Wall clock time and date at job start Tue Mar 31 2020 20:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00045 * 2 1 4 4 H 1.48498 * 109.47359 * 270.00564 * 3 2 1 5 5 H 1.48504 * 109.46582 * 30.00430 * 3 2 1 6 6 H 1.48501 * 109.47209 * 150.00149 * 3 2 1 7 7 C 1.37877 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00225 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99989 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47245 * 59.99940 * 9 7 2 11 11 O 1.42896 * 109.47257 * 300.00250 * 9 7 2 12 12 C 1.53001 * 109.47302 * 180.02562 * 9 7 2 13 13 N 1.46501 * 109.47060 * 185.00044 * 12 9 7 14 14 N 1.28727 * 125.33984 * 270.02026 * 13 12 9 15 15 N 1.28993 * 108.94428 * 179.70404 * 14 13 12 16 16 C 1.34049 * 107.26389 * 0.43536 * 15 14 13 17 17 C 1.48456 * 126.66911 * 179.83222 * 16 15 14 18 18 C 1.39303 * 120.10985 * 359.68853 * 17 16 15 19 19 C 1.38009 * 119.89502 * 180.02562 * 18 17 16 20 20 C 1.38417 * 120.10525 * 0.02562 * 19 18 17 21 21 Br 1.89100 * 119.89098 * 179.97438 * 20 19 18 22 22 C 1.38410 * 120.21520 * 0.25605 * 20 19 18 23 23 C 1.38007 * 120.10353 * 359.44508 * 22 20 19 24 24 N 1.28872 * 125.34217 * 90.00152 * 13 12 9 25 25 H 0.96997 * 120.00010 * 359.97438 * 1 2 3 26 26 H 0.96704 * 113.99772 * 299.99902 * 11 9 7 27 27 H 1.08997 * 109.47333 * 64.99713 * 12 9 7 28 28 H 1.08998 * 109.47315 * 304.99905 * 12 9 7 29 29 H 1.07996 * 120.05622 * 0.04621 * 18 17 16 30 30 H 1.08001 * 119.95086 * 180.02562 * 19 18 17 31 31 H 1.08000 * 119.94456 * 179.72411 * 22 20 19 32 32 H 1.08004 * 120.05359 * 180.29861 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8903 11 8 0.4300 -2.5751 1.1665 12 6 2.2454 -3.6621 -0.0005 13 7 1.5169 -4.9274 -0.1209 14 7 1.0767 -5.6298 0.8639 15 7 0.4801 -6.6748 0.3994 16 6 0.5641 -6.6196 -0.9374 17 6 0.0228 -7.6103 -1.9014 18 6 -0.6477 -8.7406 -1.4395 19 6 -1.1486 -9.6590 -2.3396 20 6 -0.9854 -9.4586 -3.6994 21 35 -1.6736 -10.7213 -4.9273 22 6 -0.3149 -8.3401 -4.1631 23 6 0.1842 -7.4129 -3.2710 24 7 1.2158 -5.5117 -1.2294 25 1 -0.4850 0.8400 0.0004 26 1 0.9225 -2.5300 1.9975 27 1 2.8116 -3.6560 0.9308 28 1 2.9295 -3.5552 -0.8423 29 1 -0.7755 -8.8979 -0.3787 30 1 -1.6689 -10.5355 -1.9824 31 1 -0.1861 -8.1904 -5.2249 32 1 0.7031 -6.5380 -3.6339 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352145440.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:30 Heat of formation + Delta-G solvation = 80.039308 kcal Electronic energy + Delta-G solvation = -19890.535873 eV Core-core repulsion = 16513.597710 eV Total energy + Delta-G solvation = -3376.938163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.012 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.30063 -40.28429 -38.37555 -35.75696 -34.72629 -34.35407 -33.07096 -32.19602 -31.30836 -30.02351 -27.70779 -25.29939 -24.90645 -23.64264 -22.60386 -22.49445 -19.63134 -18.61965 -18.32058 -17.49385 -16.74914 -16.62077 -16.28515 -16.17900 -15.91774 -15.16292 -14.89278 -14.73715 -14.55755 -14.41052 -13.55667 -13.38869 -13.11679 -12.82615 -12.73390 -12.57570 -12.49218 -12.40824 -12.21470 -12.09476 -11.99311 -11.51302 -11.29472 -11.14330 -10.78663 -10.37972 -10.13277 -9.57266 -8.22246 -6.50845 -0.47875 0.23350 0.26587 0.53747 0.99827 1.26455 1.44008 1.45481 1.55568 2.36838 2.59466 2.66367 3.06393 3.16683 3.74230 3.85994 3.90377 4.00090 4.07404 4.19480 4.32488 4.38638 4.49032 4.55508 4.69543 4.91958 5.02890 5.08684 5.18618 5.34558 5.37114 5.59849 5.62191 5.83988 6.60389 7.23499 7.28959 7.38596 8.83240 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.028083 B = 0.002192 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.791824 B =12773.542693 C =13341.969457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.027 3.973 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.226 3.774 10 H 0.024 0.976 11 O -0.578 6.578 12 C 0.101 3.899 13 N -0.110 5.110 14 N -0.065 5.065 15 N -0.301 5.301 16 C 0.186 3.814 17 C -0.009 4.009 18 C -0.077 4.077 19 C -0.086 4.086 20 C -0.083 4.083 21 Br -0.036 7.036 22 C -0.088 4.088 23 C -0.082 4.082 24 N -0.312 5.312 25 H 0.263 0.737 26 H 0.365 0.635 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 -21.002 -9.349 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.620 4.620 8 H 0.102 0.898 9 C 0.166 3.834 10 H 0.042 0.958 11 O -0.383 6.383 12 C -0.017 4.017 13 N -0.023 5.023 14 N -0.057 5.057 15 N -0.171 5.171 16 C -0.094 4.094 17 C -0.012 4.012 18 C -0.098 4.098 19 C -0.105 4.105 20 C -0.163 4.163 21 Br 0.050 6.950 22 C -0.107 4.107 23 C -0.104 4.104 24 N -0.164 5.164 25 H 0.072 0.928 26 H 0.211 0.789 27 H 0.155 0.845 28 H 0.152 0.848 29 H 0.165 0.835 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.277 -21.083 -9.616 23.174 hybrid contribution 0.623 1.421 0.326 1.586 sum 0.346 -19.662 -9.290 21.749 Atomic orbital electron populations 1.70233 1.08075 1.27821 1.47503 1.25949 0.95401 1.03342 0.92938 0.85406 0.78826 0.78047 0.78401 1.19971 1.21535 1.17879 1.21777 0.94292 0.90610 1.55349 0.89818 1.19549 0.87956 0.90119 0.85761 0.95818 1.86590 1.39271 1.96186 1.16252 1.23740 0.95244 0.74913 1.07841 1.50472 1.33478 1.18543 0.99818 1.78827 1.09901 0.99632 1.17331 1.75888 1.18295 1.14614 1.08338 1.24026 1.00238 0.94064 0.91056 1.17574 1.00386 0.92578 0.90696 1.21296 0.95289 0.91739 1.01489 1.21274 0.98854 0.99976 0.90439 1.22139 1.03138 0.96663 0.94369 1.96751 1.85043 1.55109 1.58095 1.21243 0.96261 0.91909 1.01321 1.21298 0.98488 0.99722 0.90842 1.74803 1.19314 1.08945 1.13313 0.92805 0.78908 0.84506 0.84788 0.83507 0.81872 0.82211 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.58 12.84 21.45 0.28 -51.30 16 2 C 0.03 1.41 5.40 84.65 0.46 1.86 16 3 Si 0.97 40.08 29.54 68.60 2.03 42.11 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 7 C -0.58 -28.30 8.76 25.60 0.22 -28.07 16 8 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 9 C 0.23 10.57 3.07 29.85 0.09 10.66 16 10 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 11 O -0.58 -28.68 12.68 -148.98 -1.89 -30.57 16 12 C 0.10 3.59 6.17 86.38 0.53 4.13 16 13 N -0.11 -4.21 3.94 -187.55 -0.74 -4.95 16 14 N -0.06 -2.55 13.23 37.02 0.49 -2.06 16 15 N -0.30 -11.39 12.23 -52.19 -0.64 -12.03 16 16 C 0.19 6.53 7.94 137.38 1.09 7.62 16 17 C -0.01 -0.24 5.88 -20.04 -0.12 -0.36 16 18 C -0.08 -1.75 9.70 22.47 0.22 -1.53 16 19 C -0.09 -1.54 9.77 22.26 0.22 -1.32 16 20 C -0.08 -1.49 6.23 22.35 0.14 -1.36 16 21 Br -0.04 -0.55 33.69 -20.37 -0.69 -1.23 16 22 C -0.09 -1.65 9.77 22.26 0.22 -1.43 16 23 C -0.08 -1.95 9.70 22.47 0.22 -1.73 16 24 N -0.31 -11.77 11.85 -52.13 -0.62 -12.39 16 25 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 26 H 0.36 15.48 9.04 -74.05 -0.67 14.81 16 27 H 0.14 4.12 8.14 -2.39 -0.02 4.10 16 28 H 0.13 4.20 8.14 -2.39 -0.02 4.18 16 29 H 0.15 3.20 7.89 -2.91 -0.02 3.17 16 30 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.14 3.33 7.88 -2.91 -0.02 3.31 16 Total: -1.00 -64.54 315.10 2.02 -62.52 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.51 Total: 21.43 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 3.29 Total: -11.53 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -1.23 Total: -82.73 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -1.89 Total: -30.57 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -0.69 Total: -1.23 kcal Total: -64.54 2.02 -62.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352145440.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.563 kcal (2) G-P(sol) polarization free energy of solvation -64.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds