Wall clock time and date at job start Tue Mar 31 2020 20:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48504 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47215 * 300.00135 * 3 2 1 6 6 H 1.48499 * 109.47215 * 60.00109 * 3 2 1 7 7 C 1.38943 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99956 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00270 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99869 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00219 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47212 * 180.02562 * 12 10 9 14 14 S 1.65602 * 119.99612 * 164.72359 * 13 12 10 15 15 O 1.42104 * 106.40175 * 178.81816 * 14 13 12 16 16 O 1.42095 * 106.40656 * 311.73868 * 14 13 12 17 17 C 1.76203 * 107.21635 * 65.28001 * 14 13 12 18 18 C 1.38246 * 119.97456 * 114.71905 * 17 14 13 19 19 C 1.38362 * 120.02173 * 179.76396 * 18 17 14 20 20 F 1.35098 * 120.01422 * 180.25578 * 19 18 17 21 21 C 1.38688 * 119.97897 * 0.53909 * 19 18 17 22 22 F 1.35097 * 120.02394 * 179.70379 * 21 19 18 23 23 C 1.38353 * 119.95678 * 359.71260 * 21 19 18 24 24 C 1.38412 * 119.97647 * 294.99606 * 17 14 13 25 25 F 1.35097 * 119.99354 * 359.97438 * 24 17 14 26 26 H 0.97002 * 119.99921 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00002 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.47013 * 60.00525 * 12 10 9 29 29 H 1.08999 * 109.47128 * 300.00738 * 12 10 9 30 30 H 0.97001 * 120.00384 * 345.00836 * 13 12 10 31 31 H 1.07995 * 119.98865 * 0.02562 * 18 17 14 32 32 H 1.07999 * 120.01443 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 7 2.1956 -5.9764 -0.0027 14 16 1.6820 -7.5050 0.3745 15 8 2.8186 -8.3501 0.2591 16 8 0.9179 -7.3888 1.5669 17 6 0.5600 -8.0047 -0.8888 18 6 0.8836 -9.0589 -1.7225 19 6 0.0011 -9.4553 -2.7117 20 9 0.3153 -10.4889 -3.5230 21 6 -1.2035 -8.7876 -2.8740 22 9 -2.0632 -9.1700 -3.8434 23 6 -1.5242 -7.7293 -2.0425 24 6 -0.6422 -7.3379 -1.0494 25 9 -0.9551 -6.3045 -0.2373 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3907 -0.0005 28 1 0.6168 -4.9201 -0.8920 29 1 0.6173 -4.9212 0.8879 30 1 3.1276 -5.8178 -0.2199 31 1 1.8237 -9.5760 -1.5989 32 1 -2.4622 -7.2089 -2.1677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352533672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:27 Heat of formation + Delta-G solvation = -206.920903 kcal Electronic energy + Delta-G solvation = -26800.084915 eV Core-core repulsion = 22053.025124 eV Total energy + Delta-G solvation = -4747.059791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.14271 -49.80708 -49.17683 -39.25482 -38.50541 -37.36756 -36.03668 -34.78797 -33.79460 -31.95687 -31.39995 -30.71772 -27.27738 -24.58992 -24.40587 -23.77017 -19.99626 -19.78422 -19.15335 -18.70477 -18.35682 -18.15244 -17.61970 -17.09440 -17.04874 -16.42391 -15.93920 -15.74179 -15.56193 -15.54291 -15.30705 -14.94016 -14.84230 -14.61340 -14.33292 -14.16545 -13.68845 -13.25293 -12.70266 -12.58255 -12.50250 -12.40436 -12.24015 -12.13733 -12.01122 -11.60275 -11.42266 -11.17470 -10.42714 -10.34170 -10.09193 -9.69536 -9.57999 -9.39028 -8.65246 -8.13202 -6.54698 -3.96476 -0.32710 0.13837 0.16400 2.23553 2.80939 2.91052 3.08299 3.17628 3.21335 3.28089 3.45212 3.65223 3.68743 3.70540 4.06659 4.18163 4.35637 4.58660 4.75074 4.80307 4.97473 5.03796 5.11840 5.20723 5.31468 5.63980 5.75414 5.91898 6.18767 7.09241 7.43892 7.90107 8.42088 9.02268 9.35585 9.83758 10.62236 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.003192 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.884846 B = 8769.312395 C = 9658.332151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.932 3.068 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.304 4.304 8 H 0.107 0.893 9 N -0.550 5.550 10 C 0.434 3.566 11 O -0.589 6.589 12 C 0.101 3.899 13 N -1.089 6.089 14 S 2.704 3.296 15 O -0.948 6.948 16 O -0.937 6.937 17 C -0.703 4.703 18 C 0.004 3.996 19 C 0.039 3.961 20 F -0.118 7.118 21 C 0.153 3.847 22 F -0.110 7.110 23 C -0.181 4.181 24 C 0.221 3.779 25 F -0.100 7.100 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.431 0.569 31 H 0.179 0.821 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 -17.173 -5.196 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.186 5.186 10 C 0.218 3.782 11 O -0.475 6.475 12 C -0.029 4.029 13 N -0.856 5.856 14 S 2.787 3.213 15 O -0.938 6.938 16 O -0.927 6.927 17 C -0.786 4.786 18 C -0.016 4.016 19 C 0.018 3.982 20 F -0.096 7.096 21 C 0.132 3.868 22 F -0.088 7.088 23 C -0.201 4.201 24 C 0.200 3.800 25 F -0.078 7.078 26 H 0.084 0.916 27 H 0.229 0.771 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.272 0.728 31 H 0.196 0.804 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.714 -17.534 -4.514 18.709 hybrid contribution -0.639 0.948 -1.088 1.578 sum -5.353 -16.586 -5.602 18.307 Atomic orbital electron populations 1.69616 1.06001 1.28428 1.49487 1.25312 0.95668 0.99914 0.96776 0.85762 0.79731 0.80808 0.77820 1.19113 1.20652 1.20593 1.19793 0.93534 0.81945 1.48088 0.87567 1.41814 1.09440 1.04480 1.62844 1.19550 0.88314 0.84603 0.85748 1.90515 1.13574 1.86536 1.56826 1.21194 0.91247 0.87380 1.03064 1.55052 1.20379 1.22203 1.87936 1.01933 0.73309 0.72462 0.73645 1.93604 1.48329 1.65316 1.86557 1.93650 1.72434 1.85759 1.40821 1.31348 1.13709 1.09263 1.24279 1.20742 0.99167 0.92544 0.89126 1.17595 0.94800 0.90718 0.95071 1.91591 1.92700 1.54711 1.70605 1.17481 0.87140 0.94338 0.87827 1.91618 1.67993 1.89811 1.59352 1.21090 1.03173 0.99178 0.96624 1.16629 0.91456 0.84090 0.87842 1.91714 1.92525 1.53821 1.69729 0.91648 0.77077 0.90365 0.88118 0.72847 0.80415 0.81005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.15 13.05 55.50 0.72 -22.43 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.11 29.55 -169.99 -5.02 15.09 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.04 9.68 -14.93 -0.14 -8.19 16 8 H 0.11 2.95 7.16 -52.48 -0.38 2.57 16 9 N -0.55 -13.08 5.29 -10.96 -0.06 -13.13 16 10 C 0.43 9.50 7.85 -10.99 -0.09 9.41 16 11 O -0.59 -14.73 15.30 5.54 0.08 -14.65 16 12 C 0.10 1.63 5.04 -5.19 -0.03 1.61 16 13 N -1.09 -15.89 5.93 -11.66 -0.07 -15.96 16 14 S 2.70 35.15 5.48 -107.50 -0.59 34.56 16 15 O -0.95 -13.36 16.97 -57.17 -0.97 -14.33 16 16 O -0.94 -14.57 16.88 -57.17 -0.97 -15.54 16 17 C -0.70 -7.47 5.89 -39.51 -0.23 -7.70 16 18 C 0.00 0.04 9.52 -39.53 -0.38 -0.34 16 19 C 0.04 0.37 7.31 -39.37 -0.29 0.08 16 20 F -0.12 -1.15 17.18 2.25 0.04 -1.11 16 21 C 0.15 1.36 7.31 -39.37 -0.29 1.08 16 22 F -0.11 -1.01 17.18 2.25 0.04 -0.97 16 23 C -0.18 -1.51 10.00 -39.45 -0.39 -1.91 16 24 C 0.22 2.27 6.81 -39.43 -0.27 2.00 16 25 F -0.10 -1.13 12.92 2.25 0.03 -1.10 16 26 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 27 H 0.40 8.87 7.90 -40.82 -0.32 8.55 16 28 H 0.08 1.05 6.75 -51.93 -0.35 0.70 16 29 H 0.10 1.52 7.24 -51.93 -0.38 1.15 16 30 H 0.43 6.48 7.70 -34.47 -0.27 6.21 16 31 H 0.18 1.34 7.33 -52.49 -0.38 0.96 16 32 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 312.43 15.07 4.71 4.71 Total: -1.00 -31.82 312.43 -5.88 -37.70 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -1.63 Total: 10.56 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.20 Total: -3.40 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.60 Total: -51.52 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -1.85 Total: -44.52 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.11 Total: -3.18 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 35.15 SS G_CDS: -0.59 Total: 34.56 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.82 -5.88 -37.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352533672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.221 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds