Wall clock time and date at job start Tue Mar 31 2020 21:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86806 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47169 * 240.00171 * 3 2 1 5 5 H 1.48506 * 109.46752 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47142 * 119.99874 * 3 2 1 7 7 C 1.38951 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00128 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00242 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99830 * 179.97438 * 10 9 7 13 13 S 1.81005 * 109.46956 * 179.97438 * 12 10 9 14 14 C 1.76204 * 99.99843 * 180.02562 * 13 12 10 15 15 N 1.31291 * 126.49788 * 0.02659 * 14 13 12 16 16 N 1.28517 * 109.91873 * 179.97438 * 15 14 13 17 17 C 1.30312 * 110.14399 * 359.74145 * 16 15 14 18 18 N 1.36800 * 126.49999 * 180.02562 * 14 13 12 19 19 C 1.40242 * 127.17673 * 359.97438 * 18 14 13 20 20 C 1.38840 * 120.06184 * 309.97800 * 19 18 14 21 21 C 1.38106 * 119.96223 * 180.02562 * 20 19 18 22 22 C 1.38276 * 120.08268 * 359.97316 * 21 20 19 23 23 C 1.38379 * 120.11119 * 359.77028 * 22 21 20 24 24 Cl 1.73599 * 119.98112 * 180.25312 * 23 22 21 25 25 C 1.38265 * 120.03699 * 0.51356 * 23 22 21 26 26 H 0.97004 * 120.00379 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99512 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47155 * 60.00121 * 12 10 9 29 29 H 1.08994 * 109.47135 * 300.00074 * 12 10 9 30 30 H 1.08002 * 126.35590 * 180.29102 * 17 16 15 31 31 H 1.08003 * 120.01824 * 0.02562 * 20 19 18 32 32 H 1.08006 * 119.96325 * 179.97438 * 21 20 19 33 33 H 1.07994 * 119.94891 * 180.02562 * 22 21 20 34 34 H 1.08002 * 120.04178 * 179.74588 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 16 2.4201 -6.2387 0.0028 14 6 1.3000 -7.5989 0.0026 15 7 -0.0111 -7.5308 0.0017 16 7 -0.5110 -8.7148 0.0013 17 6 0.4414 -9.6041 -0.0035 18 7 1.6316 -8.9261 0.0034 19 6 2.9212 -9.4774 0.0041 20 6 3.8644 -9.0414 -0.9168 21 6 5.1335 -9.5860 -0.9146 22 6 5.4662 -10.5647 0.0038 23 6 4.5303 -10.9979 0.9264 24 17 4.9536 -12.2221 2.0822 25 6 3.2565 -10.4601 0.9248 26 1 -0.4851 0.8400 0.0004 27 1 0.3534 -2.3907 0.0005 28 1 0.6175 -4.9213 -0.8880 29 1 0.6168 -4.9201 0.8919 30 1 0.3158 -10.6768 -0.0094 31 1 3.6058 -8.2767 -1.6343 32 1 5.8671 -9.2472 -1.6312 33 1 6.4594 -10.9889 0.0038 34 1 2.5247 -10.8010 1.6422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342123114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:38 Heat of formation + Delta-G solvation = 70.304252 kcal Electronic energy + Delta-G solvation = -22614.231845 eV Core-core repulsion = 18894.052095 eV Total energy + Delta-G solvation = -3720.179750 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.15986 -39.85998 -38.25312 -37.07810 -35.08138 -34.11872 -31.58445 -31.48141 -30.83719 -30.20213 -29.24937 -24.81736 -24.49794 -23.72729 -22.23847 -22.02862 -19.76489 -19.10033 -18.05810 -17.08484 -16.73774 -16.60427 -16.02761 -15.78197 -15.38831 -15.08245 -14.58595 -14.58249 -14.33647 -14.15963 -14.03732 -13.34181 -12.70973 -12.56461 -12.40916 -12.16075 -12.09898 -11.79374 -11.60234 -11.43331 -11.11455 -11.10744 -10.93886 -10.50952 -10.33656 -10.23169 -10.18953 -9.63990 -9.50242 -9.20368 -8.71026 -8.12994 -7.55307 -6.52776 -3.95072 0.31201 0.55397 1.06222 1.45002 1.60412 2.22206 2.36082 2.67270 2.94933 3.13062 3.21412 3.25376 3.68781 4.08656 4.16726 4.26262 4.43589 4.45504 4.67216 4.76215 4.79667 4.97938 5.12032 5.12699 5.24243 5.51132 5.58853 5.64484 5.73595 5.75576 5.79635 6.00404 6.08135 6.63233 7.44707 7.88634 8.41482 8.44822 9.02009 9.35481 9.83547 10.63901 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.002416 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.634290 B =11588.509910 C =12569.761493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.544 5.544 10 C 0.449 3.551 11 O -0.586 6.586 12 C -0.130 4.130 13 S 0.087 5.913 14 C 0.157 3.843 15 N -0.292 5.292 16 N -0.280 5.280 17 C 0.158 3.842 18 N -0.426 5.426 19 C 0.131 3.869 20 C -0.099 4.099 21 C -0.084 4.084 22 C -0.100 4.100 23 C -0.022 4.022 24 Cl -0.057 7.057 25 C -0.103 4.103 26 H 0.275 0.725 27 H 0.397 0.603 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.223 0.777 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.365 -23.959 -0.495 25.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.178 5.178 10 C 0.233 3.767 11 O -0.473 6.473 12 C -0.282 4.282 13 S 0.315 5.685 14 C -0.215 4.215 15 N -0.135 5.135 16 N -0.117 5.117 17 C -0.131 4.131 18 N -0.118 5.118 19 C 0.039 3.961 20 C -0.119 4.119 21 C -0.102 4.102 22 C -0.119 4.119 23 C -0.049 4.049 24 Cl -0.028 7.028 25 C -0.123 4.123 26 H 0.085 0.915 27 H 0.231 0.769 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.239 0.761 31 H 0.163 0.837 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.737 -23.224 -0.379 24.482 hybrid contribution -0.550 0.010 0.176 0.578 sum 7.186 -23.214 -0.202 24.302 Atomic orbital electron populations 1.69607 1.06029 1.28720 1.48967 1.25337 0.95675 0.99949 0.96669 0.85862 0.78786 0.80053 0.79218 1.19706 1.20826 1.19712 1.19702 0.93473 0.81818 1.48495 0.87599 1.41737 1.09515 1.04155 1.62433 1.18853 0.87799 0.83728 0.86281 1.90554 1.13189 1.86431 1.57102 1.23730 1.01356 0.95089 1.08050 1.86287 1.01981 0.88966 1.91238 1.27985 0.98163 0.89393 1.05993 1.74782 1.02727 1.15317 1.20653 1.73943 1.25847 0.95357 1.16521 1.26818 0.79489 1.01150 1.05622 1.43994 1.05971 1.05365 1.56504 1.17405 0.83410 0.97557 0.97701 1.21368 0.93129 1.00077 0.97340 1.21093 0.95770 0.95006 0.98372 1.21271 0.99599 0.97066 0.93979 1.20635 0.94407 0.95108 0.94762 1.98401 1.93228 1.52898 1.58244 1.20862 0.96123 0.97130 0.98185 0.91465 0.76941 0.87055 0.87081 0.76105 0.83696 0.83396 0.83913 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.82 13.05 55.50 0.72 -23.10 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.61 16 3 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.31 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.54 -13.53 5.29 -10.96 -0.06 -13.59 16 10 C 0.45 10.40 7.80 -10.99 -0.09 10.31 16 11 O -0.59 -15.26 15.44 5.55 0.09 -15.18 16 12 C -0.13 -2.38 5.72 36.01 0.21 -2.17 16 13 S 0.09 1.43 20.02 -107.50 -2.15 -0.72 16 14 C 0.16 2.42 7.91 -88.09 -0.70 1.72 16 15 N -0.29 -5.00 11.60 30.73 0.36 -4.64 16 16 N -0.28 -4.34 12.17 29.94 0.36 -3.97 16 17 C 0.16 1.82 12.54 -88.74 -1.11 0.71 16 18 N -0.43 -5.28 2.92 -61.86 -0.18 -5.46 16 19 C 0.13 1.33 5.92 -83.58 -0.50 0.84 16 20 C -0.10 -0.92 8.98 -39.41 -0.35 -1.27 16 21 C -0.08 -0.58 10.04 -39.62 -0.40 -0.97 16 22 C -0.10 -0.66 9.83 -39.52 -0.39 -1.05 16 23 C -0.02 -0.17 6.32 -39.52 -0.25 -0.42 16 24 Cl -0.06 -0.41 28.95 -51.86 -1.50 -1.92 16 25 C -0.10 -0.87 9.51 -39.37 -0.37 -1.25 16 26 H 0.28 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.40 9.49 7.90 -40.82 -0.32 9.17 16 28 H 0.11 1.91 8.14 -51.91 -0.42 1.48 16 29 H 0.11 1.93 8.14 -51.92 -0.42 1.51 16 30 H 0.22 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.15 1.40 7.65 -52.48 -0.40 1.00 16 32 H 0.15 0.67 8.06 -52.48 -0.42 0.24 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 LS Contribution 339.58 15.07 5.12 5.12 Total: -1.00 -32.31 339.58 -9.23 -41.54 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -2.77 Total: 7.82 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -4.19 Total: -1.36 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 1.21 Total: -50.76 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.09 Total: -15.18 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.15 Total: -0.72 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.31 -9.23 -41.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342123114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.843 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds