Wall clock time and date at job start Tue Mar 31 2020 21:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47108 * 240.00378 * 3 2 1 5 5 H 1.48506 * 109.46704 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47194 * 119.99588 * 3 2 1 7 7 C 1.37880 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00521 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99642 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47010 * 184.80270 * 9 7 2 11 11 C 1.47188 * 111.00076 * 301.83980 * 10 9 7 12 12 C 1.52982 * 108.73418 * 192.36936 * 11 10 9 13 13 N 1.46015 * 110.03678 * 309.70748 * 12 11 10 14 14 C 1.33569 * 122.88761 * 18.25539 * 13 12 11 15 15 O 1.21277 * 118.52258 * 178.23213 * 14 13 12 16 16 C 1.46905 * 111.00309 * 64.73323 * 10 9 7 17 17 H 1.09004 * 109.37911 * 306.38616 * 16 10 9 18 18 C 1.50693 * 109.38339 * 66.17651 * 16 10 9 19 19 C 1.38238 * 120.00815 * 25.21303 * 18 16 10 20 20 C 1.38224 * 120.00809 * 179.97438 * 19 18 16 21 21 C 1.38255 * 120.02377 * 359.97438 * 20 19 18 22 22 C 1.38205 * 120.00995 * 359.97438 * 21 20 19 23 23 C 1.38308 * 120.00452 * 205.45830 * 18 16 10 24 24 Br 1.89109 * 120.00999 * 0.02562 * 23 18 16 25 25 H 0.96998 * 120.00185 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46781 * 64.80139 * 9 7 2 27 27 H 1.09004 * 109.47007 * 304.80184 * 9 7 2 28 28 H 1.09007 * 109.59214 * 312.14316 * 11 10 9 29 29 H 1.09000 * 109.59374 * 72.44218 * 11 10 9 30 30 H 1.09000 * 109.37622 * 69.88098 * 12 11 10 31 31 H 1.08995 * 109.37897 * 189.53528 * 12 11 10 32 32 H 0.97006 * 118.53339 * 198.15963 * 13 12 11 33 33 H 1.07993 * 119.99511 * 359.97438 * 19 18 16 34 34 H 1.08004 * 119.98821 * 180.02562 * 20 19 18 35 35 H 1.08004 * 119.99947 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.00521 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2015 -3.6132 0.1171 11 6 3.1780 -3.5909 -0.9839 12 6 3.9361 -4.9196 -0.9953 13 7 4.4414 -5.2188 0.3415 14 6 3.9671 -4.6329 1.4441 15 8 4.4226 -4.9647 2.5180 16 6 2.8960 -3.5796 1.4112 17 1 3.3490 -2.5983 1.5531 18 6 1.9057 -3.8382 2.5172 19 6 0.7490 -4.5491 2.2572 20 6 -0.1591 -4.7868 3.2718 21 6 0.0892 -4.3142 4.5471 22 6 1.2459 -3.6043 4.8083 23 6 2.1516 -3.3600 3.7915 24 35 3.7301 -2.3809 4.1461 25 1 -0.4850 0.8400 -0.0004 26 1 0.6909 -2.5952 -0.9295 27 1 0.5611 -2.5204 0.8442 28 1 2.6568 -3.4592 -1.9322 29 1 3.8784 -2.7691 -0.8346 30 1 3.2644 -5.7164 -1.3148 31 1 4.7722 -4.8530 -1.6914 32 1 5.1520 -5.8729 0.4327 33 1 0.5548 -4.9187 1.2613 34 1 -1.0626 -5.3425 3.0684 35 1 -0.6204 -4.5005 5.3397 36 1 1.4395 -3.2349 5.8044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378356859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:08 Heat of formation + Delta-G solvation = 9.996323 kcal Electronic energy + Delta-G solvation = -22147.604310 eV Core-core repulsion = 18871.169198 eV Total energy + Delta-G solvation = -3276.435112 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.32366 -38.45313 -36.75944 -34.55302 -32.63409 -31.91149 -31.05812 -28.95679 -28.53017 -27.42612 -25.07362 -23.39431 -22.06737 -21.22657 -21.09323 -18.67598 -17.16127 -16.56222 -16.33368 -15.93460 -15.37162 -14.98213 -14.75043 -14.33673 -13.81293 -13.47583 -13.40336 -13.13458 -12.94990 -12.51516 -12.25581 -11.98929 -11.50964 -11.37148 -11.09821 -10.98326 -10.75404 -10.71094 -10.43341 -10.25393 -10.10029 -9.83967 -9.65571 -9.35327 -8.76243 -8.53665 -8.33154 -8.13160 -7.54694 -6.11767 -4.20735 1.55414 1.71909 2.17919 3.05023 3.25131 3.30395 3.33623 3.61239 4.09376 4.35152 4.55899 5.05913 5.09652 5.20113 5.25324 5.30530 5.34500 5.60222 5.62583 5.69149 5.85372 6.03821 6.13175 6.21650 6.37189 6.42155 6.56987 6.77388 6.80528 6.97097 7.11355 7.24291 7.39208 7.59270 7.66601 7.80723 7.93240 8.12952 8.59818 8.85651 9.46955 10.94223 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.007206 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.130426 B = 3884.833783 C = 4519.409053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.182 3.818 10 N -0.528 5.528 11 C 0.042 3.958 12 C 0.113 3.887 13 N -0.720 5.720 14 C 0.530 3.470 15 O -0.544 6.544 16 C 0.103 3.897 17 H 0.107 0.893 18 C -0.020 4.020 19 C -0.080 4.080 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.103 4.103 23 C -0.060 4.060 24 Br -0.052 7.052 25 H 0.264 0.736 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.393 0.607 33 H 0.141 0.859 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.979 -9.195 3.706 10.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.595 4.595 8 H 0.073 0.927 9 C 0.057 3.943 10 N -0.254 5.254 11 C -0.087 4.087 12 C -0.012 4.012 13 N -0.373 5.373 14 C 0.316 3.684 15 O -0.421 6.421 16 C -0.009 4.009 17 H 0.124 0.876 18 C -0.023 4.023 19 C -0.099 4.099 20 C -0.135 4.135 21 C -0.139 4.139 22 C -0.123 4.123 23 C -0.140 4.140 24 Br 0.034 6.966 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.228 0.772 33 H 0.159 0.841 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.196 -9.149 4.344 10.963 hybrid contribution 0.764 1.483 -0.191 1.680 sum 4.960 -7.666 4.152 10.030 Atomic orbital electron populations 1.69907 1.05961 1.27100 1.49262 1.24868 0.94697 0.98996 0.94482 0.86785 0.79900 0.83436 0.78822 1.20195 1.21092 1.19968 1.21578 0.93086 0.91960 1.52918 0.92655 1.19927 0.90757 0.84959 0.98620 1.63066 1.15720 1.47632 0.98952 1.22288 0.95149 0.94349 0.96872 1.21616 0.97900 0.98673 0.83024 1.45509 1.40339 1.44368 1.07090 1.20123 0.82766 0.81928 0.83557 1.90729 1.59712 1.63082 1.28529 1.20574 0.91375 0.98057 0.90918 0.87590 1.19091 0.95407 0.96280 0.91527 1.21125 0.92394 0.96528 0.99876 1.21202 0.99284 1.00006 0.93014 1.21030 0.96816 0.98842 0.97177 1.20929 0.93934 0.99388 0.98050 1.21581 0.94263 1.02273 0.95907 1.96605 1.33038 1.71816 1.95128 0.92631 0.94652 0.93716 0.88859 0.93218 0.91454 0.91045 0.77183 0.84082 0.85828 0.85820 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.87 13.29 55.43 0.74 -24.14 16 2 C 0.07 1.97 5.46 -17.82 -0.10 1.88 16 3 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.56 -14.30 7.59 -34.44 -0.26 -14.56 16 8 H 0.06 1.42 5.90 -52.49 -0.31 1.11 16 9 C 0.18 4.27 4.68 -4.98 -0.02 4.25 16 10 N -0.53 -10.23 3.60 -230.90 -0.83 -11.06 16 11 C 0.04 0.70 4.98 -3.68 -0.02 0.68 16 12 C 0.11 1.44 7.39 -4.31 -0.03 1.40 16 13 N -0.72 -10.60 5.51 -61.10 -0.34 -10.94 16 14 C 0.53 9.86 7.35 -11.74 -0.09 9.78 16 15 O -0.54 -11.24 15.84 5.56 0.09 -11.15 16 16 C 0.10 2.05 1.43 -70.23 -0.10 1.94 16 17 H 0.11 2.39 5.43 -51.93 -0.28 2.11 16 18 C -0.02 -0.40 3.95 -104.60 -0.41 -0.81 16 19 C -0.08 -1.45 8.03 -39.59 -0.32 -1.76 16 20 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 21 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 22 C -0.10 -1.71 9.79 -39.55 -0.39 -2.10 16 23 C -0.06 -1.16 5.92 -39.52 -0.23 -1.39 16 24 Br -0.05 -0.98 30.73 -68.01 -2.09 -3.07 16 25 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 1.15 6.30 -51.93 -0.33 0.82 16 28 H 0.09 1.47 8.05 -51.93 -0.42 1.06 16 29 H 0.05 0.91 6.72 -51.93 -0.35 0.56 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.39 4.92 8.84 -40.82 -0.36 4.56 16 33 H 0.14 2.48 7.20 -52.49 -0.38 2.10 16 34 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 36 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 311.83 15.07 4.70 4.70 Total: -1.00 -30.02 311.83 -9.62 -39.64 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.10 Total: 5.21 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.77 Total: -5.08 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.43 Total: -46.14 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -2.09 Total: -3.07 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.02 -9.62 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378356859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.636 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds