Wall clock time and date at job start Tue Mar 31 2020 20:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99702 * 2 1 4 4 H 1.48503 * 109.47322 * 270.00289 * 3 2 1 5 5 H 1.48503 * 109.46894 * 30.00139 * 3 2 1 6 6 H 1.48499 * 109.46998 * 150.00008 * 3 2 1 7 7 C 1.37874 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99824 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47030 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99852 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00136 * 359.97438 * 11 10 9 13 13 C 1.50707 * 119.99694 * 179.97438 * 11 10 9 14 14 N 1.46496 * 109.47055 * 179.97438 * 13 11 10 15 15 S 1.65603 * 120.00252 * 165.00239 * 14 13 11 16 16 O 1.42102 * 106.39816 * 311.46063 * 15 14 13 17 17 O 1.42091 * 106.40305 * 178.54019 * 15 14 13 18 18 C 1.76201 * 107.21735 * 64.99748 * 15 14 13 19 19 C 1.33347 * 125.18395 * 90.00120 * 18 15 14 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 15 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19221 * 270.00345 * 18 15 14 24 24 H 0.97000 * 120.00594 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47266 * 60.00536 * 9 7 2 26 26 H 1.09001 * 109.47292 * 300.00204 * 9 7 2 27 27 H 0.97003 * 119.99896 * 359.97438 * 10 9 7 28 28 H 1.09004 * 109.47027 * 59.99900 * 13 11 10 29 29 H 1.09001 * 109.47174 * 299.99975 * 13 11 10 30 30 H 0.97003 * 120.00280 * 345.00234 * 14 13 11 31 31 H 1.07996 * 122.54060 * 0.02562 * 19 18 15 32 32 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5616 -5.1049 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 7 2.0010 -7.2974 -0.0015 15 16 2.7866 -8.7071 -0.3732 16 8 3.5158 -8.4572 -1.5670 17 8 1.8248 -9.7461 -0.2530 18 6 3.9820 -8.9868 0.8907 19 6 3.7659 -9.6708 2.0148 20 6 4.8570 -9.7596 2.8629 21 6 5.9594 -9.1462 2.4261 22 17 7.4743 -9.0882 3.2717 23 16 5.6420 -8.4066 0.8622 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 3.1569 -3.4353 -0.0009 28 1 3.3602 -5.9713 0.8883 29 1 3.3600 -5.9705 -0.8917 30 1 1.0559 -7.3119 0.2163 31 1 2.8122 -10.1215 2.2464 32 1 4.8178 -10.2811 3.8079 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427634160.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:00 Heat of formation + Delta-G solvation = -111.018944 kcal Electronic energy + Delta-G solvation = -21478.575095 eV Core-core repulsion = 17717.850686 eV Total energy + Delta-G solvation = -3760.724408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 337.999 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.64312 -39.21767 -38.42321 -37.77166 -37.12069 -36.37866 -35.65040 -34.35869 -30.83822 -30.02649 -27.65673 -25.58853 -24.47700 -21.85234 -21.54794 -20.45095 -19.95988 -19.35472 -18.43135 -17.78565 -17.30648 -17.11219 -16.85866 -16.56923 -16.42197 -15.99329 -15.24542 -15.03527 -14.73227 -14.56527 -14.41513 -13.98953 -13.94930 -13.60557 -13.37689 -13.32374 -13.29784 -13.04062 -12.93531 -12.88557 -12.69992 -12.22856 -12.21124 -11.90398 -11.46580 -11.00757 -10.79108 -10.71532 -10.25876 -9.85050 -9.76317 -8.27199 -6.43090 -0.98943 -0.72531 -0.17656 0.41833 0.94843 1.21193 1.46117 1.47659 1.58712 1.65976 1.82008 2.33514 2.53708 2.56752 3.08516 3.33646 3.68101 3.97683 4.17941 4.21718 4.29727 4.52883 4.55221 4.64644 5.03307 5.14344 5.27185 5.47395 5.68266 5.81961 5.87637 6.67689 6.84779 7.25053 7.43177 8.84768 Molecular weight = 338.00amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.002781 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.766531 B =10065.759786 C =11562.565654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.982 3.018 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.555 4.555 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.701 5.701 11 C 0.496 3.504 12 O -0.590 6.590 13 C 0.100 3.900 14 N -1.102 6.102 15 S 2.747 3.253 16 O -0.972 6.972 17 O -0.968 6.968 18 C -0.806 4.806 19 C 0.026 3.974 20 C -0.146 4.146 21 C -0.118 4.118 22 Cl 0.008 6.992 23 S 0.266 5.734 24 H 0.268 0.732 25 H -0.010 1.010 26 H -0.007 1.007 27 H 0.413 0.587 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.429 0.571 31 H 0.183 0.817 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.589 -20.483 6.958 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.592 4.592 8 H 0.105 0.895 9 C 0.142 3.858 10 N -0.352 5.352 11 C 0.282 3.718 12 O -0.472 6.472 13 C -0.030 4.030 14 N -0.866 5.866 15 S 2.834 3.166 16 O -0.962 6.962 17 O -0.959 6.959 18 C -1.009 5.009 19 C -0.010 4.010 20 C -0.179 4.179 21 C -0.265 4.265 22 Cl 0.036 6.964 23 S 0.531 5.469 24 H 0.077 0.923 25 H 0.008 0.992 26 H 0.011 0.989 27 H 0.250 0.750 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.268 0.732 31 H 0.200 0.800 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 16.682 -20.144 5.238 26.674 hybrid contribution -0.537 0.360 1.729 1.846 sum 16.145 -19.784 6.967 26.469 Atomic orbital electron populations 1.70127 1.08245 1.28508 1.50109 1.26027 0.95720 1.03831 0.93985 0.85193 0.78591 0.77169 0.78485 1.19836 1.21239 1.17737 1.21639 0.94469 0.90498 1.52644 0.89507 1.18591 0.88675 0.84098 0.94455 1.46117 1.11629 1.05219 1.72217 1.21042 0.89672 0.84989 0.76122 1.90647 1.18912 1.85089 1.52515 1.21300 0.93369 0.81084 1.07212 1.55177 1.22761 1.20032 1.88590 1.00239 0.72217 0.71485 0.72684 1.93587 1.74050 1.85173 1.43351 1.93582 1.60378 1.54885 1.87018 1.35782 1.17650 1.23597 1.23920 1.20207 1.01085 0.90919 0.88751 1.20722 0.90338 1.03031 1.03772 1.26181 0.93816 1.06590 0.99901 1.98420 1.25991 1.96964 1.74977 1.84495 1.00470 1.49902 1.12027 0.92329 0.99243 0.98937 0.75035 0.84973 0.85174 0.73243 0.80024 0.79804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.98 41.01 29.54 68.60 2.03 43.04 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.55 -28.73 9.28 25.60 0.24 -28.50 16 8 H 0.09 4.00 7.60 -2.91 -0.02 3.98 16 9 C 0.26 13.71 5.43 85.63 0.46 14.18 16 10 N -0.70 -26.65 5.55 -466.78 -2.59 -29.24 16 11 C 0.50 17.55 7.90 87.66 0.69 18.24 16 12 O -0.59 -26.36 15.73 -3.02 -0.05 -26.41 16 13 C 0.10 2.24 6.70 85.64 0.57 2.82 16 14 N -1.10 -25.18 5.93 -190.78 -1.13 -26.32 16 15 S 2.75 59.77 5.88 -56.49 -0.33 59.43 16 16 O -0.97 -25.68 17.38 -128.00 -2.22 -27.90 16 17 O -0.97 -25.41 17.80 -128.00 -2.28 -27.68 16 18 C -0.81 -13.52 6.54 66.71 0.44 -13.09 16 19 C 0.03 0.34 9.84 21.22 0.21 0.55 16 20 C -0.15 -1.67 10.13 21.25 0.22 -1.45 16 21 C -0.12 -1.59 7.10 66.75 0.47 -1.12 16 22 Cl 0.01 0.10 29.29 -2.72 -0.08 0.02 16 23 S 0.27 4.05 23.22 -56.49 -1.31 2.74 16 24 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 25 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 26 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.41 12.30 8.32 -92.71 -0.77 11.53 16 28 H 0.13 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.13 2.41 7.75 -2.39 -0.02 2.39 16 30 H 0.43 10.66 7.70 -96.74 -0.75 9.92 16 31 H 0.18 1.73 8.05 -2.91 -0.02 1.71 16 32 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -75.51 333.51 -4.23 -79.74 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -0.31 Total: 14.78 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 3.77 Total: -7.69 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -3.44 Total: -110.06 kcal Atomic # 8 Polarization: -77.44 SS G_CDS: -4.55 Total: -81.99 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 63.82 SS G_CDS: -1.64 Total: 62.17 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.08 Total: 0.02 kcal Total: -75.51 -4.23 -79.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427634160.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.280 kcal (2) G-P(sol) polarization free energy of solvation -75.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds