Wall clock time and date at job start Tue Mar 31 2020 21:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48499 * 109.46727 * 269.99492 * 3 2 1 5 5 H 1.48500 * 109.47264 * 29.99600 * 3 2 1 6 6 H 1.48501 * 109.47227 * 149.99609 * 3 2 1 7 7 C 1.37881 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99527 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00051 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47030 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99995 * 354.91474 * 11 10 9 13 13 N 1.34775 * 120.00214 * 174.90483 * 11 10 9 14 14 C 1.47228 * 121.33364 * 184.64233 * 13 11 10 15 15 C 1.53274 * 107.65565 * 115.81921 * 14 13 11 16 16 C 1.50600 * 110.83293 * 47.65171 * 15 14 13 17 17 C 1.38986 * 117.61147 * 160.40253 * 16 15 14 18 18 C 1.37885 * 120.59635 * 178.77144 * 17 16 15 19 19 C 1.38357 * 119.81620 * 0.04841 * 18 17 16 20 20 Br 1.89102 * 120.15270 * 180.28479 * 19 18 17 21 21 C 1.38049 * 119.69904 * 0.26876 * 19 18 17 22 22 C 1.37686 * 122.84935 * 339.68988 * 16 15 14 23 23 C 1.46677 * 121.33181 * 4.92865 * 13 11 10 24 24 H 0.96995 * 119.99877 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46989 * 300.00288 * 9 7 2 26 26 H 1.09002 * 109.47065 * 60.00256 * 9 7 2 27 27 H 0.97001 * 120.00243 * 0.02562 * 10 9 7 28 28 H 1.09006 * 109.77252 * 235.40900 * 14 13 11 29 29 H 1.09003 * 109.77649 * 356.20390 * 14 13 11 30 30 H 1.09001 * 109.30806 * 287.24182 * 15 14 13 31 31 H 1.09001 * 109.12387 * 167.94068 * 15 14 13 32 32 H 1.08001 * 119.69941 * 358.76093 * 17 16 15 33 33 H 1.08001 * 120.09478 * 180.02562 * 18 17 16 34 34 H 1.07993 * 119.75297 * 179.97438 * 21 19 18 35 35 H 1.08999 * 109.44404 * 344.44376 * 23 13 11 36 36 H 1.09004 * 109.43663 * 104.36222 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1142 -1.9017 -0.0917 13 7 5.7749 -4.0878 0.1071 14 6 7.2136 -4.3827 0.2119 15 6 7.4591 -5.0176 1.5851 16 6 6.4572 -6.1084 1.8578 17 6 6.7750 -7.0457 2.8336 18 6 5.8916 -8.0558 3.1506 19 6 4.6776 -8.1399 2.4922 20 35 3.4556 -9.5165 2.9250 21 6 4.3624 -7.2141 1.5179 22 6 5.2532 -6.1991 1.1960 23 6 4.8515 -5.2273 0.1149 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6805 -0.8888 26 1 3.8745 -0.6801 0.8912 27 1 3.3695 -3.3127 0.0021 28 1 7.5058 -5.0775 -0.5755 29 1 7.7867 -3.4599 0.1217 30 1 7.3744 -4.2521 2.3565 31 1 8.4639 -5.4396 1.6090 32 1 7.7225 -6.9823 3.3481 33 1 6.1466 -8.7796 3.9106 34 1 3.4153 -7.2791 1.0031 35 1 3.8386 -4.8722 0.3046 36 1 4.8850 -5.7280 -0.8527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355676988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:10 Heat of formation + Delta-G solvation = 2.671482 kcal Electronic energy + Delta-G solvation = -20674.793624 eV Core-core repulsion = 17398.040883 eV Total energy + Delta-G solvation = -3276.752741 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.60263 -39.09605 -36.13378 -34.44450 -33.37970 -32.29522 -32.03946 -30.82206 -28.89053 -27.76579 -25.74471 -23.75893 -22.63115 -22.05393 -20.81869 -19.18494 -18.03576 -16.86859 -16.43811 -15.94687 -15.83723 -15.23731 -14.91305 -14.48006 -14.43451 -13.94178 -13.66643 -13.52732 -13.12905 -12.99461 -12.52880 -12.42782 -12.36643 -12.13545 -11.92872 -11.42198 -11.01658 -10.95979 -10.76854 -10.72029 -10.52696 -9.97247 -9.64423 -9.46905 -9.14335 -8.78725 -8.71907 -8.61866 -8.03024 -6.20850 -4.22965 0.82440 0.99118 1.38388 2.95722 3.27432 3.28026 3.34906 3.43160 3.67413 4.33339 4.33992 4.43611 4.49000 4.60933 4.79694 4.95219 5.03869 5.13276 5.14844 5.21254 5.37633 5.46103 5.54584 5.59024 5.73937 5.88242 5.91065 5.99391 6.24766 6.51282 6.53185 6.75813 7.10381 7.20887 7.34771 7.47355 8.23905 8.61843 8.78050 9.12164 9.39892 10.91097 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.003057 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.652800 B = 9155.703186 C =10750.671089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.237 3.763 10 N -0.722 5.722 11 C 0.704 3.296 12 O -0.598 6.598 13 N -0.638 5.638 14 C 0.131 3.869 15 C -0.101 4.101 16 C -0.048 4.048 17 C -0.116 4.116 18 C -0.092 4.092 19 C -0.092 4.092 20 Br -0.054 7.054 21 C -0.082 4.082 22 C -0.085 4.085 23 C 0.152 3.848 24 H 0.268 0.732 25 H 0.020 0.980 26 H 0.022 0.978 27 H 0.391 0.609 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.096 0.904 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.584 -21.851 5.595 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.115 3.885 10 N -0.375 5.375 11 C 0.405 3.595 12 O -0.477 6.477 13 N -0.377 5.377 14 C 0.007 3.993 15 C -0.139 4.139 16 C -0.049 4.049 17 C -0.134 4.134 18 C -0.112 4.112 19 C -0.172 4.172 20 Br 0.032 6.968 21 C -0.102 4.102 22 C -0.086 4.086 23 C 0.028 3.972 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.227 0.773 28 H 0.087 0.913 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.154 0.846 35 H 0.114 0.886 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.486 -21.485 5.698 25.495 hybrid contribution 0.129 0.633 0.032 0.647 sum 12.615 -20.852 5.730 25.036 Atomic orbital electron populations 1.69879 1.06207 1.27426 1.49461 1.24772 0.94776 0.99139 0.93853 0.86813 0.80578 0.83202 0.79076 1.19818 1.20933 1.18471 1.21076 0.88505 0.95193 1.53322 0.90342 1.19386 0.94900 0.77530 0.96693 1.45559 1.03679 1.11161 1.77131 1.15925 0.83688 0.81825 0.78062 1.90857 1.55450 1.42574 1.58783 1.47191 1.06756 1.04320 1.79400 1.21467 0.81184 1.01397 0.95227 1.21024 0.97357 0.96256 0.99263 1.19677 0.94520 0.95703 0.94994 1.21186 0.99900 0.94557 0.97795 1.21003 0.92319 0.98700 0.99146 1.21636 0.95962 0.97524 1.02049 1.96726 1.59038 1.47536 1.93515 1.21030 0.99758 0.93171 0.96268 1.19853 0.94021 0.96492 0.98280 1.20381 0.94269 0.86080 0.96421 0.92260 0.96172 0.95970 0.77336 0.91311 0.88076 0.89586 0.89491 0.85136 0.85086 0.84593 0.88607 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.54 -14.90 9.83 -34.44 -0.34 -15.24 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.24 5.90 4.50 -5.19 -0.02 5.87 16 10 N -0.72 -14.96 5.46 -66.41 -0.36 -15.33 16 11 C 0.70 13.88 8.32 -86.92 -0.72 13.16 16 12 O -0.60 -13.90 15.84 5.29 0.08 -13.81 16 13 N -0.64 -9.38 2.93 -179.83 -0.53 -9.91 16 14 C 0.13 1.54 6.47 -3.50 -0.02 1.52 16 15 C -0.10 -0.99 5.88 -27.79 -0.16 -1.15 16 16 C -0.05 -0.50 5.76 -104.60 -0.60 -1.11 16 17 C -0.12 -1.04 9.59 -39.43 -0.38 -1.42 16 18 C -0.09 -0.85 9.79 -39.67 -0.39 -1.23 16 19 C -0.09 -0.94 6.22 -39.61 -0.25 -1.19 16 20 Br -0.05 -0.51 33.71 -68.01 -2.29 -2.81 16 21 C -0.08 -0.86 9.37 -39.43 -0.37 -1.23 16 22 C -0.08 -0.94 5.82 -104.55 -0.61 -1.55 16 23 C 0.15 1.81 6.16 -5.04 -0.03 1.78 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 26 H 0.02 0.58 7.20 -51.93 -0.37 0.21 16 27 H 0.39 7.18 5.91 -40.82 -0.24 6.94 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.10 1.34 7.07 -51.93 -0.37 0.97 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 32 H 0.13 0.87 8.05 -52.49 -0.42 0.45 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.14 1.27 8.05 -52.49 -0.42 0.84 16 35 H 0.10 1.16 5.81 -51.93 -0.30 0.86 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 319.71 15.07 4.82 4.82 Total: -1.00 -32.54 319.71 -10.38 -42.92 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.21 Total: 2.67 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -3.99 Total: 0.32 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.12 Total: -50.91 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.54 -10.38 -42.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355676988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.596 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds