Wall clock time and date at job start Tue Mar 31 2020 20:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.36628 * 125.45781 * 353.91152 * 3 2 1 5 5 C 1.37615 * 113.27037 * 180.02562 * 4 3 2 6 6 C 1.33716 * 115.09151 * 0.02562 * 5 4 3 7 7 S 1.76199 * 124.50735 * 180.02562 * 6 5 4 8 8 O 1.42105 * 106.40025 * 203.53773 * 7 6 5 9 9 O 1.42101 * 106.40369 * 336.45266 * 7 6 5 10 10 N 1.65603 * 107.22236 * 89.99513 * 7 6 5 11 11 C 1.39988 * 119.99621 * 64.99845 * 10 7 6 12 12 C 1.40423 * 125.97341 * 179.71655 * 11 10 7 13 13 C 1.35254 * 107.86087 * 179.82985 * 12 11 10 14 14 N 1.34955 * 107.86190 * 0.42688 * 13 12 11 15 15 C 1.46501 * 125.97300 * 179.72993 * 14 13 12 16 16 C 1.50691 * 109.47591 * 124.97872 * 15 14 13 17 17 H 1.08003 * 119.99786 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00452 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99552 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47204 * 59.99712 * 20 18 16 22 22 H 1.48504 * 109.46668 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47028 * 299.99242 * 20 18 16 24 24 N 1.31226 * 125.97707 * 0.02625 * 11 10 7 25 25 S 1.70603 * 110.97954 * 359.97438 * 6 5 4 26 26 H 1.07999 * 123.36491 * 0.02562 * 4 3 2 27 27 H 1.08000 * 122.45505 * 179.73076 * 5 4 3 28 28 H 0.96996 * 120.00207 * 244.99635 * 10 7 6 29 29 H 1.08000 * 126.06939 * 359.96442 * 12 11 10 30 30 H 1.08001 * 126.06912 * 180.14067 * 13 12 11 31 31 H 1.09002 * 109.46858 * 244.97915 * 15 14 13 32 32 H 1.09003 * 109.47054 * 4.97695 * 15 14 13 33 33 H 0.97001 * 119.99648 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3611 -1.1056 0.1180 5 6 4.7061 -0.8161 0.0878 6 6 5.0041 0.4802 -0.0495 7 16 6.6421 1.1260 -0.1180 8 8 6.5545 2.4858 0.2855 9 8 7.4758 0.1752 0.5302 10 7 7.0977 1.1391 -1.7101 11 6 6.4303 1.9650 -2.6223 12 6 6.7145 2.0791 -3.9927 13 6 5.8485 2.9725 -4.5230 14 7 5.0515 3.4168 -3.5287 15 6 3.9749 4.4012 -3.6634 16 6 2.6901 3.8160 -3.1367 17 1 2.6766 2.8110 -2.7414 18 6 1.5315 4.5630 -3.1602 19 7 1.5478 5.7866 -3.6420 20 14 -0.0610 3.8377 -2.5066 21 1 0.1078 3.4826 -1.0747 22 1 -1.1522 4.8357 -2.6434 23 1 -0.4045 2.6186 -3.2818 24 7 5.4334 2.7721 -2.3452 25 16 3.5874 1.4253 -0.1508 26 1 2.9714 -2.1072 0.2245 27 1 5.4653 -1.5794 0.1736 28 1 7.8270 0.5746 -2.0105 29 1 7.4861 1.5463 -4.5287 30 1 5.8057 3.2797 -5.5575 31 1 4.2272 5.2957 -3.0938 32 1 3.8511 4.6627 -4.7144 33 1 0.7328 6.3124 -3.6583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435501726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:40 Heat of formation + Delta-G solvation = 52.715794 kcal Electronic energy + Delta-G solvation = -24243.132902 eV Core-core repulsion = 20524.234165 eV Total energy + Delta-G solvation = -3718.898737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 338.029 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.94569 -39.37089 -38.42044 -37.66408 -37.14122 -36.64668 -35.20491 -32.47928 -31.55471 -30.85894 -28.46772 -26.59129 -25.01185 -22.48345 -22.19675 -22.00874 -21.36840 -19.74169 -18.68623 -18.62457 -18.20865 -17.77961 -17.29985 -17.01575 -16.31949 -15.95751 -15.76720 -15.51535 -15.30077 -14.67836 -14.50274 -14.39338 -14.28447 -14.14324 -13.92229 -13.72871 -13.49504 -13.32371 -13.27617 -13.21011 -13.04800 -12.84340 -12.65866 -12.40122 -12.30565 -11.86908 -11.61873 -11.31601 -10.72838 -10.45654 -9.88460 -9.66772 -9.13522 -8.34032 -6.41944 -1.16013 -0.82851 -0.02047 0.58584 1.00043 1.22588 1.24833 1.30005 1.34051 1.46411 1.61668 1.97105 1.99541 2.14518 2.27991 2.53842 2.56341 3.00279 3.35363 3.70828 4.04269 4.14419 4.25384 4.61156 4.64738 4.71250 4.90086 5.00892 5.05493 5.14001 5.15814 5.61300 5.73230 5.91483 6.02672 6.06544 6.34084 6.71098 7.01104 7.26010 8.74373 Molecular weight = 338.03amu Principal moments of inertia in cm(-1) A = 0.009893 B = 0.006563 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.673861 B = 4265.516067 C = 6423.867876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.294 3.706 3 C -0.163 4.163 4 C -0.065 4.065 5 C 0.001 3.999 6 C -0.826 4.826 7 S 2.737 3.263 8 O -0.964 6.964 9 O -0.946 6.946 10 N -0.993 5.993 11 C 0.273 3.727 12 C -0.287 4.287 13 C 0.068 3.932 14 N -0.340 5.340 15 C 0.271 3.729 16 C -0.531 4.531 17 H 0.067 0.933 18 C 0.034 3.966 19 N -0.916 5.916 20 Si 0.926 3.074 21 H -0.279 1.279 22 H -0.274 1.274 23 H -0.272 1.272 24 N -0.351 5.351 25 S 0.372 5.628 26 H 0.202 0.798 27 H 0.202 0.798 28 H 0.452 0.548 29 H 0.184 0.816 30 H 0.205 0.795 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.936 -14.870 1.863 19.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.022 4.022 3 C -0.287 4.287 4 C -0.102 4.102 5 C -0.036 4.036 6 C -1.031 5.031 7 S 2.823 3.177 8 O -0.954 6.954 9 O -0.936 6.936 10 N -0.752 5.752 11 C 0.016 3.984 12 C -0.320 4.320 13 C -0.081 4.081 14 N -0.122 5.122 15 C 0.152 3.848 16 C -0.569 4.569 17 H 0.085 0.915 18 C -0.167 4.167 19 N -0.556 5.556 20 Si 0.753 3.247 21 H -0.205 1.205 22 H -0.199 1.199 23 H -0.197 1.197 24 N -0.182 5.182 25 S 0.647 5.353 26 H 0.219 0.781 27 H 0.219 0.781 28 H 0.293 0.707 29 H 0.202 0.798 30 H 0.222 0.778 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.294 -12.146 3.344 15.655 hybrid contribution -0.353 -1.942 -0.576 2.056 sum 8.941 -14.088 2.768 16.914 Atomic orbital electron populations 1.81278 1.12243 1.07764 1.09918 1.24510 0.91294 0.93442 0.92945 1.21447 0.89102 1.02245 1.15892 1.21301 0.91368 0.99541 0.98030 1.20125 0.97696 0.93365 0.92386 1.35285 1.28674 1.10577 1.28596 1.00723 0.72177 0.72983 0.71771 1.93634 1.86441 1.35183 1.80120 1.93603 1.64744 1.63454 1.71767 1.52304 1.45011 1.52035 1.25805 1.19008 0.94276 0.93955 0.91120 1.21310 1.09149 1.10074 0.91475 1.23186 0.91740 0.96612 0.96586 1.48746 1.26930 1.32644 1.03845 1.19333 0.82053 0.84910 0.98503 1.21452 0.92925 1.01227 1.41314 0.91523 1.25334 1.00957 0.95001 0.95419 1.69938 1.29611 1.09689 1.46358 0.86091 0.80772 0.78801 0.79086 1.20477 1.19895 1.19750 1.77274 1.17476 1.14416 1.09024 1.84954 0.89991 1.01966 1.58400 0.78146 0.78068 0.70655 0.79832 0.77844 0.96156 0.91848 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -15.66 18.54 19.01 0.35 -15.31 16 2 C 0.29 9.37 15.83 88.33 1.40 10.77 16 3 C -0.16 -4.47 6.32 23.14 0.15 -4.32 16 4 C -0.07 -1.19 10.24 21.75 0.22 -0.97 16 5 C 0.00 0.02 9.77 21.09 0.21 0.23 16 6 C -0.83 -21.67 6.28 66.79 0.42 -21.25 16 7 S 2.74 74.41 5.62 -56.49 -0.32 74.10 16 8 O -0.96 -35.28 17.03 -128.00 -2.18 -37.46 16 9 O -0.95 -24.30 17.74 -128.00 -2.27 -26.57 16 10 N -0.99 -23.04 5.91 -54.61 -0.32 -23.36 16 11 C 0.27 8.42 7.72 133.39 1.03 9.45 16 12 C -0.29 -7.39 10.83 22.11 0.24 -7.16 16 13 C 0.07 2.01 11.44 83.52 0.96 2.96 16 14 N -0.34 -13.59 3.67 -351.85 -1.29 -14.88 16 15 C 0.27 12.72 6.26 85.63 0.54 13.25 16 16 C -0.53 -27.53 9.24 25.60 0.24 -27.29 16 17 H 0.07 3.45 7.81 -2.91 -0.02 3.43 16 18 C 0.03 1.80 5.46 84.66 0.46 2.26 16 19 N -0.92 -50.67 13.29 21.45 0.28 -50.39 16 20 Si 0.93 43.94 29.54 68.60 2.03 45.96 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 24 N -0.35 -13.90 10.51 -54.55 -0.57 -14.48 16 25 S 0.37 12.46 21.88 -56.49 -1.24 11.23 16 26 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 27 H 0.20 2.02 8.02 -2.91 -0.02 1.99 16 28 H 0.45 6.29 8.95 -96.75 -0.87 5.42 16 29 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 30 H 0.20 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 2.88 8.07 -2.39 -0.02 2.86 16 33 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -72.91 337.90 0.65 -72.26 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 0.33 Total: 0.96 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: 5.85 Total: -22.06 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -1.55 Total: -118.42 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -4.45 Total: -64.03 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 86.88 SS G_CDS: -1.55 Total: 85.32 kcal Total: -72.91 0.65 -72.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435501726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.973 kcal (2) G-P(sol) polarization free energy of solvation -72.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds