Wall clock time and date at job start Tue Mar 31 2020 21:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.39677 * 111.00240 * 172.60916 * 14 13 12 16 16 C 1.38943 * 120.06541 * 304.30047 * 15 14 13 17 17 C 1.38093 * 119.94233 * 179.97438 * 16 15 14 18 18 C 1.38285 * 120.08420 * 359.97438 * 17 16 15 19 19 C 1.38359 * 120.14221 * 0.02562 * 18 17 16 20 20 Br 1.89101 * 119.97382 * 179.97438 * 19 18 17 21 21 C 1.38217 * 120.05418 * 359.74341 * 19 18 17 22 22 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 23 23 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 24 24 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 26 26 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 27 27 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 28 28 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 29 29 H 1.07997 * 120.02680 * 359.97438 * 16 15 14 30 30 H 1.08002 * 119.95240 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.93111 * 179.97438 * 18 17 16 32 32 H 1.07991 * 120.04776 * 180.25232 * 21 19 18 33 33 H 1.08994 * 109.49159 * 303.15220 * 22 14 13 34 34 H 1.08999 * 109.51460 * 183.07675 * 22 14 13 35 35 H 1.08999 * 109.63197 * 350.89564 * 23 11 9 36 36 H 1.09008 * 109.62635 * 111.48013 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7578 -6.9789 1.5194 16 6 5.1246 -7.2283 1.5330 17 6 5.6377 -8.2114 2.3558 18 6 4.7931 -8.9474 3.1665 19 6 3.4315 -8.7019 3.1558 20 35 2.2808 -9.7117 4.2658 21 6 2.9122 -7.7161 2.3380 22 6 1.7771 -5.8907 0.8322 23 6 1.2249 -4.9226 -0.2195 24 1 -0.4850 0.8400 0.0004 25 1 3.7736 -3.9711 -1.0920 26 1 3.8007 -2.6840 0.1423 27 1 3.6077 -4.3397 1.9417 28 1 4.9637 -4.8053 0.8859 29 1 5.7850 -6.6537 0.9005 30 1 6.7001 -8.4057 2.3662 31 1 5.1970 -9.7159 3.8088 32 1 1.8499 -7.5219 2.3328 33 1 1.5327 -5.5231 1.8288 34 1 1.3329 -6.8757 0.6888 35 1 0.1612 -4.7606 -0.0453 36 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357020192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:53 Heat of formation + Delta-G solvation = 13.555320 kcal Electronic energy + Delta-G solvation = -20934.066070 eV Core-core repulsion = 17657.785288 eV Total energy + Delta-G solvation = -3276.280782 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35048 -38.26872 -36.47114 -33.68985 -32.57437 -32.45710 -30.93981 -29.98812 -29.10072 -26.85414 -25.67383 -23.86976 -22.22310 -21.57548 -20.74126 -18.94770 -17.72609 -16.54310 -15.95007 -15.73898 -15.36488 -14.74650 -14.54633 -14.38801 -14.14056 -13.91035 -13.71407 -13.65524 -13.04753 -12.59203 -11.93324 -11.83895 -11.58661 -11.57441 -11.29212 -11.08017 -10.96440 -10.90705 -10.85677 -10.68617 -10.43426 -10.29597 -10.09263 -9.72182 -8.94031 -8.91471 -7.91176 -7.66959 -7.31927 -6.26335 -4.72051 0.98484 1.17665 1.47505 3.09588 3.16756 3.19541 3.39941 3.80567 4.03399 4.44473 4.50118 4.64479 4.87950 5.01112 5.09608 5.19545 5.28437 5.35703 5.49824 5.59086 5.59849 5.70085 5.71098 5.86511 5.93552 6.05109 6.20251 6.22314 6.31682 6.40898 6.49273 6.56342 7.01929 7.21966 7.38437 7.48938 8.03953 8.26547 8.95343 9.34206 10.49888 10.68387 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.002767 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.498847 B =10117.926627 C =10693.851477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.559 3.441 10 O -0.577 6.577 11 N -0.645 5.645 12 C 0.127 3.873 13 C 0.044 3.956 14 N -0.485 5.485 15 C 0.130 3.870 16 C -0.130 4.130 17 C -0.089 4.089 18 C -0.128 4.128 19 C -0.061 4.061 20 Br -0.058 7.058 21 C -0.148 4.148 22 C 0.037 3.963 23 C 0.124 3.876 24 H 0.269 0.731 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.138 0.862 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.906 -17.863 6.546 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.459 6.459 11 N -0.384 5.384 12 C 0.002 3.998 13 C -0.082 4.082 14 N -0.199 5.199 15 C 0.030 3.970 16 C -0.151 4.151 17 C -0.109 4.109 18 C -0.149 4.149 19 C -0.141 4.141 20 Br 0.027 6.973 21 C -0.171 4.171 22 C -0.090 4.090 23 C -0.001 4.001 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.650 -18.139 6.465 21.539 hybrid contribution 0.628 1.019 0.441 1.276 sum 10.278 -17.120 6.906 21.129 Atomic orbital electron populations 1.70008 1.07096 1.27423 1.34991 1.25730 0.94628 1.00347 0.92542 0.86380 0.80192 0.81397 0.78883 1.19706 1.18814 1.20405 1.20952 0.93544 0.89196 1.54418 0.90923 1.18276 0.86934 0.82127 0.76129 1.90596 1.14361 1.85973 1.54973 1.48294 1.04613 1.05849 1.79674 1.21629 0.82914 0.98681 0.96612 1.22876 0.98530 0.87062 0.99745 1.59044 1.06516 1.05952 1.48380 1.19085 0.93223 0.94559 0.90101 1.20963 0.93715 0.99679 1.00736 1.20985 0.99671 0.94913 0.95297 1.20959 0.91301 1.01411 1.01247 1.21597 0.94055 0.98897 0.99503 1.96704 1.64124 1.71036 1.65403 1.21328 1.01088 0.98129 0.96570 1.22786 0.85481 1.00601 1.00165 1.21240 0.98313 0.84266 0.96237 0.92002 0.92844 0.88160 0.93269 0.89900 0.85023 0.85104 0.85407 0.84461 0.93201 0.89974 0.88988 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.54 11.84 55.55 0.66 -21.88 16 2 C 0.09 2.38 5.50 -17.37 -0.10 2.28 16 3 Si 0.91 19.54 29.56 -169.99 -5.02 14.51 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.54 -14.79 8.86 -35.63 -0.32 -15.11 16 8 H 0.07 1.78 5.74 -52.49 -0.30 1.47 16 9 C 0.56 15.51 7.63 -12.99 -0.10 15.41 16 10 O -0.58 -18.29 14.49 5.20 0.08 -18.21 16 11 N -0.65 -14.23 3.00 -173.84 -0.52 -14.75 16 12 C 0.13 2.24 6.50 -3.36 -0.02 2.22 16 13 C 0.04 0.65 5.44 -3.46 -0.02 0.63 16 14 N -0.48 -7.09 4.67 -170.53 -0.80 -7.89 16 15 C 0.13 1.71 5.64 -83.79 -0.47 1.24 16 16 C -0.13 -1.44 9.14 -39.37 -0.36 -1.80 16 17 C -0.09 -0.85 10.04 -39.62 -0.40 -1.25 16 18 C -0.13 -1.31 9.78 -39.52 -0.39 -1.70 16 19 C -0.06 -0.71 6.22 -39.54 -0.25 -0.96 16 20 Br -0.06 -0.63 33.70 -68.01 -2.29 -2.92 16 21 C -0.15 -1.91 8.57 -39.35 -0.34 -2.25 16 22 C 0.04 0.58 4.30 -3.70 -0.02 0.57 16 23 C 0.12 2.37 6.61 -3.60 -0.02 2.35 16 24 H 0.27 7.18 8.29 -40.82 -0.34 6.85 16 25 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 26 H 0.10 1.82 5.46 -51.93 -0.28 1.54 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.99 6.66 -51.93 -0.35 0.64 16 29 H 0.13 1.28 7.15 -52.49 -0.38 0.90 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.14 1.77 5.81 -52.49 -0.30 1.47 16 33 H 0.05 0.84 7.81 -51.93 -0.41 0.43 16 34 H 0.08 1.12 6.90 -51.93 -0.36 0.76 16 35 H 0.09 1.94 7.04 -51.93 -0.37 1.58 16 36 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 314.20 15.07 4.73 4.73 Total: -1.00 -32.64 314.20 -9.95 -42.59 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -3.99 Total: 2.19 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.79 Total: 1.63 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.66 Total: -44.52 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.08 Total: -18.21 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.64 -9.95 -42.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357020192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.141 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds