Wall clock time and date at job start Tue Mar 31 2020 20:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54189 * 2 1 4 4 O 1.42099 * 110.54506 * 223.25160 * 2 1 3 5 5 N 1.65600 * 104.45193 * 111.62656 * 2 1 3 6 6 C 1.39670 * 119.99831 * 298.96522 * 5 2 1 7 7 C 1.38951 * 120.05977 * 313.63395 * 6 5 2 8 8 C 1.38092 * 119.97330 * 179.70611 * 7 6 5 9 9 C 1.38270 * 120.10093 * 0.54974 * 8 7 6 10 10 S 1.76202 * 119.94283 * 179.72422 * 9 8 7 11 11 O 1.42095 * 106.40291 * 131.84637 * 10 9 8 12 12 O 1.42109 * 106.39910 * 358.92453 * 10 9 8 13 13 N 1.65604 * 107.21761 * 245.38904 * 10 9 8 14 14 C 1.36929 * 119.99852 * 63.25711 * 13 10 9 15 15 H 1.07995 * 120.00744 * 5.08649 * 14 13 10 16 16 C 1.38817 * 119.99597 * 185.08680 * 14 13 10 17 17 N 1.31617 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00055 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47408 * 59.99907 * 18 16 14 20 20 H 1.48503 * 109.47308 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46794 * 299.99858 * 18 16 14 22 22 C 1.38498 * 120.11897 * 359.45253 * 9 8 7 23 23 F 1.35104 * 119.98410 * 180.29739 * 22 9 8 24 24 C 1.38342 * 120.02470 * 0.27233 * 22 9 8 25 25 H 1.09002 * 109.47214 * 313.41916 * 1 2 3 26 26 H 1.09001 * 109.47572 * 73.42763 * 1 2 3 27 27 H 1.09007 * 109.47125 * 193.42504 * 1 2 3 28 28 H 0.96992 * 119.99913 * 118.96157 * 5 2 1 29 29 H 1.07999 * 120.01510 * 359.97438 * 7 6 5 30 30 H 1.08003 * 119.94948 * 180.29345 * 8 7 6 31 31 H 0.96999 * 119.99142 * 242.97718 * 13 10 9 32 32 H 0.97003 * 120.00146 * 179.97438 * 17 16 14 33 33 H 1.08001 * 120.05199 * 179.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 1.8343 0.0897 2.6453 7 6 2.0020 1.4663 2.7327 8 6 1.6072 2.1383 3.8727 9 6 1.0556 1.4419 4.9322 10 16 0.5600 2.3027 6.3877 11 8 -0.7503 1.8479 6.6963 12 8 0.8773 3.6710 6.1721 13 7 1.5373 1.7847 7.6202 14 6 2.8855 2.0184 7.5693 15 1 3.3011 2.6110 6.7678 16 6 3.7183 1.4934 8.5480 17 7 3.2119 0.7715 9.5251 18 14 5.5575 1.8127 8.4791 19 1 5.8088 3.2750 8.5409 20 1 6.2190 1.1472 9.6302 21 1 6.1070 1.2691 7.2111 22 6 0.8866 0.0698 4.8494 23 9 0.3418 -0.6071 5.8840 24 6 1.2751 -0.6078 3.7076 25 1 -0.3634 0.7064 0.7464 26 1 -0.3634 0.2931 -0.9850 27 1 -0.3634 -0.9996 0.2386 28 1 2.7421 -1.4099 1.5620 29 1 2.4368 2.0110 1.9078 30 1 1.7334 3.2089 3.9384 31 1 1.1539 1.3193 8.3800 32 1 3.7938 0.4043 10.2088 33 1 1.1439 -1.6779 3.6427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359496011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:04 Heat of formation + Delta-G solvation = -152.521502 kcal Electronic energy + Delta-G solvation = -25341.930912 eV Core-core repulsion = 21151.070442 eV Total energy + Delta-G solvation = -4190.860470 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.76406 -39.38409 -37.47036 -36.37472 -36.02736 -35.12113 -34.75423 -34.67998 -31.10296 -30.64167 -29.87710 -29.24133 -24.65041 -23.08889 -22.89068 -19.91892 -18.71177 -18.41567 -18.19520 -18.11631 -17.14544 -16.76844 -16.42846 -16.07146 -15.95369 -15.35094 -15.25281 -14.66825 -14.33188 -14.09726 -13.76323 -13.73202 -13.60471 -13.39990 -13.20185 -12.85283 -12.51592 -12.31072 -12.09754 -11.96822 -11.59197 -11.40909 -11.36602 -11.14512 -11.03310 -10.90139 -10.76608 -10.67968 -10.41216 -10.05775 -10.00499 -8.92022 -8.63069 -8.39391 -6.63804 -4.01270 -0.24231 0.86295 1.25091 1.51464 2.15812 3.13632 3.15972 3.18813 3.31746 3.38255 3.80174 3.95918 4.28086 4.37259 4.39047 4.57746 4.66432 4.74104 4.82914 5.02369 5.06466 5.30186 5.33246 5.62771 5.77485 6.03283 6.06460 6.15753 6.31020 6.54580 6.92643 6.94151 7.33329 8.53548 8.64079 9.09893 10.50322 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.004022 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.747071 B = 6959.956939 C = 7682.167043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.669 4.669 2 S 2.610 3.390 3 O -0.944 6.944 4 O -0.954 6.954 5 N -1.057 6.057 6 C 0.194 3.806 7 C -0.189 4.189 8 C 0.019 3.981 9 C -0.698 4.698 10 S 2.580 3.420 11 O -0.998 6.998 12 O -0.970 6.970 13 N -0.934 5.934 14 C -0.260 4.260 15 H 0.108 0.892 16 C 0.032 3.968 17 N -0.861 5.861 18 Si 0.925 3.075 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.270 1.270 22 C 0.214 3.786 23 F -0.118 7.118 24 C -0.193 4.193 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.428 0.572 29 H 0.165 0.835 30 H 0.155 0.845 31 H 0.413 0.587 32 H 0.279 0.721 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 -4.430 -14.693 15.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.704 3.296 3 O -0.934 6.934 4 O -0.944 6.944 5 N -0.808 5.808 6 C 0.098 3.902 7 C -0.210 4.210 8 C -0.001 4.001 9 C -0.777 4.777 10 S 2.670 3.330 11 O -0.987 6.987 12 O -0.960 6.960 13 N -0.685 5.685 14 C -0.405 4.405 15 H 0.126 0.874 16 C -0.178 4.178 17 N -0.502 5.502 18 Si 0.751 3.249 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.195 1.195 22 C 0.193 3.807 23 F -0.096 7.096 24 C -0.216 4.216 25 H 0.153 0.847 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.266 0.734 29 H 0.182 0.818 30 H 0.172 0.828 31 H 0.249 0.751 32 H 0.089 0.911 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.717 -3.480 -15.564 16.178 hybrid contribution 0.669 -1.564 0.450 1.760 sum -2.048 -5.044 -15.114 16.065 Atomic orbital electron populations 1.30470 1.27113 1.12321 1.12051 1.05065 0.77943 0.74502 0.72116 1.93603 1.77064 1.37802 1.84904 1.93635 1.78271 1.61674 1.60806 1.53388 1.67339 1.39201 1.20877 1.17158 0.95154 0.91159 0.86743 1.22033 1.04404 0.93101 1.01497 1.20811 0.89039 1.00721 0.89499 1.32365 1.15841 1.04611 1.24841 1.08628 0.74596 0.76935 0.72808 1.93420 1.39617 1.82297 1.83367 1.93448 1.85160 1.31842 1.85556 1.51944 1.18351 1.71990 1.26165 1.19462 0.82161 1.26996 1.11856 0.87445 1.25408 1.00629 0.95636 0.96100 1.69696 1.37130 1.31528 1.11852 0.86001 0.81415 0.79262 0.78237 1.19225 1.20557 1.19542 1.16771 0.91417 0.88515 0.84017 1.91612 1.82186 1.79703 1.56061 1.21023 1.05435 1.01123 0.94044 0.84740 0.84844 0.84938 0.73397 0.81797 0.82764 0.75113 0.91123 0.83994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.98 10.74 101.05 1.09 -2.89 16 2 S 2.61 23.06 6.00 -107.50 -0.64 22.41 16 3 O -0.94 -11.36 15.19 -57.54 -0.87 -12.23 16 4 O -0.95 -10.82 18.08 -57.54 -1.04 -11.86 16 5 N -1.06 -9.77 5.67 32.41 0.18 -9.59 16 6 C 0.19 2.45 6.01 -83.80 -0.50 1.94 16 7 C -0.19 -2.66 9.24 -39.37 -0.36 -3.03 16 8 C 0.02 0.31 9.54 -39.62 -0.38 -0.07 16 9 C -0.70 -13.21 5.80 -39.47 -0.23 -13.44 16 10 S 2.58 56.81 5.35 -107.50 -0.58 56.24 16 11 O -1.00 -23.82 17.38 -57.17 -0.99 -24.81 16 12 O -0.97 -22.72 16.70 -57.17 -0.95 -23.67 16 13 N -0.93 -22.05 5.74 31.49 0.18 -21.87 16 14 C -0.26 -6.31 9.63 -15.06 -0.15 -6.46 16 15 H 0.11 2.46 7.82 -52.49 -0.41 2.05 16 16 C 0.03 0.79 5.50 -17.43 -0.10 0.69 16 17 N -0.86 -21.78 13.06 55.49 0.72 -21.06 16 18 Si 0.93 18.74 29.55 -169.99 -5.02 13.72 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 C 0.21 3.81 7.20 -39.45 -0.28 3.52 16 23 F -0.12 -2.27 16.24 2.25 0.04 -2.23 16 24 C -0.19 -2.67 9.95 -39.32 -0.39 -3.06 16 25 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 26 H 0.13 0.55 8.14 -51.92 -0.42 0.12 16 27 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.43 3.05 8.92 -34.47 -0.31 2.75 16 29 H 0.16 2.14 5.65 -52.49 -0.30 1.85 16 30 H 0.15 2.37 7.33 -52.48 -0.38 1.99 16 31 H 0.41 9.95 8.04 -34.46 -0.28 9.67 16 32 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 33 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -33.74 322.45 -7.93 -41.67 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -2.50 Total: 11.22 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -1.31 Total: -22.79 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 1.09 Total: -52.52 kcal Atomic # 8 Polarization: -68.71 SS G_CDS: -3.86 Total: -72.58 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.04 Total: -2.23 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.02 Total: 13.72 kcal Atomic # 16 Polarization: 79.87 SS G_CDS: -1.22 Total: 78.65 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.74 -7.93 -41.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359496011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.856 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds