Wall clock time and date at job start Tue Mar 31 2020 20:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42105 * 110.54189 * 2 1 4 4 O 1.42099 * 110.54506 * 223.25160 * 2 1 3 5 5 N 1.65600 * 104.45193 * 111.62656 * 2 1 3 6 6 C 1.39670 * 119.99831 * 298.96522 * 5 2 1 7 7 C 1.38951 * 120.05977 * 313.63395 * 6 5 2 8 8 C 1.38092 * 119.97330 * 179.70611 * 7 6 5 9 9 C 1.38270 * 120.10093 * 0.54974 * 8 7 6 10 10 S 1.76202 * 119.94283 * 179.72422 * 9 8 7 11 11 O 1.42095 * 106.40291 * 131.84637 * 10 9 8 12 12 O 1.42109 * 106.39910 * 358.92453 * 10 9 8 13 13 N 1.65604 * 107.21761 * 245.38904 * 10 9 8 14 14 C 1.36929 * 119.99852 * 63.25711 * 13 10 9 15 15 H 1.07995 * 120.00744 * 5.08649 * 14 13 10 16 16 C 1.38817 * 119.99597 * 185.08680 * 14 13 10 17 17 N 1.31617 * 120.00101 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00055 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47408 * 59.99907 * 18 16 14 20 20 H 1.48503 * 109.47308 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46794 * 299.99858 * 18 16 14 22 22 C 1.38498 * 120.11897 * 359.45253 * 9 8 7 23 23 F 1.35104 * 119.98410 * 180.29739 * 22 9 8 24 24 C 1.38342 * 120.02470 * 0.27233 * 22 9 8 25 25 H 1.09002 * 109.47214 * 313.41916 * 1 2 3 26 26 H 1.09001 * 109.47572 * 73.42763 * 1 2 3 27 27 H 1.09007 * 109.47125 * 193.42504 * 1 2 3 28 28 H 0.96992 * 119.99913 * 118.96157 * 5 2 1 29 29 H 1.07999 * 120.01510 * 359.97438 * 7 6 5 30 30 H 1.08003 * 119.94948 * 180.29345 * 8 7 6 31 31 H 0.96999 * 119.99142 * 242.97718 * 13 10 9 32 32 H 0.97003 * 120.00146 * 179.97438 * 17 16 14 33 33 H 1.08001 * 120.05199 * 179.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 1.8343 0.0897 2.6453 7 6 2.0020 1.4663 2.7327 8 6 1.6072 2.1383 3.8727 9 6 1.0556 1.4419 4.9322 10 16 0.5600 2.3027 6.3877 11 8 -0.7503 1.8479 6.6963 12 8 0.8773 3.6710 6.1721 13 7 1.5373 1.7847 7.6202 14 6 2.8855 2.0184 7.5693 15 1 3.3011 2.6110 6.7678 16 6 3.7183 1.4934 8.5480 17 7 3.2119 0.7715 9.5251 18 14 5.5575 1.8127 8.4791 19 1 5.8088 3.2750 8.5409 20 1 6.2190 1.1472 9.6302 21 1 6.1070 1.2691 7.2111 22 6 0.8866 0.0698 4.8494 23 9 0.3418 -0.6071 5.8840 24 6 1.2751 -0.6078 3.7076 25 1 -0.3634 0.7064 0.7464 26 1 -0.3634 0.2931 -0.9850 27 1 -0.3634 -0.9996 0.2386 28 1 2.7421 -1.4099 1.5620 29 1 2.4368 2.0110 1.9078 30 1 1.7334 3.2089 3.9384 31 1 1.1539 1.3193 8.3800 32 1 3.7938 0.4043 10.2088 33 1 1.1439 -1.6779 3.6427 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359496011.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:03 Heat of formation + Delta-G solvation = -181.405988 kcal Electronic energy + Delta-G solvation = -25343.183437 eV Core-core repulsion = 21151.070442 eV Total energy + Delta-G solvation = -4192.112995 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 338.028 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -50.21523 -40.57357 -38.29482 -37.99357 -37.18971 -36.69856 -36.48870 -36.16769 -32.86091 -31.88647 -30.48836 -30.36971 -26.44086 -24.34279 -24.16242 -20.76688 -20.42348 -20.06392 -19.49619 -19.01114 -18.70571 -18.13553 -17.67686 -17.22295 -17.03915 -16.79901 -16.43785 -16.24060 -16.05743 -15.51952 -15.23228 -14.81664 -14.49336 -14.14518 -14.08681 -13.91619 -13.81696 -13.34698 -13.27423 -13.24143 -13.10596 -12.98183 -12.97086 -12.83040 -12.65964 -12.37266 -12.17117 -12.11353 -11.79471 -11.77967 -11.66761 -10.20742 -10.10587 -9.86384 -8.34032 -5.88842 -0.98569 -0.45050 -0.23028 0.00486 1.38149 1.50226 1.53940 1.59941 2.06838 2.30165 2.63976 2.64980 2.88080 3.03006 3.11526 3.21485 3.46769 3.61374 3.82671 3.97394 4.03922 4.15348 4.23064 4.50927 4.75992 4.85613 4.89485 4.92599 5.07014 5.11104 5.56877 5.59373 5.85255 6.72909 6.93708 7.31096 8.83317 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.004022 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.747071 B = 6959.956939 C = 7682.167043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.618 3.382 3 O -0.978 6.978 4 O -0.977 6.977 5 N -1.049 6.049 6 C 0.225 3.775 7 C -0.185 4.185 8 C 0.017 3.983 9 C -0.724 4.724 10 S 2.648 3.352 11 O -1.012 7.012 12 O -0.986 6.986 13 N -0.965 5.965 14 C -0.307 4.307 15 H 0.110 0.890 16 C -0.012 4.012 17 N -0.918 5.918 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.263 1.263 22 C 0.195 3.805 23 F -0.132 7.132 24 C -0.179 4.179 25 H 0.139 0.861 26 H 0.157 0.843 27 H 0.155 0.845 28 H 0.441 0.559 29 H 0.180 0.820 30 H 0.161 0.839 31 H 0.407 0.593 32 H 0.274 0.726 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.053 -5.291 -18.270 19.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.715 3.285 3 O -0.968 6.968 4 O -0.968 6.968 5 N -0.800 5.800 6 C 0.127 3.873 7 C -0.206 4.206 8 C -0.003 4.003 9 C -0.811 4.811 10 S 2.741 3.259 11 O -1.001 7.001 12 O -0.977 6.977 13 N -0.717 5.717 14 C -0.443 4.443 15 H 0.128 0.872 16 C -0.215 4.215 17 N -0.560 5.560 18 Si 0.805 3.195 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.187 1.187 22 C 0.173 3.827 23 F -0.110 7.110 24 C -0.202 4.202 25 H 0.157 0.843 26 H 0.176 0.824 27 H 0.174 0.826 28 H 0.281 0.719 29 H 0.197 0.803 30 H 0.179 0.821 31 H 0.242 0.758 32 H 0.084 0.916 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -3.139 -4.329 -19.038 19.775 hybrid contribution 0.495 -1.286 1.032 1.722 sum -2.644 -5.615 -18.006 19.046 Atomic orbital electron populations 1.30363 1.22437 1.14118 1.13921 1.04730 0.79338 0.73136 0.71281 1.93558 1.78985 1.39242 1.85063 1.93612 1.79866 1.62156 1.61168 1.53381 1.67465 1.39395 1.19732 1.17142 0.92421 0.90696 0.87047 1.22196 1.03687 0.93922 1.00833 1.20936 0.88564 1.01198 0.89598 1.31427 1.20416 1.05353 1.23884 1.04219 0.72968 0.75471 0.73269 1.93439 1.39505 1.82778 1.84403 1.93456 1.85263 1.32734 1.86230 1.51369 1.18053 1.73477 1.28823 1.19525 0.82123 1.29847 1.12827 0.87195 1.26046 1.04045 0.95767 0.95663 1.69795 1.37902 1.34818 1.13484 0.85159 0.77220 0.78930 0.78212 1.19079 1.20678 1.18746 1.17096 0.92328 0.88216 0.85037 1.91585 1.82579 1.79830 1.56987 1.21300 1.03692 1.02882 0.92327 0.84255 0.82437 0.82649 0.71872 0.80318 0.82104 0.75837 0.91631 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.39 10.74 113.37 1.22 -3.18 16 2 S 2.62 36.45 6.00 -56.49 -0.34 36.11 16 3 O -0.98 -20.58 15.19 -127.65 -1.94 -22.52 16 4 O -0.98 -19.09 18.08 -127.65 -2.31 -21.39 16 5 N -1.05 -14.86 5.67 -51.39 -0.29 -15.15 16 6 C 0.22 4.73 6.01 38.21 0.23 4.96 16 7 C -0.18 -4.59 9.24 22.41 0.21 -4.38 16 8 C 0.02 0.52 9.54 22.24 0.21 0.73 16 9 C -0.72 -26.46 5.80 22.34 0.13 -26.33 16 10 S 2.65 116.84 5.35 -56.49 -0.30 116.53 16 11 O -1.01 -48.04 17.38 -128.00 -2.23 -50.27 16 12 O -0.99 -46.02 16.70 -128.00 -2.14 -48.16 16 13 N -0.97 -47.34 5.74 -54.27 -0.31 -47.66 16 14 C -0.31 -15.49 9.63 84.04 0.81 -14.68 16 15 H 0.11 5.23 7.82 -2.91 -0.02 5.20 16 16 C -0.01 -0.61 5.50 84.86 0.47 -0.14 16 17 N -0.92 -49.32 13.06 21.65 0.28 -49.04 16 18 Si 0.98 39.83 29.55 68.60 2.03 41.86 16 19 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 20 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 22 C 0.19 6.54 7.20 22.36 0.16 6.70 16 23 F -0.13 -4.97 16.24 44.97 0.73 -4.24 16 24 C -0.18 -4.24 9.95 22.44 0.22 -4.02 16 25 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.16 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.16 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.44 4.35 8.92 -96.76 -0.86 3.48 16 29 H 0.18 4.05 5.65 -2.91 -0.02 4.04 16 30 H 0.16 4.67 7.33 -2.91 -0.02 4.65 16 31 H 0.41 20.77 8.04 -96.75 -0.78 19.99 16 32 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.18 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -75.25 322.45 -3.59 -78.84 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: -0.43 Total: 25.42 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 3.66 Total: -40.33 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -0.32 Total: -111.85 kcal Atomic # 8 Polarization: -133.73 SS G_CDS: -8.61 Total: -142.34 kcal Atomic # 9 Polarization: -4.97 SS G_CDS: 0.73 Total: -4.24 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Atomic # 16 Polarization: 153.28 SS G_CDS: -0.64 Total: 152.64 kcal Total: -75.25 -3.59 -78.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359496011.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.570 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds