Wall clock time and date at job start Tue Mar 31 2020 20:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.33790 * 124.18121 * 269.69862 * 10 9 7 12 12 O 1.21534 * 123.77070 * 0.03808 * 11 10 9 13 13 N 1.34524 * 112.45943 * 179.86584 * 11 10 9 14 14 C 1.47314 * 106.62035 * 0.38034 * 13 11 10 15 15 H 1.09006 * 110.59494 * 118.30296 * 14 13 11 16 16 C 1.50698 * 110.60281 * 241.25120 * 14 13 11 17 17 C 1.38245 * 119.98411 * 33.89696 * 16 14 13 18 18 C 1.38220 * 120.00475 * 179.76834 * 17 16 14 19 19 C 1.38330 * 119.98996 * 0.50516 * 18 17 16 20 20 Br 1.89099 * 120.00759 * 179.76886 * 19 18 17 21 21 C 1.38319 * 119.98047 * 359.75187 * 19 18 17 22 22 C 1.38220 * 119.98893 * 359.97438 * 21 19 18 23 23 C 1.34769 * 124.17518 * 90.00311 * 10 9 7 24 24 O 1.21237 * 127.15914 * 359.92033 * 23 10 9 25 25 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 27 27 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 28 28 H 0.97002 * 126.69298 * 180.19226 * 13 11 10 29 29 H 1.07997 * 120.00016 * 0.02562 * 17 16 14 30 30 H 1.08003 * 120.00663 * 180.23830 * 18 17 16 31 31 H 1.07997 * 120.00968 * 180.02562 * 21 19 18 32 32 H 1.08003 * 119.99476 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6869 -4.1878 -1.1062 12 8 2.3865 -3.8444 -2.2327 13 7 3.5461 -5.1861 -0.8330 14 6 3.6283 -5.2814 0.6348 15 1 3.2832 -6.2576 0.9756 16 6 5.0362 -5.0214 1.1051 17 6 5.8344 -4.1173 0.4294 18 6 7.1242 -3.8749 0.8632 19 6 7.6197 -4.5448 1.9674 20 35 9.3863 -4.2183 2.5575 21 6 6.8224 -5.4532 2.6400 22 6 5.5308 -5.6908 2.2088 23 6 2.6948 -4.1881 1.1155 24 8 2.4436 -3.8924 2.2641 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5567 0.8903 27 1 0.6246 -2.5571 -0.8897 28 1 4.0174 -5.7378 -1.4768 29 1 5.4489 -3.5973 -0.4351 30 1 7.7465 -3.1657 0.3376 31 1 7.2086 -5.9761 3.5023 32 1 4.9083 -6.4004 2.7336 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342100988.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:25 Heat of formation + Delta-G solvation = -33.959867 kcal Electronic energy + Delta-G solvation = -20819.254636 eV Core-core repulsion = 17405.080346 eV Total energy + Delta-G solvation = -3414.174290 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.42251 -40.30184 -39.51181 -37.20202 -36.36697 -34.62244 -33.35494 -32.13255 -30.86371 -29.89479 -27.62318 -25.53648 -24.12275 -23.78480 -22.36928 -21.43069 -19.09937 -18.98127 -18.27616 -17.73250 -17.06892 -16.80174 -16.56148 -16.24019 -16.10491 -15.76658 -15.16649 -14.76899 -14.69819 -14.49487 -14.25660 -14.10253 -13.69591 -13.17714 -12.73217 -12.54175 -12.48978 -12.32075 -12.10924 -11.97313 -11.72769 -11.30321 -11.21849 -10.72709 -10.72001 -10.43904 -10.07139 -9.68759 -8.34156 -6.48200 -0.16305 0.25953 0.55862 0.64506 1.34257 1.36158 1.41021 1.50464 2.07252 2.20920 2.34218 2.48388 2.98963 3.12389 3.36504 3.67672 3.87277 4.01426 4.26037 4.34883 4.41570 4.59822 4.66122 4.91548 4.97039 5.03343 5.08525 5.13841 5.34531 5.56093 5.70133 5.83184 5.85937 6.28894 6.45187 6.58384 7.14597 7.26064 8.75926 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.013760 B = 0.003699 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.460448 B = 7568.422769 C = 8753.620758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.016 3.984 3 Si 0.969 3.031 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.553 4.553 8 H 0.053 0.947 9 C 0.264 3.736 10 N -0.571 5.571 11 C 0.698 3.302 12 O -0.581 6.581 13 N -0.700 5.700 14 C 0.153 3.847 15 H 0.184 0.816 16 C -0.089 4.089 17 C -0.103 4.103 18 C -0.099 4.099 19 C -0.090 4.090 20 Br -0.045 7.045 21 C -0.090 4.090 22 C -0.078 4.078 23 C 0.517 3.483 24 O -0.497 6.497 25 H 0.272 0.728 26 H 0.032 0.968 27 H 0.028 0.972 28 H 0.454 0.546 29 H 0.116 0.884 30 H 0.139 0.861 31 H 0.162 0.838 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.177 -15.905 5.776 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.184 4.184 3 Si 0.793 3.207 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.591 4.591 8 H 0.071 0.929 9 C 0.144 3.856 10 N -0.315 5.315 11 C 0.399 3.601 12 O -0.457 6.457 13 N -0.366 5.366 14 C 0.045 3.955 15 H 0.201 0.799 16 C -0.091 4.091 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.170 4.170 20 Br 0.040 6.960 21 C -0.109 4.109 22 C -0.097 4.097 23 C 0.305 3.695 24 O -0.369 6.369 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.302 0.698 29 H 0.134 0.866 30 H 0.157 0.843 31 H 0.179 0.821 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 19.298 -15.242 6.024 25.318 hybrid contribution -0.296 1.053 -0.683 1.289 sum 19.002 -14.190 5.341 24.310 Atomic orbital electron populations 1.70023 1.07430 1.28614 1.49853 1.25794 0.95876 1.02960 0.93809 0.85341 0.78663 0.78379 0.78332 1.19280 1.19680 1.19584 1.21499 0.93194 0.91436 1.52968 0.92880 1.19031 0.87014 0.81979 0.97551 1.46737 1.43211 1.33457 1.08093 1.16058 0.79931 0.80254 0.83850 1.90941 1.64826 1.67744 1.22207 1.45338 1.47381 1.36596 1.07309 1.20998 0.92430 1.00970 0.81135 0.79900 1.19639 0.92912 0.98740 0.97827 1.21036 0.93975 0.97087 1.00126 1.21181 0.95712 0.99205 0.95777 1.22043 0.93082 1.02287 0.99549 1.96730 1.14405 1.95692 1.89161 1.21411 0.93340 0.96399 0.99772 1.21328 0.95216 0.98964 0.94186 1.21335 0.80521 0.83055 0.84611 1.90732 1.60898 1.66092 1.19165 0.91915 0.95040 0.95401 0.69837 0.86645 0.84290 0.82070 0.81078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.99 13.29 21.45 0.28 -54.71 16 2 C 0.02 0.92 5.46 84.66 0.46 1.39 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.55 -32.15 9.39 25.60 0.24 -31.91 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 9 C 0.26 14.36 5.46 85.63 0.47 14.83 16 10 N -0.57 -24.92 2.59 -777.21 -2.01 -26.93 16 11 C 0.70 27.17 8.62 179.44 1.55 28.72 16 12 O -0.58 -27.49 17.48 -3.82 -0.07 -27.56 16 13 N -0.70 -17.29 5.33 -463.20 -2.47 -19.76 16 14 C 0.15 3.50 3.90 43.63 0.17 3.67 16 15 H 0.18 2.39 8.08 -2.38 -0.02 2.38 16 16 C -0.09 -1.93 5.08 -19.86 -0.10 -2.03 16 17 C -0.10 -2.54 9.35 22.27 0.21 -2.33 16 18 C -0.10 -2.21 9.79 22.29 0.22 -1.99 16 19 C -0.09 -1.78 6.22 22.31 0.14 -1.64 16 20 Br -0.05 -0.81 33.70 -20.37 -0.69 -1.50 16 21 C -0.09 -1.46 9.79 22.28 0.22 -1.24 16 22 C -0.08 -1.27 9.70 22.26 0.22 -1.05 16 23 C 0.52 19.08 7.63 87.94 0.67 19.75 16 24 O -0.50 -21.31 17.76 -2.90 -0.05 -21.36 16 25 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.03 1.82 8.01 -2.39 -0.02 1.80 16 27 H 0.03 1.64 7.85 -2.39 -0.02 1.62 16 28 H 0.45 7.90 8.96 -92.71 -0.83 7.06 16 29 H 0.12 3.25 7.57 -2.91 -0.02 3.23 16 30 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 31 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -75.07 312.14 1.83 -73.24 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.35 Total: 5.44 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 4.46 Total: 26.17 kcal Atomic # 7 Polarization: -97.20 SS G_CDS: -4.20 Total: -101.40 kcal Atomic # 8 Polarization: -48.80 SS G_CDS: -0.12 Total: -48.92 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -0.69 Total: -1.50 kcal Total: -75.07 1.83 -73.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342100988.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.276 kcal (2) G-P(sol) polarization free energy of solvation -75.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds