Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47359 * 270.00564 * 3 2 1 5 5 H 1.48504 * 109.46582 * 30.00430 * 3 2 1 6 6 H 1.48501 * 109.47209 * 150.00149 * 3 2 1 7 7 C 1.37877 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99989 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47245 * 59.99940 * 9 7 2 11 11 O 1.42896 * 109.47257 * 300.00250 * 9 7 2 12 12 C 1.53001 * 109.47302 * 180.02562 * 9 7 2 13 13 N 1.46501 * 109.47060 * 185.00044 * 12 9 7 14 14 N 1.28727 * 125.33984 * 270.02026 * 13 12 9 15 15 N 1.28993 * 108.94428 * 179.70404 * 14 13 12 16 16 C 1.34049 * 107.26389 * 0.43536 * 15 14 13 17 17 C 1.48456 * 126.66911 * 179.83222 * 16 15 14 18 18 C 1.39303 * 120.10985 * 359.68853 * 17 16 15 19 19 C 1.38009 * 119.89502 * 180.02562 * 18 17 16 20 20 C 1.38417 * 120.10525 * 0.02562 * 19 18 17 21 21 Br 1.89100 * 119.89098 * 179.97438 * 20 19 18 22 22 C 1.38410 * 120.21520 * 0.25605 * 20 19 18 23 23 C 1.38007 * 120.10353 * 359.44508 * 22 20 19 24 24 N 1.28872 * 125.34217 * 90.00152 * 13 12 9 25 25 H 0.96997 * 120.00010 * 359.97438 * 1 2 3 26 26 H 0.96704 * 113.99772 * 299.99902 * 11 9 7 27 27 H 1.08997 * 109.47333 * 64.99713 * 12 9 7 28 28 H 1.08998 * 109.47315 * 304.99905 * 12 9 7 29 29 H 1.07996 * 120.05622 * 0.04621 * 18 17 16 30 30 H 1.08001 * 119.95086 * 180.02562 * 19 18 17 31 31 H 1.08000 * 119.94456 * 179.72411 * 22 20 19 32 32 H 1.08004 * 120.05359 * 180.29861 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 8 0.4300 -2.5751 1.1665 12 6 2.2454 -3.6621 -0.0005 13 7 1.5169 -4.9274 -0.1209 14 7 1.0767 -5.6298 0.8639 15 7 0.4801 -6.6748 0.3994 16 6 0.5641 -6.6196 -0.9374 17 6 0.0228 -7.6103 -1.9014 18 6 -0.6477 -8.7406 -1.4395 19 6 -1.1486 -9.6590 -2.3396 20 6 -0.9854 -9.4586 -3.6994 21 35 -1.6736 -10.7213 -4.9273 22 6 -0.3149 -8.3401 -4.1631 23 6 0.1842 -7.4129 -3.2710 24 7 1.2158 -5.5117 -1.2294 25 1 -0.4850 0.8400 0.0004 26 1 0.9225 -2.5300 1.9975 27 1 2.8116 -3.6560 0.9308 28 1 2.9295 -3.5552 -0.8423 29 1 -0.7755 -8.8979 -0.3787 30 1 -1.6689 -10.5355 -1.9824 31 1 -0.1861 -8.1904 -5.2249 32 1 0.7031 -6.5380 -3.6339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352145440.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = 99.915188 kcal Electronic energy + Delta-G solvation = -19889.673991 eV Core-core repulsion = 16513.597710 eV Total energy + Delta-G solvation = -3376.076281 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.87282 -39.37476 -36.62334 -34.26850 -33.46700 -32.40097 -31.96184 -31.30902 -29.96855 -28.78088 -25.96594 -24.09301 -23.53496 -22.36953 -21.41315 -21.04282 -18.01783 -17.33430 -16.81387 -16.07608 -15.62128 -15.30726 -14.83412 -14.55011 -14.26081 -14.04343 -13.73628 -13.58275 -13.34920 -13.07280 -12.14418 -11.66708 -11.63627 -11.55344 -11.37670 -11.32273 -11.05498 -11.02969 -10.72313 -10.63146 -10.52661 -10.35074 -10.25412 -9.43338 -9.27269 -8.84250 -8.69090 -8.42354 -6.26592 -4.50004 0.52655 1.09651 1.35152 1.72931 2.41051 2.50910 3.14657 3.22710 3.23909 3.57126 3.87741 4.19397 4.38653 4.67104 4.72309 5.00167 5.09245 5.14158 5.37274 5.42828 5.54951 5.58829 5.75431 5.77817 5.95602 5.99765 6.13739 6.18889 6.30083 6.50481 6.60696 7.24671 7.53037 7.75108 8.51249 8.73175 9.06141 9.27956 10.77718 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.002192 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.791824 B =12773.542693 C =13341.969457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.084 3.916 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.581 4.581 8 H 0.064 0.936 9 C 0.224 3.776 10 H 0.069 0.931 11 O -0.557 6.557 12 C 0.089 3.911 13 N -0.103 5.103 14 N -0.050 5.050 15 N -0.289 5.289 16 C 0.178 3.822 17 C 0.022 3.978 18 C -0.078 4.078 19 C -0.093 4.093 20 C -0.083 4.083 21 Br -0.054 7.054 22 C -0.092 4.092 23 C -0.080 4.080 24 N -0.296 5.296 25 H 0.266 0.734 26 H 0.352 0.648 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.507 -19.873 -8.564 21.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.125 4.125 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.619 4.619 8 H 0.083 0.917 9 C 0.164 3.836 10 H 0.086 0.914 11 O -0.359 6.359 12 C -0.029 4.029 13 N -0.017 5.017 14 N -0.043 5.043 15 N -0.160 5.160 16 C -0.101 4.101 17 C 0.019 3.981 18 C -0.098 4.098 19 C -0.112 4.112 20 C -0.164 4.164 21 Br 0.032 6.968 22 C -0.112 4.112 23 C -0.101 4.101 24 N -0.147 5.147 25 H 0.075 0.925 26 H 0.197 0.803 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.235 -19.937 -8.831 21.841 hybrid contribution 0.996 1.239 0.170 1.598 sum -0.239 -18.699 -8.662 20.609 Atomic orbital electron populations 1.70073 1.06122 1.27190 1.45122 1.25024 0.94776 0.99487 0.93201 0.86497 0.79824 0.82655 0.78412 1.20283 1.20895 1.19554 1.21323 0.93301 0.90129 1.57180 0.91739 1.19815 0.88056 0.88119 0.87593 0.91369 1.86650 1.38039 1.95951 1.15291 1.23957 0.96706 0.76795 1.05492 1.50481 1.33087 1.18337 0.99751 1.78884 1.09418 0.99123 1.16830 1.75925 1.17887 1.14612 1.07540 1.23389 1.01592 0.94139 0.90967 1.17402 0.98150 0.92036 0.90550 1.21217 0.95617 0.92098 1.00915 1.21026 0.99636 0.99838 0.90732 1.21915 1.04027 0.96576 0.93837 1.96718 1.85380 1.55950 1.58786 1.21031 0.97091 0.92508 1.00545 1.21264 0.98279 0.99248 0.91265 1.74811 1.18356 1.08262 1.13317 0.92453 0.80349 0.87149 0.86769 0.83728 0.84373 0.84375 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.81 12.84 55.43 0.71 -23.10 16 2 C 0.08 2.16 5.40 -17.82 -0.10 2.07 16 3 Si 0.90 19.65 29.54 -169.99 -5.02 14.63 16 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.58 -14.27 8.76 -34.44 -0.30 -14.57 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.22 5.18 3.07 -27.88 -0.09 5.09 16 10 H 0.07 1.81 8.14 -51.93 -0.42 1.38 16 11 O -0.56 -13.54 12.68 -35.23 -0.45 -13.99 16 12 C 0.09 1.62 6.17 -4.04 -0.02 1.59 16 13 N -0.10 -1.98 3.94 -10.63 -0.04 -2.02 16 14 N -0.05 -0.99 13.23 60.35 0.80 -0.19 16 15 N -0.29 -5.43 12.23 32.15 0.39 -5.03 16 16 C 0.18 3.12 7.94 -156.31 -1.24 1.88 16 17 C 0.02 0.31 5.88 -104.89 -0.62 -0.31 16 18 C -0.08 -0.92 9.70 -39.27 -0.38 -1.30 16 19 C -0.09 -0.93 9.77 -39.60 -0.39 -1.32 16 20 C -0.08 -0.85 6.23 -39.45 -0.25 -1.10 16 21 Br -0.05 -0.48 33.69 -68.01 -2.29 -2.77 16 22 C -0.09 -0.95 9.77 -39.60 -0.39 -1.34 16 23 C -0.08 -0.97 9.70 -39.27 -0.38 -1.35 16 24 N -0.30 -5.52 11.85 32.17 0.38 -5.13 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.35 7.41 9.04 45.56 0.41 7.82 16 27 H 0.11 1.76 8.14 -51.93 -0.42 1.33 16 28 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 29 H 0.14 1.62 7.89 -52.49 -0.41 1.21 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.14 1.70 7.88 -52.48 -0.41 1.29 16 LS Contribution 315.10 15.07 4.75 4.75 Total: -1.00 -29.69 315.10 -6.98 -36.68 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -2.07 Total: 6.84 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -4.15 Total: -10.65 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 2.24 Total: -35.48 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -0.45 Total: -13.99 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.69 -6.98 -36.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352145440.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.591 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds