Wall clock time and date at job start Tue Mar 31 2020 20:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47346 * 300.00568 * 3 2 1 6 6 H 1.48506 * 109.46753 * 60.00668 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 H 1.09004 * 109.45680 * 59.99952 * 12 10 9 14 14 C 1.52910 * 109.45922 * 300.02871 * 12 10 9 15 15 C 1.50495 * 109.90753 * 288.55852 * 14 12 10 16 16 O 1.21285 * 119.61629 * 144.81097 * 15 14 12 17 17 N 1.34563 * 120.76565 * 324.79662 * 15 14 12 18 18 C 1.39859 * 120.45376 * 0.85479 * 17 15 14 19 19 C 1.38859 * 120.17609 * 198.45131 * 18 17 15 20 20 C 1.38107 * 119.90249 * 179.97438 * 19 18 17 21 21 C 1.38376 * 120.07965 * 0.02562 * 20 19 18 22 22 Br 1.89105 * 119.93691 * 179.97438 * 21 20 19 23 23 C 1.38362 * 120.12901 * 359.97438 * 21 20 19 24 24 C 1.38095 * 120.00970 * 0.02562 * 23 21 20 25 25 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.39958 * 48.69256 * 14 12 10 28 28 H 1.08998 * 109.39899 * 168.42561 * 14 12 10 29 29 H 0.97004 * 119.77314 * 180.83296 * 17 15 14 30 30 H 1.07996 * 120.05170 * 0.02562 * 19 18 17 31 31 H 1.07997 * 119.96081 * 180.02562 * 20 19 18 32 32 H 1.08008 * 119.99300 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2127 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 1 0.6165 -4.9160 -0.9031 14 6 0.3645 -4.9497 1.2352 15 6 1.2233 -5.1582 2.4533 16 8 0.9039 -4.6482 3.5063 17 7 2.3414 -5.9041 2.3877 18 6 2.7355 -6.4858 1.1785 19 6 3.6388 -7.5404 1.1730 20 6 4.0238 -8.1110 -0.0244 21 6 3.5109 -7.6325 -1.2172 22 35 4.0413 -8.4163 -2.8544 23 6 2.6107 -6.5818 -1.2144 24 6 2.2227 -6.0079 -0.0198 25 1 -0.4850 0.8401 0.0004 26 1 0.3532 -2.3907 -0.0005 27 1 -0.2008 -4.0242 1.3449 28 1 -0.3279 -5.7853 1.1331 29 1 2.8778 -6.0390 3.1846 30 1 4.0391 -7.9145 2.1036 31 1 4.7259 -8.9315 -0.0298 32 1 2.2115 -6.2104 -2.1467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000446032990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:27 Heat of formation + Delta-G solvation = -48.399198 kcal Electronic energy + Delta-G solvation = -20982.113975 eV Core-core repulsion = 17567.313549 eV Total energy + Delta-G solvation = -3414.800426 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.13041 -38.64643 -38.12221 -35.28131 -34.13880 -33.65674 -31.48262 -31.32650 -30.05682 -28.36524 -25.87296 -24.40569 -22.82926 -22.52978 -20.32626 -18.56244 -18.12062 -17.85267 -17.08337 -16.24977 -15.52447 -15.40732 -14.74344 -14.59611 -14.53974 -13.99641 -13.86201 -13.59509 -13.26723 -13.07316 -12.57483 -12.16607 -11.88998 -11.63503 -11.46115 -11.31438 -11.17170 -11.10586 -10.38372 -10.31425 -10.25784 -10.04597 -9.88741 -9.59822 -9.01675 -8.47224 -8.05924 -7.93967 -6.49249 -3.90175 0.99859 1.24221 1.64163 2.61472 3.09029 3.12280 3.24311 3.31121 3.61041 3.70813 4.12829 4.39969 4.61708 4.67912 4.81310 4.92963 5.06868 5.20080 5.23718 5.34028 5.48590 5.74966 5.78463 5.82318 5.95864 6.06164 6.23054 6.24368 6.60173 6.81601 7.17933 7.48987 7.95584 8.08689 8.48991 9.08851 9.41941 9.91590 10.67944 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.003832 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.879309 B = 7306.007075 C = 8586.831748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.552 5.552 10 C 0.437 3.563 11 O -0.581 6.581 12 C -0.063 4.063 13 H 0.112 0.888 14 C -0.133 4.133 15 C 0.529 3.471 16 O -0.521 6.521 17 N -0.660 5.660 18 C 0.194 3.806 19 C -0.152 4.152 20 C -0.063 4.063 21 C -0.115 4.115 22 Br -0.059 7.059 23 C -0.042 4.042 24 C -0.074 4.074 25 H 0.273 0.727 26 H 0.393 0.607 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.410 0.590 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.706 -18.867 -3.093 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.187 5.187 10 C 0.222 3.778 11 O -0.466 6.466 12 C -0.085 4.085 13 H 0.130 0.870 14 C -0.173 4.173 15 C 0.318 3.682 16 O -0.395 6.395 17 N -0.303 5.303 18 C 0.096 3.904 19 C -0.174 4.174 20 C -0.083 4.083 21 C -0.195 4.195 22 Br 0.026 6.974 23 C -0.062 4.062 24 C -0.078 4.078 25 H 0.083 0.917 26 H 0.227 0.773 27 H 0.136 0.864 28 H 0.126 0.874 29 H 0.248 0.752 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.229 -18.599 -3.215 19.149 hybrid contribution 0.016 1.031 0.628 1.207 sum 3.245 -17.569 -2.588 18.052 Atomic orbital electron populations 1.69609 1.05956 1.28325 1.49762 1.25282 0.95652 0.99812 0.96898 0.85793 0.79733 0.80991 0.77812 1.19190 1.20612 1.20617 1.19755 0.93418 0.82032 1.47890 0.87796 1.41843 1.09225 1.04495 1.63182 1.19486 0.88224 0.84192 0.85887 1.90559 1.13414 1.86796 1.55792 1.20205 0.95676 0.93365 0.99287 0.87042 1.21788 0.97860 1.06439 0.91190 1.20646 0.80662 0.76210 0.90712 1.90770 1.70797 1.46424 1.31535 1.43567 1.25917 1.50148 1.10688 1.17649 0.95032 0.92389 0.85293 1.20651 1.00999 0.97035 0.98728 1.20789 0.98222 0.99103 0.90192 1.21524 1.04528 1.01891 0.91551 1.96663 1.91037 1.81903 1.27774 1.20730 0.94742 0.92980 0.97797 1.18951 1.00645 0.96872 0.91325 0.91715 0.77349 0.86403 0.87385 0.75192 0.84744 0.84760 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.91 13.05 55.50 0.72 -23.18 16 2 C 0.03 0.69 5.50 -17.46 -0.10 0.59 16 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.53 5.09 -10.96 -0.06 -13.59 16 10 C 0.44 9.86 6.75 -10.98 -0.07 9.78 16 11 O -0.58 -15.25 15.61 5.55 0.09 -15.17 16 12 C -0.06 -1.03 2.76 -92.99 -0.26 -1.29 16 13 H 0.11 1.51 8.06 -51.93 -0.42 1.09 16 14 C -0.13 -1.99 5.49 -28.03 -0.15 -2.14 16 15 C 0.53 9.12 7.37 -11.18 -0.08 9.03 16 16 O -0.52 -10.65 17.91 5.55 0.10 -10.55 16 17 N -0.66 -9.78 5.36 -10.01 -0.05 -9.84 16 18 C 0.19 2.78 6.50 -83.75 -0.54 2.24 16 19 C -0.15 -1.77 9.92 -39.40 -0.39 -2.16 16 20 C -0.06 -0.71 9.78 -39.58 -0.39 -1.09 16 21 C -0.11 -1.45 6.23 -39.48 -0.25 -1.70 16 22 Br -0.06 -0.66 33.70 -68.01 -2.29 -2.95 16 23 C -0.04 -0.59 9.43 -39.59 -0.37 -0.96 16 24 C -0.07 -1.14 4.15 -104.48 -0.43 -1.57 16 25 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.39 9.13 7.22 -40.82 -0.29 8.83 16 27 H 0.12 1.88 7.27 -51.93 -0.38 1.50 16 28 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.41 5.22 8.83 -40.82 -0.36 4.86 16 30 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 304.32 15.07 4.59 4.59 Total: -1.00 -32.89 304.32 -7.76 -40.66 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -2.65 Total: 11.84 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -3.18 Total: 2.31 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 0.61 Total: -46.61 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: 0.19 Total: -25.72 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -2.29 Total: -2.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.89 -7.76 -40.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446032990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.741 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds