Wall clock time and date at job start Tue Mar 31 2020 20:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99702 * 2 1 4 4 H 1.48503 * 109.47322 * 270.00289 * 3 2 1 5 5 H 1.48503 * 109.46894 * 30.00139 * 3 2 1 6 6 H 1.48499 * 109.46998 * 150.00008 * 3 2 1 7 7 C 1.37874 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99824 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47030 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99852 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00136 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99694 * 179.97438 * 11 10 9 14 14 N 1.46496 * 109.47055 * 179.97438 * 13 11 10 15 15 S 1.65603 * 120.00252 * 165.00239 * 14 13 11 16 16 O 1.42102 * 106.39816 * 311.46063 * 15 14 13 17 17 O 1.42091 * 106.40305 * 178.54019 * 15 14 13 18 18 C 1.76201 * 107.21735 * 64.99748 * 15 14 13 19 19 C 1.33347 * 125.18395 * 90.00120 * 18 15 14 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 15 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19221 * 270.00345 * 18 15 14 24 24 H 0.97000 * 120.00594 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47266 * 60.00536 * 9 7 2 26 26 H 1.09001 * 109.47292 * 300.00204 * 9 7 2 27 27 H 0.97003 * 119.99896 * 359.97438 * 10 9 7 28 28 H 1.09004 * 109.47027 * 59.99900 * 13 11 10 29 29 H 1.09001 * 109.47174 * 299.99975 * 13 11 10 30 30 H 0.97003 * 120.00280 * 345.00234 * 14 13 11 31 31 H 1.07996 * 122.54060 * 0.02562 * 19 18 15 32 32 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5616 -5.1049 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 7 2.0010 -7.2974 -0.0015 15 16 2.7866 -8.7071 -0.3732 16 8 3.5158 -8.4572 -1.5670 17 8 1.8248 -9.7461 -0.2530 18 6 3.9820 -8.9868 0.8907 19 6 3.7659 -9.6708 2.0148 20 6 4.8570 -9.7596 2.8629 21 6 5.9594 -9.1462 2.4261 22 17 7.4743 -9.0882 3.2717 23 16 5.6420 -8.4066 0.8622 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 3.1569 -3.4353 -0.0009 28 1 3.3602 -5.9713 0.8883 29 1 3.3600 -5.9705 -0.8917 30 1 1.0559 -7.3119 0.2163 31 1 2.8122 -10.1215 2.2464 32 1 4.8178 -10.2811 3.8079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427634160.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:00 Heat of formation + Delta-G solvation = -83.291303 kcal Electronic energy + Delta-G solvation = -21477.372734 eV Core-core repulsion = 17717.850686 eV Total energy + Delta-G solvation = -3759.522048 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.13460 -38.59698 -37.46094 -37.16251 -36.12399 -34.96015 -34.18211 -32.43726 -30.19306 -28.36300 -26.15450 -24.94813 -22.58912 -21.09750 -20.03925 -19.73222 -19.07025 -18.12502 -17.08701 -16.68344 -16.30692 -15.87061 -15.48968 -15.22903 -15.16044 -14.69751 -14.40173 -14.01090 -13.80723 -13.39485 -13.22707 -12.93942 -12.39631 -12.36355 -12.29409 -12.24977 -12.22764 -12.01355 -11.78978 -11.50115 -11.31572 -11.04457 -10.93765 -10.38832 -9.89918 -9.62298 -9.48133 -9.31756 -9.12807 -8.81976 -8.04234 -6.22706 -4.30270 -0.26097 0.09048 0.46903 1.06170 1.55080 1.81329 2.72584 3.10025 3.20989 3.27347 3.29285 3.43701 3.85846 4.23483 4.30944 4.54841 4.75130 4.89687 5.13671 5.14787 5.17458 5.21171 5.26029 5.57047 5.62397 6.82916 7.19249 7.25306 7.41775 7.56863 7.88781 8.44880 8.65673 8.90400 9.36385 10.87386 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.002781 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.766531 B =10065.759786 C =11562.565654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.547 6.547 13 C 0.091 3.909 14 N -1.096 6.096 15 S 2.725 3.275 16 O -0.946 6.946 17 O -0.945 6.945 18 C -0.793 4.793 19 C 0.018 3.982 20 C -0.149 4.149 21 C -0.117 4.117 22 Cl 0.001 6.999 23 S 0.273 5.727 24 H 0.267 0.733 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.394 0.606 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.431 0.569 31 H 0.166 0.834 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.946 -20.109 5.912 25.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.354 5.354 11 C 0.281 3.719 12 O -0.426 6.426 13 C -0.039 4.039 14 N -0.862 5.862 15 S 2.809 3.191 16 O -0.936 6.936 17 O -0.935 6.935 18 C -0.994 4.994 19 C -0.017 4.017 20 C -0.181 4.181 21 C -0.263 4.263 22 Cl 0.030 6.970 23 S 0.538 5.462 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.227 0.773 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.271 0.729 31 H 0.183 0.817 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 14.000 -19.749 4.220 24.573 hybrid contribution 0.262 0.358 1.990 2.039 sum 14.262 -19.391 6.210 24.859 Atomic orbital electron populations 1.69965 1.06136 1.27440 1.48656 1.24951 0.94921 0.99515 0.94590 0.86398 0.79593 0.82535 0.78279 1.20410 1.21010 1.19712 1.21204 0.93326 0.90332 1.53548 0.91750 1.19178 0.88227 0.81745 0.97998 1.46436 1.11522 1.05819 1.71650 1.20123 0.89270 0.84378 0.78135 1.90664 1.16440 1.84395 1.51066 1.21204 0.94830 0.83738 1.04115 1.55172 1.22709 1.19969 1.88301 1.01206 0.72693 0.72294 0.72947 1.93623 1.73674 1.84962 1.41362 1.93615 1.59172 1.54218 1.86524 1.36224 1.17762 1.21600 1.23772 1.19875 1.00108 0.92227 0.89498 1.20453 0.91126 1.03491 1.03071 1.26049 0.93269 1.06738 1.00246 1.98411 1.26353 1.97020 1.75260 1.84477 1.00952 1.49474 1.11288 0.92361 0.95246 0.95292 0.77323 0.89049 0.87443 0.72905 0.81707 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.36 13.29 55.43 0.74 -24.62 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -14.16 9.28 -34.44 -0.32 -14.48 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.25 6.24 5.43 -5.19 -0.03 6.21 16 10 N -0.71 -13.48 5.55 -61.47 -0.34 -13.83 16 11 C 0.50 8.87 7.90 -10.98 -0.09 8.78 16 12 O -0.55 -11.87 15.73 5.56 0.09 -11.78 16 13 C 0.09 1.11 6.70 -5.19 -0.03 1.08 16 14 N -1.10 -13.10 5.93 -11.65 -0.07 -13.17 16 15 S 2.73 31.17 5.88 -107.50 -0.63 30.54 16 16 O -0.95 -12.97 17.38 -57.17 -0.99 -13.97 16 17 O -0.95 -12.72 17.80 -57.17 -1.02 -13.74 16 18 C -0.79 -7.47 6.54 29.02 0.19 -7.28 16 19 C 0.02 0.14 9.84 -41.20 -0.41 -0.26 16 20 C -0.15 -1.08 10.13 -41.15 -0.42 -1.49 16 21 C -0.12 -0.94 7.10 29.08 0.21 -0.73 16 22 Cl 0.00 0.01 29.29 -51.86 -1.52 -1.51 16 23 S 0.27 2.37 23.22 -107.50 -2.50 -0.12 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.39 6.20 8.32 -40.82 -0.34 5.86 16 28 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.11 1.13 7.75 -51.93 -0.40 0.73 16 30 H 0.43 5.39 7.70 -34.47 -0.27 5.13 16 31 H 0.17 1.01 8.05 -52.49 -0.42 0.59 16 32 H 0.16 0.79 8.06 -52.48 -0.42 0.36 16 LS Contribution 333.51 15.07 5.03 5.03 Total: -1.00 -33.99 333.51 -9.89 -43.88 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -2.65 Total: 4.62 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -0.99 Total: -6.54 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.33 Total: -51.62 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.92 Total: -39.49 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 33.55 SS G_CDS: -3.13 Total: 30.42 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -1.52 Total: -1.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.99 -9.89 -43.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634160.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.414 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds