Wall clock time and date at job start Tue Mar 31 2020 21:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86806 * 120.00056 * 2 1 4 4 H 1.48500 * 109.47169 * 240.00171 * 3 2 1 5 5 H 1.48506 * 109.46752 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47142 * 119.99874 * 3 2 1 7 7 C 1.38951 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99927 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00228 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00128 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00242 * 359.97438 * 10 9 7 12 12 C 1.50709 * 119.99830 * 179.97438 * 10 9 7 13 13 S 1.81005 * 109.46956 * 179.97438 * 12 10 9 14 14 C 1.76204 * 99.99843 * 180.02562 * 13 12 10 15 15 N 1.31291 * 126.49788 * 0.02659 * 14 13 12 16 16 N 1.28517 * 109.91873 * 179.97438 * 15 14 13 17 17 C 1.30312 * 110.14399 * 359.74145 * 16 15 14 18 18 N 1.36800 * 126.49999 * 180.02562 * 14 13 12 19 19 C 1.40242 * 127.17673 * 359.97438 * 18 14 13 20 20 C 1.38840 * 120.06184 * 309.97800 * 19 18 14 21 21 C 1.38106 * 119.96223 * 180.02562 * 20 19 18 22 22 C 1.38276 * 120.08268 * 359.97316 * 21 20 19 23 23 C 1.38379 * 120.11119 * 359.77028 * 22 21 20 24 24 Cl 1.73599 * 119.98112 * 180.25312 * 23 22 21 25 25 C 1.38265 * 120.03699 * 0.51356 * 23 22 21 26 26 H 0.97004 * 120.00379 * 359.97438 * 1 2 3 27 27 H 0.96999 * 119.99512 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.47155 * 60.00121 * 12 10 9 29 29 H 1.08994 * 109.47135 * 300.00074 * 12 10 9 30 30 H 1.08002 * 126.35590 * 180.29102 * 17 16 15 31 31 H 1.08003 * 120.01824 * 0.02562 * 20 19 18 32 32 H 1.08006 * 119.96325 * 179.97438 * 21 20 19 33 33 H 1.07994 * 119.94891 * 180.02562 * 22 21 20 34 34 H 1.08002 * 120.04178 * 179.74588 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5578 0.0021 12 6 1.2438 -4.8629 0.0022 13 16 2.4201 -6.2387 0.0028 14 6 1.3000 -7.5989 0.0026 15 7 -0.0111 -7.5308 0.0017 16 7 -0.5110 -8.7148 0.0013 17 6 0.4414 -9.6041 -0.0035 18 7 1.6316 -8.9261 0.0034 19 6 2.9212 -9.4774 0.0041 20 6 3.8644 -9.0414 -0.9168 21 6 5.1335 -9.5860 -0.9146 22 6 5.4662 -10.5647 0.0038 23 6 4.5303 -10.9979 0.9264 24 17 4.9536 -12.2221 2.0822 25 6 3.2565 -10.4601 0.9248 26 1 -0.4851 0.8400 0.0004 27 1 0.3534 -2.3907 0.0005 28 1 0.6175 -4.9213 -0.8880 29 1 0.6168 -4.9201 0.8919 30 1 0.3158 -10.6768 -0.0094 31 1 3.6058 -8.2767 -1.6343 32 1 5.8671 -9.2472 -1.6312 33 1 6.4594 -10.9889 0.0038 34 1 2.5247 -10.8010 1.6422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342123114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:37 Heat of formation + Delta-G solvation = 52.673448 kcal Electronic energy + Delta-G solvation = -22614.996374 eV Core-core repulsion = 18894.052095 eV Total energy + Delta-G solvation = -3720.944279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.034 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.20161 -40.52568 -40.17232 -37.68075 -36.11451 -35.93634 -33.46048 -32.31681 -31.88535 -30.93575 -30.84076 -26.72565 -25.42816 -24.49214 -23.17843 -22.92723 -21.45532 -20.22116 -19.87980 -18.12613 -17.78088 -17.63237 -17.41283 -16.71853 -16.50482 -16.36444 -16.12095 -15.89932 -15.76530 -14.90170 -14.85187 -14.68350 -14.36934 -13.87986 -13.50555 -13.37716 -13.12506 -12.90721 -12.74752 -12.71793 -12.48015 -12.18811 -12.11035 -12.02928 -11.89906 -11.57610 -11.46389 -11.32734 -10.64957 -10.13327 -10.12596 -9.87950 -8.81598 -8.52006 -6.02757 -0.39735 -0.17305 -0.04227 0.55612 0.87333 0.92399 1.37430 1.42904 1.45214 1.54458 1.58609 1.86383 2.27506 2.32667 2.99427 3.13948 3.46651 3.60285 3.77150 3.86629 3.93278 4.03949 4.05889 4.12821 4.19440 4.31629 4.38387 4.57317 4.72057 4.94220 5.06171 5.14928 5.36967 5.40092 5.79340 5.87793 6.44134 7.00880 7.36351 7.39244 7.90353 8.64663 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.002416 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.634290 B =11588.509910 C =12569.761493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.555 5.555 10 C 0.453 3.547 11 O -0.616 6.616 12 C -0.123 4.123 13 S 0.092 5.908 14 C 0.145 3.855 15 N -0.321 5.321 16 N -0.321 5.321 17 C 0.184 3.816 18 N -0.419 5.419 19 C 0.106 3.894 20 C -0.112 4.112 21 C -0.079 4.079 22 C -0.090 4.090 23 C -0.027 4.027 24 Cl -0.052 7.052 25 C -0.100 4.100 26 H 0.281 0.719 27 H 0.399 0.601 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.270 0.730 31 H 0.135 0.865 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.515 -25.548 -0.497 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.190 5.190 10 C 0.239 3.761 11 O -0.504 6.504 12 C -0.275 4.275 13 S 0.319 5.681 14 C -0.229 4.229 15 N -0.164 5.164 16 N -0.157 5.157 17 C -0.104 4.104 18 N -0.110 5.110 19 C 0.015 3.985 20 C -0.132 4.132 21 C -0.097 4.097 22 C -0.109 4.109 23 C -0.055 4.055 24 Cl -0.023 7.023 25 C -0.120 4.120 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.286 0.714 31 H 0.153 0.847 32 H 0.191 0.809 33 H 0.186 0.814 34 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.879 -24.843 -0.380 26.385 hybrid contribution -0.834 0.273 0.180 0.895 sum 8.045 -24.570 -0.200 25.855 Atomic orbital electron populations 1.69677 1.07065 1.29797 1.48990 1.26158 0.96542 1.02727 0.95626 0.84919 0.77736 0.76085 0.79211 1.19314 1.19586 1.19420 1.19729 0.93025 0.83337 1.50609 0.89403 1.41802 1.09595 1.04390 1.63204 1.19516 0.87633 0.84794 0.84184 1.90525 1.14758 1.87291 1.57844 1.23488 1.01425 0.93536 1.09008 1.86149 1.01398 0.88533 1.92005 1.27656 0.97608 0.90315 1.07345 1.74691 1.03602 1.16706 1.21443 1.73875 1.27336 0.95503 1.18997 1.27712 0.78390 1.02504 1.01842 1.44087 1.07187 1.04280 1.55409 1.17595 0.82716 0.98911 0.99293 1.21459 0.94082 1.00297 0.97349 1.21385 0.95191 0.94467 0.98669 1.21609 1.00408 0.96103 0.92753 1.20757 0.94366 0.95234 0.95114 1.98408 1.93121 1.52660 1.58131 1.20917 0.96772 0.96535 0.97798 0.90988 0.76666 0.85960 0.86203 0.71443 0.84725 0.80898 0.81380 0.83117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.01 13.05 21.66 0.28 -48.73 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 41.84 29.55 68.60 2.03 43.87 16 4 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.34 -18.75 9.68 84.04 0.81 -17.94 16 8 H 0.09 5.10 7.16 -2.91 -0.02 5.08 16 9 N -0.55 -28.35 5.29 -306.99 -1.62 -29.98 16 10 C 0.45 21.46 7.80 87.66 0.68 22.14 16 11 O -0.62 -32.81 15.44 -3.06 -0.05 -32.86 16 12 C -0.12 -4.55 5.72 71.24 0.41 -4.15 16 13 S 0.09 3.02 20.02 -56.49 -1.13 1.89 16 14 C 0.15 4.44 7.91 179.46 1.42 5.86 16 15 N -0.32 -11.02 11.60 -56.68 -0.66 -11.68 16 16 N -0.32 -9.73 12.17 -59.17 -0.72 -10.45 16 17 C 0.18 3.93 12.54 179.69 2.25 6.18 16 18 N -0.42 -9.89 2.92 -349.63 -1.02 -10.92 16 19 C 0.11 1.99 5.92 38.07 0.23 2.22 16 20 C -0.11 -1.92 8.98 22.38 0.20 -1.72 16 21 C -0.08 -0.89 10.04 22.25 0.22 -0.67 16 22 C -0.09 -0.92 9.83 22.31 0.22 -0.70 16 23 C -0.03 -0.35 6.32 22.31 0.14 -0.21 16 24 Cl -0.05 -0.64 28.95 -2.72 -0.08 -0.72 16 25 C -0.10 -1.49 9.51 22.41 0.21 -1.28 16 26 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 28 H 0.12 4.26 8.14 -2.40 -0.02 4.24 16 29 H 0.12 4.23 8.14 -2.40 -0.02 4.21 16 30 H 0.27 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.13 2.56 7.65 -2.91 -0.02 2.54 16 32 H 0.17 1.04 8.06 -2.91 -0.02 1.02 16 33 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -70.80 339.58 4.74 -66.06 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.44 Total: 23.80 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 7.27 Total: 9.70 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -3.74 Total: -111.74 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.05 Total: -32.86 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -1.13 Total: 1.89 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -70.80 4.74 -66.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342123114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.734 kcal (2) G-P(sol) polarization free energy of solvation -70.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds