Wall clock time and date at job start Tue Mar 31 2020 21:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86795 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47234 * 89.99969 * 3 2 1 5 5 H 1.48504 * 109.46981 * 210.00088 * 3 2 1 6 6 H 1.48500 * 109.47228 * 329.99734 * 3 2 1 7 7 C 1.40044 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00321 * 359.97438 * 7 2 1 10 10 O 1.21687 * 119.99681 * 354.99925 * 9 7 2 11 11 N 1.34777 * 120.00313 * 175.00114 * 9 7 2 12 12 C 1.47077 * 120.87886 * 4.94953 * 11 9 7 13 13 C 1.53698 * 108.27700 * 128.75585 * 12 11 9 14 14 N 1.46898 * 109.25562 * 54.08236 * 13 12 11 15 15 C 1.39677 * 111.00240 * 172.60916 * 14 13 12 16 16 C 1.38943 * 120.06541 * 304.30047 * 15 14 13 17 17 C 1.38093 * 119.94233 * 179.97438 * 16 15 14 18 18 C 1.38285 * 120.08420 * 359.97438 * 17 16 15 19 19 C 1.38359 * 120.14221 * 0.02562 * 18 17 16 20 20 Br 1.89101 * 119.97382 * 179.97438 * 19 18 17 21 21 C 1.38217 * 120.05418 * 359.74341 * 19 18 17 22 22 C 1.46905 * 111.27013 * 296.75466 * 14 13 12 23 23 C 1.47076 * 120.88062 * 185.22734 * 11 9 7 24 24 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.62715 * 248.52147 * 12 11 9 26 26 H 1.09000 * 109.63081 * 9.10385 * 12 11 9 27 27 H 1.09001 * 109.64838 * 294.07883 * 13 12 11 28 28 H 1.09004 * 109.42089 * 173.94552 * 13 12 11 29 29 H 1.07997 * 120.02680 * 359.97438 * 16 15 14 30 30 H 1.08002 * 119.95240 * 179.97438 * 17 16 15 31 31 H 1.08001 * 119.93111 * 179.97438 * 18 17 16 32 32 H 1.07991 * 120.04776 * 180.25232 * 21 19 18 33 33 H 1.08994 * 109.49159 * 303.15220 * 22 14 13 34 34 H 1.08999 * 109.51460 * 183.07675 * 22 14 13 35 35 H 1.08999 * 109.63197 * 350.89564 * 23 11 9 36 36 H 1.09008 * 109.62635 * 111.48013 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 1.4000 5 1 3.5383 1.4400 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0617 -2.4825 0.0918 11 7 1.9449 -3.6455 -0.1028 12 6 3.4155 -3.6728 -0.1066 13 6 3.8814 -4.6906 0.9466 14 7 3.2360 -5.9847 0.6885 15 6 3.7578 -6.9789 1.5194 16 6 5.1246 -7.2283 1.5330 17 6 5.6377 -8.2114 2.3558 18 6 4.7931 -8.9474 3.1665 19 6 3.4315 -8.7019 3.1558 20 35 2.2808 -9.7117 4.2658 21 6 2.9122 -7.7161 2.3380 22 6 1.7771 -5.8907 0.8322 23 6 1.2249 -4.9226 -0.2195 24 1 -0.4850 0.8400 0.0004 25 1 3.7736 -3.9711 -1.0920 26 1 3.8007 -2.6840 0.1423 27 1 3.6077 -4.3397 1.9417 28 1 4.9637 -4.8053 0.8859 29 1 5.7850 -6.6537 0.9005 30 1 6.7001 -8.4057 2.3662 31 1 5.1970 -9.7159 3.8088 32 1 1.8499 -7.5219 2.3328 33 1 1.5327 -5.5231 1.8288 34 1 1.3329 -6.8757 0.6888 35 1 0.1612 -4.7606 -0.0453 36 1 1.3766 -5.3387 -1.2156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357020192.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:52 Heat of formation + Delta-G solvation = -7.620055 kcal Electronic energy + Delta-G solvation = -20934.984303 eV Core-core repulsion = 17657.785288 eV Total energy + Delta-G solvation = -3277.199015 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44909 -39.76230 -38.03137 -35.30003 -34.62987 -33.38308 -32.26475 -31.11760 -30.05118 -28.65578 -27.18274 -25.17597 -23.45472 -22.66586 -22.10101 -20.59353 -18.90903 -18.22874 -17.63851 -16.78963 -16.67544 -16.18338 -15.92952 -15.82222 -15.68294 -15.04125 -15.00513 -14.56722 -14.41463 -14.10717 -13.49527 -13.31053 -13.12225 -12.85650 -12.73815 -12.66334 -12.29403 -12.24408 -12.09879 -12.01471 -11.96133 -11.71886 -11.30229 -10.94127 -10.74333 -9.82726 -9.79001 -9.18402 -8.89303 -8.30057 -6.85235 0.12559 0.30020 0.61687 1.40900 1.41990 1.57412 2.22590 2.41714 2.46060 2.73383 2.87351 3.57080 3.77874 3.85120 3.95730 4.00369 4.17726 4.21651 4.28144 4.34579 4.41685 4.52905 4.59874 4.68671 4.74559 4.81323 4.87394 5.10719 5.12371 5.23276 5.37734 5.39715 5.62652 5.70429 5.88243 6.10842 6.18479 6.35949 6.87045 7.39026 8.44337 8.66023 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.022422 B = 0.002767 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.498847 B =10117.926627 C =10693.851477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.244 1.244 6 H -0.276 1.276 7 C -0.567 4.567 8 H 0.097 0.903 9 C 0.540 3.460 10 O -0.633 6.633 11 N -0.649 5.649 12 C 0.123 3.877 13 C 0.053 3.947 14 N -0.484 5.484 15 C 0.108 3.892 16 C -0.127 4.127 17 C -0.081 4.081 18 C -0.123 4.123 19 C -0.074 4.074 20 Br -0.056 7.056 21 C -0.163 4.163 22 C 0.054 3.946 23 C 0.123 3.877 24 H 0.274 0.726 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.122 0.878 29 H 0.151 0.849 30 H 0.167 0.833 31 H 0.149 0.851 32 H 0.126 0.874 33 H 0.031 0.969 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.756 -18.581 6.800 24.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.188 1.188 5 H -0.166 1.166 6 H -0.201 1.201 7 C -0.603 4.603 8 H 0.115 0.885 9 C 0.347 3.653 10 O -0.520 6.520 11 N -0.386 5.386 12 C -0.001 4.001 13 C -0.073 4.073 14 N -0.199 5.199 15 C 0.009 3.991 16 C -0.148 4.148 17 C -0.100 4.100 18 C -0.144 4.144 19 C -0.154 4.154 20 Br 0.029 6.971 21 C -0.185 4.185 22 C -0.074 4.074 23 C -0.001 4.001 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.049 0.951 28 H 0.139 0.861 29 H 0.168 0.832 30 H 0.185 0.815 31 H 0.167 0.833 32 H 0.144 0.856 33 H 0.049 0.951 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.564 -18.928 6.725 24.238 hybrid contribution -0.528 1.073 0.399 1.261 sum 13.036 -17.855 7.124 23.227 Atomic orbital electron populations 1.70195 1.09652 1.28926 1.36550 1.27017 0.95480 1.05046 0.91175 0.85040 0.78994 0.75063 0.79379 1.18761 1.16648 1.20087 1.21504 0.94917 0.89562 1.54356 0.88472 1.18711 0.86581 0.84144 0.75889 1.90543 1.16709 1.87326 1.57453 1.48158 1.06700 1.05349 1.78373 1.21829 0.79973 0.99647 0.98605 1.22784 1.00553 0.86492 0.97431 1.59076 1.05200 1.06150 1.49453 1.19167 0.94380 0.94564 0.91001 1.21239 0.92752 0.99974 1.00816 1.21394 1.01340 0.93492 0.93741 1.21329 0.90606 1.01448 1.01018 1.21746 0.95009 0.99013 0.99673 1.96703 1.64412 1.70780 1.65188 1.21314 1.00754 0.98998 0.97477 1.22522 0.87025 1.00259 0.97634 1.21303 0.96690 0.83974 0.98150 0.91650 0.91186 0.88747 0.95088 0.86054 0.83181 0.81511 0.83307 0.85578 0.95081 0.87970 0.92103 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.33 11.84 21.83 0.26 -50.07 16 2 C 0.03 1.53 5.50 85.30 0.47 2.00 16 3 Si 1.00 40.01 29.56 68.60 2.03 42.03 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 5 H -0.24 -8.89 7.11 99.48 0.71 -8.18 16 6 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 7 C -0.57 -31.34 8.86 24.83 0.22 -31.12 16 8 H 0.10 4.69 5.74 -2.91 -0.02 4.68 16 9 C 0.54 31.28 7.63 86.36 0.66 31.94 16 10 O -0.63 -42.68 14.49 -4.31 -0.06 -42.75 16 11 N -0.65 -29.38 3.00 -822.12 -2.47 -31.85 16 12 C 0.12 4.23 6.50 86.50 0.56 4.79 16 13 C 0.05 1.48 5.44 86.54 0.47 1.95 16 14 N -0.48 -13.49 4.67 -693.45 -3.24 -16.73 16 15 C 0.11 2.62 5.64 38.21 0.22 2.83 16 16 C -0.13 -2.34 9.14 22.40 0.20 -2.14 16 17 C -0.08 -1.18 10.04 22.25 0.22 -0.96 16 18 C -0.12 -2.11 9.78 22.31 0.22 -1.89 16 19 C -0.07 -1.62 6.22 22.29 0.14 -1.48 16 20 Br -0.06 -1.16 33.70 -20.37 -0.69 -1.84 16 21 C -0.16 -4.04 8.57 22.42 0.19 -3.84 16 22 C 0.05 1.71 4.30 86.38 0.37 2.08 16 23 C 0.12 4.88 6.61 86.35 0.57 5.45 16 24 H 0.27 15.17 8.29 -92.71 -0.77 14.40 16 25 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.09 3.34 5.46 -2.39 -0.01 3.32 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.12 2.45 6.66 -2.38 -0.02 2.43 16 29 H 0.15 2.18 7.15 -2.91 -0.02 2.16 16 30 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 31 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.13 3.30 5.81 -2.92 -0.02 3.29 16 33 H 0.03 1.10 7.81 -2.39 -0.02 1.08 16 34 H 0.10 2.82 6.90 -2.39 -0.02 2.80 16 35 H 0.06 2.78 7.04 -2.39 -0.02 2.76 16 36 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -75.21 314.20 1.46 -73.75 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.11 Total: 17.84 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 4.52 Total: 9.61 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -5.45 Total: -98.65 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.06 Total: -42.75 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 35 Polarization: -1.16 SS G_CDS: -0.69 Total: -1.84 kcal Total: -75.21 1.46 -73.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357020192.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.129 kcal (2) G-P(sol) polarization free energy of solvation -75.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds