -0.40 1.49 16 30 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -33.00 312.14 -9.00 -42.00 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -2.82 Total: 0.26 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -3.86 Total: 8.55 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.10 Total: -47.34 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.19 Total: -22.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.84 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.00 -9.00 -42.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342100988.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.974 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds