Wall clock time and date at job start Tue Mar 31 2020 21:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48499 * 109.46727 * 269.99492 * 3 2 1 5 5 H 1.48500 * 109.47264 * 29.99600 * 3 2 1 6 6 H 1.48501 * 109.47227 * 149.99609 * 3 2 1 7 7 C 1.37881 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99527 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00051 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47030 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00065 * 179.97438 * 10 9 7 12 12 O 1.21587 * 119.99995 * 354.91474 * 11 10 9 13 13 N 1.34775 * 120.00214 * 174.90483 * 11 10 9 14 14 C 1.47228 * 121.33364 * 184.64233 * 13 11 10 15 15 C 1.53274 * 107.65565 * 115.81921 * 14 13 11 16 16 C 1.50600 * 110.83293 * 47.65171 * 15 14 13 17 17 C 1.38986 * 117.61147 * 160.40253 * 16 15 14 18 18 C 1.37885 * 120.59635 * 178.77144 * 17 16 15 19 19 C 1.38357 * 119.81620 * 0.04841 * 18 17 16 20 20 Br 1.89102 * 120.15270 * 180.28479 * 19 18 17 21 21 C 1.38049 * 119.69904 * 0.26876 * 19 18 17 22 22 C 1.37686 * 122.84935 * 339.68988 * 16 15 14 23 23 C 1.46677 * 121.33181 * 4.92865 * 13 11 10 24 24 H 0.96995 * 119.99877 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46989 * 300.00288 * 9 7 2 26 26 H 1.09002 * 109.47065 * 60.00256 * 9 7 2 27 27 H 0.97001 * 120.00243 * 0.02562 * 10 9 7 28 28 H 1.09006 * 109.77252 * 235.40900 * 14 13 11 29 29 H 1.09003 * 109.77649 * 356.20390 * 14 13 11 30 30 H 1.09001 * 109.30806 * 287.24182 * 15 14 13 31 31 H 1.09001 * 109.12387 * 167.94068 * 15 14 13 32 32 H 1.08001 * 119.69941 * 358.76093 * 17 16 15 33 33 H 1.08001 * 120.09478 * 180.02562 * 18 17 16 34 34 H 1.07993 * 119.75297 * 179.97438 * 21 19 18 35 35 H 1.08999 * 109.44404 * 344.44376 * 23 13 11 36 36 H 1.09004 * 109.43663 * 104.36222 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1142 -1.9017 -0.0917 13 7 5.7749 -4.0878 0.1071 14 6 7.2136 -4.3827 0.2119 15 6 7.4591 -5.0176 1.5851 16 6 6.4572 -6.1084 1.8578 17 6 6.7750 -7.0457 2.8336 18 6 5.8916 -8.0558 3.1506 19 6 4.6776 -8.1399 2.4922 20 35 3.4556 -9.5165 2.9250 21 6 4.3624 -7.2141 1.5179 22 6 5.2532 -6.1991 1.1960 23 6 4.8515 -5.2273 0.1149 24 1 -0.4850 0.8400 -0.0004 25 1 3.8752 -0.6805 -0.8888 26 1 3.8745 -0.6801 0.8912 27 1 3.3695 -3.3127 0.0021 28 1 7.5058 -5.0775 -0.5755 29 1 7.7867 -3.4599 0.1217 30 1 7.3744 -4.2521 2.3565 31 1 8.4639 -5.4396 1.6090 32 1 7.7225 -6.9823 3.3481 33 1 6.1466 -8.7796 3.9106 34 1 3.4153 -7.2791 1.0031 35 1 3.8386 -4.8722 0.3046 36 1 4.8850 -5.7280 -0.8527 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355676988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:09 Heat of formation + Delta-G solvation = -17.260924 kcal Electronic energy + Delta-G solvation = -20675.657958 eV Core-core repulsion = 17398.040883 eV Total energy + Delta-G solvation = -3277.617075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.67902 -40.30456 -37.27829 -36.23193 -34.66179 -33.96038 -32.91508 -31.76467 -30.00918 -29.34454 -26.82309 -24.88195 -23.77226 -23.34458 -22.08736 -20.62603 -19.32886 -18.42454 -17.82133 -17.06871 -16.98411 -16.37275 -16.22259 -15.86324 -15.60765 -15.19038 -15.00019 -14.59171 -14.48722 -14.20599 -14.10460 -13.69479 -13.37190 -13.26440 -13.03771 -12.82133 -12.67471 -12.22257 -11.92002 -11.82749 -11.64174 -11.49719 -11.32224 -11.23265 -10.91200 -10.19217 -9.87886 -9.49705 -9.48792 -8.39265 -6.46335 0.05753 0.24482 0.63058 1.34347 1.35981 1.49250 1.67166 2.13183 2.29460 2.51709 2.96382 3.06337 3.48735 3.68634 3.84317 3.99574 4.13921 4.21148 4.28922 4.42822 4.53787 4.62758 4.68475 4.78828 4.83709 4.88957 5.04674 5.07503 5.15425 5.21792 5.24663 5.46641 5.49727 5.51930 5.79172 5.92558 6.18538 6.54807 7.04242 7.18724 7.58315 8.75471 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.003057 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.652800 B = 9155.703186 C =10750.671089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.029 3.971 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.252 3.748 10 N -0.724 5.724 11 C 0.702 3.298 12 O -0.637 6.637 13 N -0.629 5.629 14 C 0.124 3.876 15 C -0.093 4.093 16 C -0.059 4.059 17 C -0.110 4.110 18 C -0.093 4.093 19 C -0.103 4.103 20 Br -0.052 7.052 21 C -0.091 4.091 22 C -0.097 4.097 23 C 0.150 3.850 24 H 0.273 0.727 25 H 0.011 0.989 26 H 0.010 0.990 27 H 0.402 0.598 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.159 0.841 33 H 0.150 0.850 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.344 -22.964 6.131 27.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.172 4.172 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.585 4.585 8 H 0.076 0.924 9 C 0.127 3.873 10 N -0.379 5.379 11 C 0.403 3.597 12 O -0.519 6.519 13 N -0.366 5.366 14 C 0.002 3.998 15 C -0.130 4.130 16 C -0.060 4.060 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.183 4.183 20 Br 0.033 6.967 21 C -0.111 4.111 22 C -0.099 4.099 23 C 0.027 3.973 24 H 0.082 0.918 25 H 0.029 0.971 26 H 0.028 0.972 27 H 0.239 0.761 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.176 0.824 33 H 0.168 0.832 34 H 0.158 0.842 35 H 0.106 0.894 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 14.257 -22.674 6.238 27.500 hybrid contribution -0.419 0.824 -0.116 0.931 sum 13.838 -21.850 6.122 26.578 Atomic orbital electron populations 1.69978 1.07678 1.28636 1.50637 1.25567 0.95521 1.02609 0.93495 0.85856 0.79257 0.79263 0.79515 1.18912 1.19782 1.18448 1.21255 0.89844 0.94572 1.52781 0.92413 1.18962 0.93086 0.79664 0.95542 1.45302 1.04714 1.09987 1.77878 1.16014 0.82757 0.83127 0.77784 1.90821 1.56138 1.44427 1.60498 1.47204 1.08584 1.03181 1.77676 1.21748 0.78982 1.01436 0.97634 1.20981 0.99138 0.95716 0.97198 1.19839 0.94368 0.96275 0.95514 1.21463 1.00842 0.93549 0.97030 1.21299 0.91782 0.99018 0.99108 1.21796 0.96589 0.97626 1.02242 1.96727 1.59149 1.47326 1.93450 1.21100 0.99971 0.93329 0.96673 1.19787 0.94781 0.96641 0.98671 1.20536 0.93241 0.85326 0.98150 0.91818 0.97112 0.97221 0.76120 0.88702 0.89714 0.90913 0.85993 0.82373 0.83202 0.84174 0.89399 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.72 13.96 21.45 0.30 -55.42 16 2 C 0.03 1.62 5.47 84.66 0.46 2.08 16 3 Si 0.94 44.29 27.47 68.60 1.88 46.17 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.26 -12.21 6.54 99.48 0.65 -11.56 16 7 C -0.55 -30.49 9.83 25.60 0.25 -30.24 16 8 H 0.06 3.38 7.84 -2.91 -0.02 3.36 16 9 C 0.25 12.63 4.50 85.63 0.39 13.01 16 10 N -0.72 -30.30 5.46 -482.30 -2.63 -32.93 16 11 C 0.70 27.69 8.32 179.06 1.49 29.18 16 12 O -0.64 -29.83 15.84 -3.99 -0.06 -29.90 16 13 N -0.63 -17.93 2.93 -841.11 -2.46 -20.39 16 14 C 0.12 2.72 6.47 86.33 0.56 3.28 16 15 C -0.09 -1.58 5.88 29.91 0.18 -1.40 16 16 C -0.06 -1.09 5.76 -19.85 -0.11 -1.21 16 17 C -0.11 -1.63 9.59 22.37 0.21 -1.41 16 18 C -0.09 -1.45 9.79 22.21 0.22 -1.23 16 19 C -0.10 -1.92 6.22 22.25 0.14 -1.78 16 20 Br -0.05 -0.92 33.71 -20.37 -0.69 -1.61 16 21 C -0.09 -1.78 9.37 22.37 0.21 -1.57 16 22 C -0.10 -2.00 5.82 -19.82 -0.12 -2.11 16 23 C 0.15 3.40 6.16 85.64 0.53 3.92 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 26 H 0.01 0.52 7.20 -2.39 -0.02 0.50 16 27 H 0.40 14.93 5.91 -92.71 -0.55 14.38 16 28 H 0.09 1.60 8.14 -2.38 -0.02 1.59 16 29 H 0.08 2.17 7.07 -2.39 -0.02 2.15 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.12 1.24 8.11 -2.39 -0.02 1.22 16 32 H 0.16 1.42 8.05 -2.91 -0.02 1.39 16 33 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.14 2.51 8.05 -2.91 -0.02 2.49 16 35 H 0.09 2.11 5.81 -2.39 -0.01 2.09 16 36 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -70.17 319.71 1.25 -68.92 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.51 Total: 14.65 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.40 Total: 10.51 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -4.79 Total: -108.74 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.06 Total: -29.90 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -0.69 Total: -1.61 kcal Total: -70.17 1.25 -68.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355676988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.654 kcal (2) G-P(sol) polarization free energy of solvation -70.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds