Wall clock time and date at job start Tue Mar 31 2020 21:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 120.00125 * 2 1 4 4 H 1.48497 * 109.47108 * 240.00378 * 3 2 1 5 5 H 1.48506 * 109.46704 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47194 * 119.99588 * 3 2 1 7 7 C 1.37880 * 120.00522 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00521 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99642 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47010 * 184.80270 * 9 7 2 11 11 C 1.47188 * 111.00076 * 301.83980 * 10 9 7 12 12 C 1.52982 * 108.73418 * 192.36936 * 11 10 9 13 13 N 1.46015 * 110.03678 * 309.70748 * 12 11 10 14 14 C 1.33569 * 122.88761 * 18.25539 * 13 12 11 15 15 O 1.21277 * 118.52258 * 178.23213 * 14 13 12 16 16 C 1.46905 * 111.00309 * 64.73323 * 10 9 7 17 17 H 1.09004 * 109.37911 * 306.38616 * 16 10 9 18 18 C 1.50693 * 109.38339 * 66.17651 * 16 10 9 19 19 C 1.38238 * 120.00815 * 25.21303 * 18 16 10 20 20 C 1.38224 * 120.00809 * 179.97438 * 19 18 16 21 21 C 1.38255 * 120.02377 * 359.97438 * 20 19 18 22 22 C 1.38205 * 120.00995 * 359.97438 * 21 20 19 23 23 C 1.38308 * 120.00452 * 205.45830 * 18 16 10 24 24 Br 1.89109 * 120.00999 * 0.02562 * 23 18 16 25 25 H 0.96998 * 120.00185 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46781 * 64.80139 * 9 7 2 27 27 H 1.09004 * 109.47007 * 304.80184 * 9 7 2 28 28 H 1.09007 * 109.59214 * 312.14316 * 11 10 9 29 29 H 1.09000 * 109.59374 * 72.44218 * 11 10 9 30 30 H 1.09000 * 109.37622 * 69.88098 * 12 11 10 31 31 H 1.08995 * 109.37897 * 189.53528 * 12 11 10 32 32 H 0.97006 * 118.53339 * 198.15963 * 13 12 11 33 33 H 1.07993 * 119.99511 * 359.97438 * 19 18 16 34 34 H 1.08004 * 119.98821 * 180.02562 * 20 19 18 35 35 H 1.08004 * 119.99947 * 180.02562 * 21 20 19 36 36 H 1.07994 * 120.00521 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2015 -3.6132 0.1171 11 6 3.1780 -3.5909 -0.9839 12 6 3.9361 -4.9196 -0.9953 13 7 4.4414 -5.2188 0.3415 14 6 3.9671 -4.6329 1.4441 15 8 4.4226 -4.9647 2.5180 16 6 2.8960 -3.5796 1.4112 17 1 3.3490 -2.5983 1.5531 18 6 1.9057 -3.8382 2.5172 19 6 0.7490 -4.5491 2.2572 20 6 -0.1591 -4.7868 3.2718 21 6 0.0892 -4.3142 4.5471 22 6 1.2459 -3.6043 4.8083 23 6 2.1516 -3.3600 3.7915 24 35 3.7301 -2.3809 4.1461 25 1 -0.4850 0.8400 -0.0004 26 1 0.6909 -2.5952 -0.9295 27 1 0.5611 -2.5204 0.8442 28 1 2.6568 -3.4592 -1.9322 29 1 3.8784 -2.7691 -0.8346 30 1 3.2644 -5.7164 -1.3148 31 1 4.7722 -4.8530 -1.6914 32 1 5.1520 -5.8729 0.4327 33 1 0.5548 -4.9187 1.2613 34 1 -1.0626 -5.3425 3.0684 35 1 -0.6204 -4.5005 5.3397 36 1 1.4395 -3.2349 5.8044 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378356859.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:08 Heat of formation + Delta-G solvation = -9.976840 kcal Electronic energy + Delta-G solvation = -22148.470411 eV Core-core repulsion = 18871.169198 eV Total energy + Delta-G solvation = -3277.301213 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74084 -39.75901 -38.28742 -35.96464 -34.52235 -33.30708 -32.45885 -30.29851 -29.99719 -29.04409 -26.78886 -24.81818 -23.44241 -22.81969 -22.45523 -20.13868 -18.72568 -18.00348 -17.82269 -17.45065 -16.87136 -16.50609 -16.27326 -15.67595 -15.23011 -15.03154 -14.89769 -14.57624 -14.26827 -14.03304 -13.69724 -13.66109 -13.03572 -12.97930 -12.75391 -12.63727 -12.36044 -12.07322 -12.00434 -11.87295 -11.74602 -11.67281 -11.09858 -10.83178 -10.57429 -9.99542 -9.69759 -9.48969 -9.22373 -8.16138 -6.31132 0.23517 0.41509 0.78275 1.34764 1.37650 1.43181 1.60623 2.35111 2.37176 2.80181 3.05065 3.13026 3.68953 3.77598 3.98697 4.07281 4.17041 4.38220 4.47412 4.51372 4.54687 4.66160 4.79353 4.91175 5.07037 5.11936 5.21096 5.32625 5.36693 5.48268 5.56360 5.75274 5.85467 5.95370 5.99482 6.13484 6.23131 6.34198 6.84595 7.25106 7.39145 8.87629 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.010149 B = 0.007206 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2758.130426 B = 3884.833783 C = 4519.409053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.051 0.949 9 C 0.201 3.799 10 N -0.519 5.519 11 C 0.035 3.965 12 C 0.119 3.881 13 N -0.707 5.707 14 C 0.528 3.472 15 O -0.570 6.570 16 C 0.107 3.893 17 H 0.075 0.925 18 C -0.049 4.049 19 C -0.098 4.098 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.089 4.089 24 Br -0.063 7.063 25 H 0.264 0.736 26 H 0.020 0.980 27 H 0.019 0.981 28 H 0.101 0.899 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.408 0.592 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.021 -10.397 3.520 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.594 4.594 8 H 0.069 0.931 9 C 0.075 3.925 10 N -0.244 5.244 11 C -0.094 4.094 12 C -0.004 4.004 13 N -0.360 5.360 14 C 0.313 3.687 15 O -0.449 6.449 16 C -0.005 4.005 17 H 0.092 0.908 18 C -0.052 4.052 19 C -0.117 4.117 20 C -0.131 4.131 21 C -0.131 4.131 22 C -0.130 4.130 23 C -0.169 4.169 24 Br 0.023 6.977 25 H 0.073 0.927 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.119 0.881 29 H 0.048 0.952 30 H 0.107 0.893 31 H 0.131 0.869 32 H 0.246 0.754 33 H 0.156 0.844 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.267 -10.377 4.115 11.951 hybrid contribution 0.727 1.795 -0.144 1.942 sum 4.995 -8.581 3.971 10.694 Atomic orbital electron populations 1.70006 1.07113 1.27653 1.50762 1.25541 0.95380 1.01897 0.94624 0.85951 0.78852 0.80240 0.78826 1.19095 1.20751 1.20419 1.21839 0.93028 0.93012 1.51477 0.93058 1.19519 0.90961 0.85530 0.96516 1.63000 1.16188 1.45266 0.99910 1.22457 0.94553 0.96235 0.96120 1.21759 0.99380 0.96761 0.82539 1.45418 1.39970 1.43684 1.06877 1.19917 0.82548 0.82010 0.84200 1.90708 1.60474 1.63966 1.29705 1.20437 0.91832 0.97147 0.91060 0.90782 1.19276 0.96313 0.97808 0.91829 1.21254 0.92681 0.97107 1.00657 1.21634 0.99616 0.99264 0.92622 1.21517 0.96545 0.96989 0.98012 1.21310 0.94007 0.99305 0.98364 1.21847 0.94867 1.03420 0.96729 1.96552 1.33947 1.72159 1.95050 0.92719 0.96215 0.96246 0.88109 0.95186 0.89308 0.86916 0.75436 0.84419 0.82464 0.81706 0.83638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.38 13.29 21.45 0.28 -52.09 16 2 C 0.03 1.42 5.46 84.66 0.46 1.89 16 3 Si 0.94 43.27 29.54 68.60 2.03 45.30 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.55 -29.07 7.59 25.60 0.19 -28.88 16 8 H 0.05 2.69 5.90 -2.91 -0.02 2.67 16 9 C 0.20 9.65 4.68 85.56 0.40 10.05 16 10 N -0.52 -20.22 3.60 -884.43 -3.19 -23.40 16 11 C 0.03 1.12 4.98 86.24 0.43 1.55 16 12 C 0.12 2.70 7.39 86.46 0.64 3.34 16 13 N -0.71 -19.45 5.51 -466.28 -2.57 -22.03 16 14 C 0.53 19.48 7.35 87.71 0.65 20.12 16 15 O -0.57 -23.58 15.84 -3.02 -0.05 -23.63 16 16 C 0.11 4.35 1.43 43.28 0.06 4.41 16 17 H 0.07 3.47 5.43 -2.38 -0.01 3.46 16 18 C -0.05 -1.99 3.95 -19.85 -0.08 -2.06 16 19 C -0.10 -3.51 8.03 22.27 0.18 -3.33 16 20 C -0.11 -3.28 10.05 22.27 0.22 -3.06 16 21 C -0.11 -3.04 10.05 22.27 0.22 -2.82 16 22 C -0.11 -3.53 9.79 22.29 0.22 -3.31 16 23 C -0.09 -3.45 5.92 22.31 0.13 -3.32 16 24 Br -0.06 -2.42 30.73 -20.37 -0.63 -3.05 16 25 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.02 1.03 6.30 -2.39 -0.02 1.02 16 28 H 0.10 3.08 8.05 -2.38 -0.02 3.06 16 29 H 0.03 1.09 6.72 -2.39 -0.02 1.07 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.41 9.20 8.84 -92.70 -0.82 8.38 16 33 H 0.14 4.86 7.20 -2.91 -0.02 4.84 16 34 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 35 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -66.76 311.83 -0.09 -66.85 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.30 Total: 17.46 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 3.73 Total: -5.43 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -5.47 Total: -97.52 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 35 Polarization: -2.42 SS G_CDS: -0.63 Total: -3.05 kcal Total: -66.76 -0.09 -66.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378356859.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.876 kcal (2) G-P(sol) polarization free energy of solvation -66.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds