Wall clock time and date at job start Tue Mar 31 2020 20:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00085 * 2 1 4 4 H 1.48504 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47215 * 300.00135 * 3 2 1 6 6 H 1.48499 * 109.47215 * 60.00109 * 3 2 1 7 7 C 1.38943 * 119.99809 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99956 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00285 * 359.97438 * 7 2 1 10 10 C 1.34772 * 120.00270 * 179.97438 * 9 7 2 11 11 O 1.21299 * 119.99869 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00219 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47212 * 180.02562 * 12 10 9 14 14 S 1.65602 * 119.99612 * 164.72359 * 13 12 10 15 15 O 1.42104 * 106.40175 * 178.81816 * 14 13 12 16 16 O 1.42095 * 106.40656 * 311.73868 * 14 13 12 17 17 C 1.76203 * 107.21635 * 65.28001 * 14 13 12 18 18 C 1.38246 * 119.97456 * 114.71905 * 17 14 13 19 19 C 1.38362 * 120.02173 * 179.76396 * 18 17 14 20 20 F 1.35098 * 120.01422 * 180.25578 * 19 18 17 21 21 C 1.38688 * 119.97897 * 0.53909 * 19 18 17 22 22 F 1.35097 * 120.02394 * 179.70379 * 21 19 18 23 23 C 1.38353 * 119.95678 * 359.71260 * 21 19 18 24 24 C 1.38412 * 119.97647 * 294.99606 * 17 14 13 25 25 F 1.35097 * 119.99354 * 359.97438 * 24 17 14 26 26 H 0.97002 * 119.99921 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00002 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.47013 * 60.00525 * 12 10 9 29 29 H 1.08999 * 109.47128 * 300.00738 * 12 10 9 30 30 H 0.97001 * 120.00384 * 345.00836 * 13 12 10 31 31 H 1.07995 * 119.98865 * 0.02562 * 18 17 14 32 32 H 1.07999 * 120.01443 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8895 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2101 -3.5578 -0.0021 12 6 1.2437 -4.8629 -0.0022 13 7 2.1956 -5.9764 -0.0027 14 16 1.6820 -7.5050 0.3745 15 8 2.8186 -8.3501 0.2591 16 8 0.9179 -7.3888 1.5669 17 6 0.5600 -8.0047 -0.8888 18 6 0.8836 -9.0589 -1.7225 19 6 0.0011 -9.4553 -2.7117 20 9 0.3153 -10.4889 -3.5230 21 6 -1.2035 -8.7876 -2.8740 22 9 -2.0632 -9.1700 -3.8434 23 6 -1.5242 -7.7293 -2.0425 24 6 -0.6422 -7.3379 -1.0494 25 9 -0.9551 -6.3045 -0.2373 26 1 -0.4850 0.8401 0.0004 27 1 0.3533 -2.3907 -0.0005 28 1 0.6168 -4.9201 -0.8920 29 1 0.6173 -4.9212 0.8879 30 1 3.1276 -5.8178 -0.2199 31 1 1.8237 -9.5760 -1.5989 32 1 -2.4622 -7.2089 -2.1677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352533672.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:26 Heat of formation + Delta-G solvation = -231.500888 kcal Electronic energy + Delta-G solvation = -26801.150784 eV Core-core repulsion = 22053.025124 eV Total energy + Delta-G solvation = -4748.125659 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 338.038 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.87121 -50.63447 -49.91327 -40.26689 -40.01222 -38.49694 -37.16869 -36.36455 -35.44265 -33.31779 -32.70310 -31.48407 -28.81893 -26.19487 -25.34306 -24.54338 -21.47196 -20.96538 -20.09798 -20.01475 -19.54673 -19.17724 -18.75095 -17.95377 -17.88713 -17.44229 -17.30004 -16.91972 -16.60173 -16.40483 -16.28648 -16.12751 -16.04968 -15.88107 -15.59078 -15.31442 -14.96829 -14.24242 -14.04679 -13.87747 -13.60401 -13.48643 -13.34777 -13.31762 -13.27654 -13.20985 -12.91246 -12.40626 -12.33525 -12.09874 -11.54836 -10.86175 -10.77196 -10.45552 -10.15374 -10.04996 -8.48111 -5.97231 -1.14749 -0.86626 -0.56776 1.37197 1.43709 1.45877 1.58508 1.79306 1.95127 2.16442 2.30446 2.32876 2.53861 2.85536 2.94839 3.09349 3.19177 3.35466 3.54910 3.85734 3.95130 4.04300 4.22950 4.33389 4.34541 4.39879 4.51863 4.65762 5.19467 5.42177 5.84523 5.98825 6.53492 7.08626 7.48951 8.01212 8.68821 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.016664 B = 0.003192 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.884846 B = 8769.312395 C = 9658.332151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.083 0.917 9 N -0.561 5.561 10 C 0.434 3.566 11 O -0.623 6.623 12 C 0.111 3.889 13 N -1.096 6.096 14 S 2.723 3.277 15 O -0.960 6.960 16 O -0.964 6.964 17 C -0.704 4.704 18 C 0.008 3.992 19 C 0.039 3.961 20 F -0.120 7.120 21 C 0.158 3.842 22 F -0.109 7.109 23 C -0.166 4.166 24 C 0.210 3.790 25 F -0.108 7.108 26 H 0.279 0.721 27 H 0.401 0.599 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.430 0.570 31 H 0.193 0.807 32 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.417 -17.602 -6.000 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.466 4.466 8 H 0.101 0.899 9 N -0.197 5.197 10 C 0.220 3.780 11 O -0.510 6.510 12 C -0.019 4.019 13 N -0.860 5.860 14 S 2.810 3.190 15 O -0.950 6.950 16 O -0.954 6.954 17 C -0.790 4.790 18 C -0.012 4.012 19 C 0.018 3.982 20 F -0.099 7.099 21 C 0.137 3.863 22 F -0.087 7.087 23 C -0.186 4.186 24 C 0.189 3.811 25 F -0.086 7.086 26 H 0.089 0.911 27 H 0.235 0.765 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.269 0.731 31 H 0.210 0.790 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.760 -17.965 -5.293 19.594 hybrid contribution -0.344 0.951 -0.896 1.351 sum -6.104 -17.014 -6.189 19.106 Atomic orbital electron populations 1.69665 1.06790 1.29455 1.49493 1.26025 0.96511 1.02374 0.95934 0.84877 0.78117 0.77120 0.78267 1.19725 1.19610 1.19785 1.19741 0.92905 0.83697 1.50210 0.89859 1.41855 1.09640 1.04526 1.63714 1.20486 0.88220 0.85946 0.83385 1.90491 1.15442 1.87466 1.57648 1.21169 0.90997 0.84470 1.05294 1.55087 1.20195 1.22442 1.88314 1.01072 0.72942 0.71583 0.73401 1.93584 1.49317 1.65228 1.86908 1.93615 1.72885 1.85926 1.42971 1.30872 1.13515 1.10368 1.24272 1.20862 0.99733 0.92017 0.88605 1.17630 0.94965 0.90673 0.94974 1.91590 1.92754 1.54858 1.70653 1.17530 0.86879 0.94224 0.87690 1.91627 1.67946 1.89791 1.59341 1.21274 1.03585 0.98531 0.95201 1.16774 0.91741 0.84182 0.88404 1.91693 1.92570 1.54207 1.70084 0.91120 0.76472 0.87087 0.86831 0.73137 0.79017 0.78341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.82 13.05 21.66 0.28 -46.53 16 2 C -0.01 -0.39 5.50 84.92 0.47 0.08 16 3 Si 0.99 41.01 29.55 68.60 2.03 43.04 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.34 -18.07 9.68 84.04 0.81 -17.26 16 8 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 9 N -0.56 -26.89 5.29 -306.98 -1.62 -28.51 16 10 C 0.43 19.07 7.85 87.66 0.69 19.75 16 11 O -0.62 -31.72 15.30 -3.09 -0.05 -31.77 16 12 C 0.11 3.45 5.04 85.63 0.43 3.88 16 13 N -1.10 -31.22 5.93 -190.79 -1.13 -32.35 16 14 S 2.72 68.21 5.48 -56.49 -0.31 67.90 16 15 O -0.96 -26.24 16.97 -128.00 -2.17 -28.41 16 16 O -0.96 -29.26 16.88 -128.00 -2.16 -31.42 16 17 C -0.70 -13.68 5.89 22.31 0.13 -13.55 16 18 C 0.01 0.12 9.52 22.30 0.21 0.34 16 19 C 0.04 0.63 7.31 22.41 0.16 0.80 16 20 F -0.12 -2.11 17.18 44.97 0.77 -1.33 16 21 C 0.16 2.39 7.31 22.40 0.16 2.56 16 22 F -0.11 -1.72 17.18 44.97 0.77 -0.95 16 23 C -0.17 -2.29 10.00 22.35 0.22 -2.07 16 24 C 0.21 3.84 6.81 22.37 0.15 3.99 16 25 F -0.11 -2.22 12.92 44.97 0.58 -1.64 16 26 H 0.28 13.37 8.31 -92.71 -0.77 12.60 16 27 H 0.40 18.00 7.90 -92.71 -0.73 17.27 16 28 H 0.11 2.75 6.75 -2.39 -0.02 2.74 16 29 H 0.11 3.30 7.24 -2.39 -0.02 3.28 16 30 H 0.43 12.85 7.70 -96.74 -0.75 12.11 16 31 H 0.19 2.54 7.33 -2.91 -0.02 2.52 16 32 H 0.20 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -67.69 312.43 0.22 -67.48 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.23 Total: 25.99 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 3.45 Total: -1.48 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -2.47 Total: -107.39 kcal Atomic # 8 Polarization: -87.23 SS G_CDS: -4.38 Total: -91.61 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 2.13 Total: -3.92 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 68.21 SS G_CDS: -0.31 Total: 67.90 kcal Total: -67.69 0.22 -67.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352533672.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.025 kcal (2) G-P(sol) polarization free energy of solvation -67.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -231.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds