Wall clock time and date at job start Tue Mar 31 2020 20:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99882 * 2 1 4 4 H 1.48498 * 109.46790 * 270.00024 * 3 2 1 5 5 H 1.48500 * 109.47021 * 29.99976 * 3 2 1 6 6 H 1.48497 * 109.46961 * 150.00098 * 3 2 1 7 7 C 1.37877 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00035 * 0.02562 * 7 2 1 9 9 C 1.50690 * 120.00130 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47705 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00474 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99901 * 4.97312 * 11 10 9 13 13 N 1.34773 * 120.00105 * 184.96710 * 11 10 9 14 14 C 1.47244 * 121.34897 * 174.78780 * 13 11 10 15 15 C 1.52786 * 107.88238 * 115.64448 * 14 13 11 16 16 C 1.50597 * 110.82498 * 47.44912 * 15 14 13 17 17 C 1.39063 * 117.61480 * 160.38170 * 16 15 14 18 18 Br 1.89108 * 119.71611 * 359.59029 * 17 16 15 19 19 C 1.37993 * 120.56757 * 179.57181 * 17 16 15 20 20 C 1.38252 * 119.81435 * 359.95790 * 19 17 16 21 21 C 1.37785 * 119.70938 * 0.13403 * 20 19 17 22 22 C 1.37598 * 122.91819 * 340.22124 * 16 15 14 23 23 C 1.46688 * 121.34848 * 354.76975 * 13 11 10 24 24 H 0.96997 * 120.00043 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46960 * 60.00214 * 9 7 2 26 26 H 1.09001 * 109.47342 * 300.00705 * 9 7 2 27 27 H 0.97004 * 119.99314 * 359.97438 * 10 9 7 28 28 H 1.08997 * 109.77698 * 356.04183 * 14 13 11 29 29 H 1.09007 * 109.82033 * 235.26484 * 14 13 11 30 30 H 1.09000 * 109.20245 * 167.78917 * 15 14 13 31 31 H 1.09004 * 109.19812 * 287.12171 * 15 14 13 32 32 H 1.08007 * 120.09335 * 179.97438 * 19 17 16 33 33 H 1.07994 * 120.13934 * 180.21695 * 20 19 17 34 34 H 1.08006 * 119.68912 * 179.97438 * 21 20 19 35 35 H 1.08992 * 109.43988 * 344.38947 * 23 13 11 36 36 H 1.08999 * 109.43860 * 104.26125 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 7 3.9999 -2.5753 0.0001 11 6 5.3249 -2.8216 0.0001 12 8 6.1143 -1.9013 0.0914 13 7 5.7750 -4.0879 -0.1008 14 6 7.2128 -4.3829 -0.2178 15 6 7.6342 -5.1640 1.0259 16 6 6.6680 -6.2843 1.3074 17 6 7.1059 -7.3242 2.1201 18 35 8.8647 -7.2946 2.8142 19 6 6.2679 -8.3774 2.4248 20 6 4.9813 -8.4005 1.9195 21 6 4.5460 -7.3720 1.1124 22 6 5.3890 -6.3136 0.8008 23 6 4.8523 -5.2282 -0.0982 24 1 -0.4850 0.8400 -0.0004 25 1 3.8751 -0.6797 0.8895 26 1 3.8745 -0.6808 -0.8905 27 1 3.3695 -3.3126 0.0009 28 1 7.7766 -3.4519 -0.2774 29 1 7.3958 -4.9825 -1.1095 30 1 8.6293 -5.5799 0.8679 31 1 7.6596 -4.4891 1.8815 32 1 6.6161 -9.1813 3.0565 33 1 4.3199 -9.2203 2.1574 34 1 3.5409 -7.3906 0.7175 35 1 3.8771 -4.9050 0.2658 36 1 4.7503 -5.6146 -1.1123 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426422828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:48 Heat of formation + Delta-G solvation = 4.624899 kcal Electronic energy + Delta-G solvation = -20783.048235 eV Core-core repulsion = 17506.380201 eV Total energy + Delta-G solvation = -3276.668034 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.61457 -39.08944 -36.07961 -34.45284 -33.61966 -32.41278 -31.68564 -30.77144 -28.97280 -27.76035 -25.75537 -24.00442 -22.31924 -21.94601 -20.86667 -19.22211 -18.03839 -16.92510 -16.44287 -15.96232 -15.84756 -15.18189 -14.86052 -14.58765 -14.44643 -13.85078 -13.66213 -13.53999 -13.08769 -13.00116 -12.52347 -12.42947 -12.25903 -12.15619 -11.81712 -11.39373 -11.04478 -10.98967 -10.92386 -10.76336 -10.34801 -9.96491 -9.61557 -9.46815 -8.94989 -8.89359 -8.78131 -8.58752 -8.02015 -6.21203 -4.23216 0.82000 1.00012 1.38719 2.97201 3.27928 3.29285 3.35096 3.44029 3.68387 4.32983 4.34275 4.41029 4.52693 4.67910 4.77252 5.00767 5.09533 5.14513 5.15647 5.21066 5.38811 5.40928 5.50422 5.62184 5.78604 5.95557 5.97112 6.08312 6.20835 6.50326 6.54476 6.76854 7.11050 7.22042 7.35988 7.48239 8.24108 8.62569 8.77900 9.13785 9.39863 10.90713 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.022668 B = 0.002901 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.940247 B = 9650.049569 C =10348.338493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.722 5.722 11 C 0.703 3.297 12 O -0.597 6.597 13 N -0.638 5.638 14 C 0.134 3.866 15 C -0.108 4.108 16 C -0.035 4.035 17 C -0.095 4.095 18 Br -0.053 7.053 19 C -0.091 4.091 20 C -0.118 4.118 21 C -0.096 4.096 22 C -0.086 4.086 23 C 0.153 3.847 24 H 0.268 0.732 25 H 0.024 0.976 26 H 0.019 0.981 27 H 0.391 0.609 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.603 -21.174 3.602 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.115 3.885 10 N -0.375 5.375 11 C 0.405 3.595 12 O -0.476 6.476 13 N -0.377 5.377 14 C 0.010 3.990 15 C -0.146 4.146 16 C -0.037 4.037 17 C -0.174 4.174 18 Br 0.033 6.967 19 C -0.111 4.111 20 C -0.137 4.137 21 C -0.114 4.114 22 C -0.088 4.088 23 C 0.029 3.971 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.226 0.774 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.642 -20.273 3.914 26.519 hybrid contribution -0.498 0.304 -0.024 0.584 sum 16.144 -19.969 3.890 25.972 Atomic orbital electron populations 1.69878 1.06207 1.27431 1.49509 1.24773 0.94783 0.99158 0.93854 0.86817 0.80652 0.83184 0.79061 1.19843 1.20923 1.18393 1.21070 0.88510 0.95167 1.53286 0.90358 1.19383 0.94875 0.77562 0.96711 1.45545 1.03649 1.11132 1.77198 1.15927 0.83680 0.81863 0.78045 1.90860 1.55443 1.42634 1.58639 1.47216 1.06887 1.04236 1.79372 1.21361 0.80852 1.00735 0.96057 1.21101 0.97638 0.95404 1.00428 1.19377 0.94462 0.94544 0.95336 1.21889 0.92622 0.99121 1.03770 1.96679 1.16254 1.98875 1.84876 1.21032 0.93669 0.97019 0.99363 1.21019 0.95461 0.99113 0.98073 1.21194 0.99826 0.93123 0.97306 1.19857 0.93215 0.96736 0.98983 1.20387 0.93396 0.84911 0.98372 0.92265 0.95785 0.96347 0.77383 0.88059 0.91282 0.88989 0.89260 0.85101 0.84932 0.84880 0.88624 0.89941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.54 -14.84 9.83 -34.44 -0.34 -15.17 16 8 H 0.08 2.21 7.84 -52.48 -0.41 1.80 16 9 C 0.24 5.89 4.50 -5.20 -0.02 5.87 16 10 N -0.72 -14.97 5.45 -66.42 -0.36 -15.33 16 11 C 0.70 14.04 8.32 -86.92 -0.72 13.32 16 12 O -0.60 -14.08 15.86 5.29 0.08 -13.99 16 13 N -0.64 -9.61 2.93 -180.11 -0.53 -10.14 16 14 C 0.13 1.69 6.43 -3.75 -0.02 1.67 16 15 C -0.11 -1.23 5.15 -28.04 -0.14 -1.38 16 16 C -0.04 -0.40 5.76 -104.60 -0.60 -1.01 16 17 C -0.09 -1.00 6.22 -39.37 -0.24 -1.25 16 18 Br -0.05 -0.51 31.67 -68.01 -2.15 -2.66 16 19 C -0.09 -0.83 9.77 -39.67 -0.39 -1.22 16 20 C -0.12 -0.99 10.05 -39.74 -0.40 -1.39 16 21 C -0.10 -0.88 9.61 -39.52 -0.38 -1.26 16 22 C -0.09 -0.96 5.82 -104.58 -0.61 -1.56 16 23 C 0.15 1.81 6.07 -5.04 -0.03 1.78 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 26 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 27 H 0.39 7.11 5.98 -40.82 -0.24 6.87 16 28 H 0.10 1.42 7.10 -51.93 -0.37 1.05 16 29 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.09 0.90 6.87 -51.93 -0.36 0.55 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 34 H 0.13 0.95 8.05 -52.48 -0.42 0.53 16 35 H 0.10 1.13 5.98 -51.93 -0.31 0.82 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -32.62 316.53 -10.25 -42.87 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.16 Total: 2.80 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -4.00 Total: 0.51 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.12 Total: -51.08 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.15 Total: -2.66 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.62 -10.25 -42.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426422828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.498 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds