Wall clock time and date at job start Tue Mar 31 2020 20:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.36628 * 125.45781 * 353.91152 * 3 2 1 5 5 C 1.37615 * 113.27037 * 180.02562 * 4 3 2 6 6 C 1.33716 * 115.09151 * 0.02562 * 5 4 3 7 7 S 1.76199 * 124.50735 * 180.02562 * 6 5 4 8 8 O 1.42105 * 106.40025 * 203.53773 * 7 6 5 9 9 O 1.42101 * 106.40369 * 336.45266 * 7 6 5 10 10 N 1.65603 * 107.22236 * 89.99513 * 7 6 5 11 11 C 1.39988 * 119.99621 * 64.99845 * 10 7 6 12 12 C 1.40423 * 125.97341 * 179.71655 * 11 10 7 13 13 C 1.35254 * 107.86087 * 179.82985 * 12 11 10 14 14 N 1.34955 * 107.86190 * 0.42688 * 13 12 11 15 15 C 1.46501 * 125.97300 * 179.72993 * 14 13 12 16 16 C 1.50691 * 109.47591 * 124.97872 * 15 14 13 17 17 H 1.08003 * 119.99786 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00452 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99552 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47204 * 59.99712 * 20 18 16 22 22 H 1.48504 * 109.46668 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47028 * 299.99242 * 20 18 16 24 24 N 1.31226 * 125.97707 * 0.02625 * 11 10 7 25 25 S 1.70603 * 110.97954 * 359.97438 * 6 5 4 26 26 H 1.07999 * 123.36491 * 0.02562 * 4 3 2 27 27 H 1.08000 * 122.45505 * 179.73076 * 5 4 3 28 28 H 0.96996 * 120.00207 * 244.99635 * 10 7 6 29 29 H 1.08000 * 126.06939 * 359.96442 * 12 11 10 30 30 H 1.08001 * 126.06912 * 180.14067 * 13 12 11 31 31 H 1.09002 * 109.46858 * 244.97915 * 15 14 13 32 32 H 1.09003 * 109.47054 * 4.97695 * 15 14 13 33 33 H 0.97001 * 119.99648 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3611 -1.1056 0.1180 5 6 4.7061 -0.8161 0.0878 6 6 5.0041 0.4802 -0.0495 7 16 6.6421 1.1260 -0.1180 8 8 6.5545 2.4858 0.2855 9 8 7.4758 0.1752 0.5302 10 7 7.0977 1.1391 -1.7101 11 6 6.4303 1.9650 -2.6223 12 6 6.7145 2.0791 -3.9927 13 6 5.8485 2.9725 -4.5230 14 7 5.0515 3.4168 -3.5287 15 6 3.9749 4.4012 -3.6634 16 6 2.6901 3.8160 -3.1367 17 1 2.6766 2.8110 -2.7414 18 6 1.5315 4.5630 -3.1602 19 7 1.5478 5.7866 -3.6420 20 14 -0.0610 3.8377 -2.5066 21 1 0.1078 3.4826 -1.0747 22 1 -1.1522 4.8357 -2.6434 23 1 -0.4045 2.6186 -3.2818 24 7 5.4334 2.7721 -2.3452 25 16 3.5874 1.4253 -0.1508 26 1 2.9714 -2.1072 0.2245 27 1 5.4653 -1.5794 0.1736 28 1 7.8270 0.5746 -2.0105 29 1 7.4861 1.5463 -4.5287 30 1 5.8057 3.2797 -5.5575 31 1 4.2272 5.2957 -3.0938 32 1 3.8511 4.6627 -4.7144 33 1 0.7328 6.3124 -3.6583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435501726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:40 Heat of formation + Delta-G solvation = 74.834412 kcal Electronic energy + Delta-G solvation = -24242.173767 eV Core-core repulsion = 20524.234165 eV Total energy + Delta-G solvation = -3717.939602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.029 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64372 -38.29958 -37.21535 -36.39749 -35.91179 -35.35895 -33.38944 -30.88820 -30.44782 -29.57642 -26.77703 -25.52178 -23.30165 -21.29798 -20.98306 -20.78143 -20.21247 -18.56696 -17.47841 -16.99391 -16.72410 -16.62251 -16.16718 -15.48575 -14.85694 -14.56406 -14.32640 -14.31725 -14.13241 -13.49304 -13.23866 -12.98512 -12.96350 -12.80059 -12.56946 -12.39008 -12.13305 -12.09621 -12.02586 -11.95175 -11.47914 -11.28948 -11.00429 -10.89992 -10.78371 -10.35168 -10.13338 -9.71148 -9.34713 -8.73334 -8.64746 -8.43316 -7.78169 -6.35201 -4.40245 -0.06922 0.30829 1.15304 1.68472 2.00565 2.53201 2.66010 2.82679 3.16052 3.17144 3.20218 3.21328 3.26096 3.45154 3.69145 3.75034 4.20418 4.48707 4.87563 4.99663 5.03269 5.13534 5.31739 5.56086 5.66377 5.92500 6.02218 6.06181 6.16244 6.53797 6.87355 6.99843 7.18651 7.31611 7.56336 7.74355 7.82235 8.31002 8.65957 9.25659 10.73818 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.006563 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.673861 B = 4265.516067 C = 6423.867876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.277 3.723 3 C -0.156 4.156 4 C -0.099 4.099 5 C -0.018 4.018 6 C -0.833 4.833 7 S 2.722 3.278 8 O -0.921 6.921 9 O -0.949 6.949 10 N -1.010 6.010 11 C 0.273 3.727 12 C -0.302 4.302 13 C 0.072 3.928 14 N -0.309 5.309 15 C 0.256 3.744 16 C -0.532 4.532 17 H 0.070 0.930 18 C 0.070 3.930 19 N -0.890 5.890 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.273 1.273 24 N -0.310 5.310 25 S 0.479 5.521 26 H 0.157 0.843 27 H 0.159 0.841 28 H 0.433 0.567 29 H 0.141 0.859 30 H 0.172 0.828 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.063 -11.524 2.438 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.040 4.040 3 C -0.280 4.280 4 C -0.136 4.136 5 C -0.056 4.056 6 C -1.037 5.037 7 S 2.807 3.193 8 O -0.911 6.911 9 O -0.940 6.940 10 N -0.764 5.764 11 C 0.017 3.983 12 C -0.336 4.336 13 C -0.080 4.080 14 N -0.090 5.090 15 C 0.139 3.861 16 C -0.570 4.570 17 H 0.088 0.912 18 C -0.133 4.133 19 N -0.527 5.527 20 Si 0.715 3.285 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.198 1.198 24 N -0.141 5.141 25 S 0.753 5.247 26 H 0.174 0.826 27 H 0.176 0.824 28 H 0.270 0.730 29 H 0.159 0.841 30 H 0.190 0.810 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.376 -8.779 3.931 12.121 hybrid contribution 0.048 -2.790 -0.796 2.901 sum 7.424 -11.569 3.135 14.099 Atomic orbital electron populations 1.81275 1.11111 1.06515 1.08190 1.24268 0.90977 0.94561 0.94146 1.21495 0.90153 1.02454 1.13887 1.20734 0.91973 0.98721 1.02192 1.19515 0.96693 0.93744 0.95614 1.35413 1.30581 1.09991 1.27745 1.01384 0.72317 0.73905 0.71723 1.93676 1.85801 1.32526 1.79101 1.93602 1.64779 1.63932 1.71641 1.52537 1.44735 1.52351 1.26820 1.18685 0.95121 0.94651 0.89802 1.20838 1.09226 1.11092 0.92429 1.22465 0.92727 0.97046 0.95750 1.49091 1.25935 1.31447 1.02495 1.19849 0.81875 0.85131 0.99247 1.21154 0.91848 1.01456 1.42547 0.91174 1.24832 0.98938 0.94683 0.94884 1.69877 1.29153 1.08878 1.44822 0.86693 0.82627 0.79236 0.79976 1.19790 1.20556 1.19841 1.77301 1.15547 1.12847 1.08409 1.84508 0.86856 0.98878 1.54409 0.82572 0.82369 0.73040 0.84079 0.81037 0.93167 0.92237 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -7.10 18.54 41.84 0.78 -6.32 16 2 C 0.28 4.48 15.83 -22.47 -0.36 4.13 16 3 C -0.16 -2.24 6.32 -38.24 -0.24 -2.48 16 4 C -0.10 -1.11 10.24 -40.39 -0.41 -1.53 16 5 C -0.02 -0.21 9.77 -41.39 -0.40 -0.61 16 6 C -0.83 -11.70 6.28 29.15 0.18 -11.52 16 7 S 2.72 39.30 5.62 -107.50 -0.60 38.70 16 8 O -0.92 -16.69 17.03 -57.17 -0.97 -17.66 16 9 O -0.95 -13.64 17.74 -57.17 -1.01 -14.65 16 10 N -1.01 -13.04 5.91 31.39 0.19 -12.85 16 11 C 0.27 4.47 7.72 -154.55 -1.19 3.27 16 12 C -0.30 -4.39 10.83 -39.82 -0.43 -4.82 16 13 C 0.07 1.14 11.44 -17.24 -0.20 0.94 16 14 N -0.31 -6.17 3.67 -62.56 -0.23 -6.40 16 15 C 0.26 5.83 6.26 -5.20 -0.03 5.80 16 16 C -0.53 -13.40 9.24 -34.44 -0.32 -13.71 16 17 H 0.07 1.76 7.81 -52.48 -0.41 1.35 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 19 N -0.89 -23.96 13.29 55.43 0.74 -23.22 16 20 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 N -0.31 -6.13 10.51 31.41 0.33 -5.80 16 25 S 0.48 7.90 21.88 -107.50 -2.35 5.54 16 26 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.16 1.31 8.02 -52.49 -0.42 0.88 16 28 H 0.43 3.82 8.95 -34.47 -0.31 3.51 16 29 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 30 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -31.98 337.90 -8.96 -40.94 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.49 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -3.50 Total: -18.80 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 1.80 Total: -54.60 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -1.99 Total: -32.32 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 47.20 SS G_CDS: -2.96 Total: 44.24 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.98 -8.96 -40.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435501726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.778 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds