Wall clock time and date at job start Tue Mar 31 2020 20:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42899 * 114.00507 * 2 1 4 4 C 1.52999 * 109.47493 * 180.02562 * 3 2 1 5 5 S 1.81395 * 109.46986 * 180.02562 * 4 3 2 6 6 O 1.42105 * 110.54530 * 291.62628 * 5 4 3 7 7 O 1.42101 * 110.54333 * 68.37799 * 5 4 3 8 8 N 1.65599 * 104.44748 * 180.02562 * 5 4 3 9 9 C 1.38502 * 120.00293 * 65.00130 * 8 5 4 10 10 N 1.30018 * 125.37029 * 179.97438 * 9 8 5 11 11 C 1.31716 * 117.08570 * 180.02562 * 10 9 8 12 12 C 1.50701 * 122.22574 * 179.97438 * 11 10 9 13 13 C 1.34562 * 115.54898 * 0.02562 * 11 10 9 14 14 S 1.76194 * 125.91631 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00280 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00143 * 359.97438 * 15 14 13 17 17 C 1.38378 * 120.00155 * 180.02562 * 15 14 13 18 18 N 1.31847 * 120.00075 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99834 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47437 * 89.99841 * 19 17 15 21 21 H 1.48506 * 109.47092 * 209.99228 * 19 17 15 22 22 H 1.48491 * 109.47399 * 329.99083 * 19 17 15 23 23 S 1.76134 * 125.36463 * 359.69400 * 9 8 5 24 24 H 1.09003 * 109.47617 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46867 * 299.99785 * 1 2 3 26 26 H 1.08998 * 109.47602 * 59.99773 * 1 2 3 27 27 H 1.09004 * 109.46662 * 60.00144 * 3 2 1 28 28 H 1.09005 * 109.47098 * 300.00450 * 3 2 1 29 29 H 1.09003 * 109.46593 * 60.00162 * 4 3 2 30 30 H 1.08994 * 109.46870 * 300.00530 * 4 3 2 31 31 H 0.97001 * 120.00004 * 244.99733 * 8 5 4 32 32 H 1.08990 * 109.47522 * 90.02231 * 12 11 10 33 33 H 1.09006 * 109.46999 * 210.02734 * 12 11 10 34 34 H 1.09003 * 109.46535 * 330.01917 * 12 11 10 35 35 H 0.97002 * 119.99905 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 16 4.2733 2.8417 0.0001 6 8 4.0277 3.4975 -1.2364 7 8 4.0287 3.4959 1.2376 8 7 5.9063 2.5669 -0.0014 9 6 6.5043 1.9530 -1.0894 10 7 7.7723 1.6880 -1.2010 11 6 8.1663 1.0984 -2.3110 12 6 9.6082 0.7392 -2.5620 13 6 7.1960 0.8392 -3.2065 14 16 7.4156 0.0630 -4.7729 15 6 5.7518 0.0684 -5.3531 16 1 4.9677 0.4885 -4.7406 17 6 5.4497 -0.4667 -6.5929 18 7 6.4068 -0.9801 -7.3404 19 14 3.6857 -0.4616 -7.2076 20 1 3.4278 0.7914 -7.9617 21 1 3.4688 -1.6293 -8.0991 22 1 2.7582 -0.5430 -6.0508 23 16 5.6658 1.4019 -2.5370 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8567 0.6438 -0.8909 30 1 3.8574 0.6434 0.8890 31 1 6.4441 2.8359 0.7597 32 1 9.8024 -0.2664 -2.1893 33 1 9.8107 0.7754 -3.6325 34 1 10.2546 1.4491 -2.0458 35 1 6.1950 -1.3549 -8.2097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355316521.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:13 Heat of formation + Delta-G solvation = -100.471844 kcal Electronic energy + Delta-G solvation = -22487.582676 eV Core-core repulsion = 18865.192425 eV Total energy + Delta-G solvation = -3622.390251 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 338.026 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54816 -39.05343 -38.62676 -37.50103 -36.58568 -34.82092 -33.17358 -31.82480 -28.85609 -27.74044 -27.53653 -24.99726 -24.68959 -21.99651 -20.92225 -19.95801 -19.59216 -18.63735 -18.03607 -17.67567 -17.43766 -17.08125 -17.02284 -16.55578 -16.10633 -16.05105 -15.98273 -15.07127 -14.71874 -14.57753 -13.98232 -13.77632 -13.59673 -13.51961 -13.44329 -13.33803 -13.27201 -13.07464 -12.91699 -12.85380 -12.63602 -12.44396 -12.30308 -12.08117 -12.04984 -11.43759 -10.97437 -10.81657 -10.66972 -10.60189 -9.64133 -8.58493 -8.43581 -6.31848 -1.34037 -0.29781 -0.10401 0.49533 1.05729 1.22896 1.35459 1.41106 1.52955 1.78708 2.12678 2.18288 2.77696 2.81390 2.81879 3.06417 3.37146 3.43467 3.60651 4.03055 4.09031 4.29152 4.38891 4.41229 4.52509 4.56904 4.82190 4.82793 4.86947 4.95945 5.28878 5.34964 5.62828 5.99897 6.00630 6.72936 6.86561 8.48929 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.009931 B = 0.005048 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.859344 B = 5545.679760 C = 7713.989232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.403 6.403 3 C 0.065 3.935 4 C -0.630 4.630 5 S 2.621 3.379 6 O -0.954 6.954 7 O -0.941 6.941 8 N -0.992 5.992 9 C 0.252 3.748 10 N -0.474 5.474 11 C 0.038 3.962 12 C -0.064 4.064 13 C -0.243 4.243 14 S 0.116 5.884 15 C -0.579 4.579 16 H 0.086 0.914 17 C 0.037 3.963 18 N -0.894 5.894 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.266 1.266 22 H -0.261 1.261 23 S 0.091 5.909 24 H 0.101 0.899 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.175 0.825 31 H 0.445 0.555 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 2.895 14.950 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.323 6.323 3 C -0.013 4.013 4 C -0.762 4.762 5 S 2.713 3.287 6 O -0.944 6.944 7 O -0.931 6.931 8 N -0.747 5.747 9 C -0.124 4.124 10 N -0.195 5.195 11 C -0.104 4.104 12 C -0.124 4.124 13 C -0.479 4.479 14 S 0.365 5.635 15 C -0.727 4.727 16 H 0.104 0.896 17 C -0.171 4.171 18 N -0.528 5.528 19 Si 0.803 3.197 20 H -0.190 1.190 21 H -0.191 1.191 22 H -0.185 1.185 23 S 0.334 5.666 24 H 0.119 0.881 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.091 0.909 29 H 0.156 0.844 30 H 0.193 0.807 31 H 0.286 0.714 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.199 3.120 14.051 16.094 hybrid contribution -0.906 -0.123 0.141 0.925 sum -8.105 2.997 14.193 16.616 Atomic orbital electron populations 1.23104 0.78707 1.04556 1.01662 1.87911 1.22086 1.26550 1.95712 1.22220 0.88391 0.87253 1.03481 1.30722 1.06865 1.23710 1.14856 1.04917 0.72243 0.77318 0.74174 1.93676 1.83039 1.71752 1.45900 1.93645 1.82759 1.72170 1.44570 1.52766 1.27476 1.70801 1.23684 1.23677 0.92447 1.03206 0.93101 1.66113 1.12178 1.17282 1.23899 1.19815 0.98375 1.03788 0.88379 1.20297 0.87065 1.02604 1.02424 1.28173 0.97309 1.13888 1.08496 1.83019 1.12933 1.65039 1.02498 1.23489 0.94309 1.47572 1.07355 0.89596 1.25862 1.03450 0.92664 0.95092 1.70095 1.34522 1.36251 1.11927 0.85178 0.76883 0.78875 0.78790 1.19016 1.19061 1.18502 1.85226 1.10455 1.59264 1.11698 0.88058 0.91740 0.92978 0.88914 0.90899 0.84412 0.80686 0.71370 0.89784 0.91028 0.89463 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -9.01 10.70 -148.98 -1.59 -10.60 16 3 C 0.06 1.28 5.95 71.98 0.43 1.70 16 4 C -0.63 -13.19 6.25 71.98 0.45 -12.74 16 5 S 2.62 63.71 5.05 -56.49 -0.29 63.43 16 6 O -0.95 -30.28 16.55 -127.65 -2.11 -32.40 16 7 O -0.94 -23.59 18.08 -127.65 -2.31 -25.89 16 8 N -0.99 -25.30 5.75 -56.40 -0.32 -25.63 16 9 C 0.25 8.56 8.17 179.26 1.46 10.03 16 10 N -0.47 -17.15 10.56 -185.12 -1.96 -19.10 16 11 C 0.04 1.47 6.73 41.73 0.28 1.75 16 12 C -0.06 -2.01 10.02 71.24 0.71 -1.30 16 13 C -0.24 -10.57 6.67 66.98 0.45 -10.12 16 14 S 0.12 5.69 20.73 -56.49 -1.17 4.51 16 15 C -0.58 -30.77 9.26 67.85 0.63 -30.14 16 16 H 0.09 4.46 5.97 -2.91 -0.02 4.45 16 17 C 0.04 1.93 5.49 84.72 0.46 2.40 16 18 N -0.89 -48.56 13.22 21.58 0.29 -48.27 16 19 Si 0.98 40.85 29.55 68.60 2.03 42.88 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 S 0.09 3.58 17.32 -56.49 -0.98 2.60 16 24 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.14 3.40 6.25 -2.39 -0.01 3.38 16 30 H 0.18 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.45 8.84 8.91 -96.74 -0.86 7.98 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.07 2.29 7.37 -2.38 -0.02 2.27 16 34 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.28 14.18 8.32 -92.71 -0.77 13.40 16 Total: -1.00 -69.06 340.33 -2.01 -71.07 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.28 Total: 14.34 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 6.13 Total: -36.94 kcal Atomic # 7 Polarization: -91.01 SS G_CDS: -1.99 Total: -93.00 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -6.01 Total: -68.90 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 16 Polarization: 72.98 SS G_CDS: -2.43 Total: 70.55 kcal Total: -69.06 -2.01 -71.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355316521.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.398 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds