Wall clock time and date at job start Tue Mar 31 2020 20:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 120.00342 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47346 * 300.00568 * 3 2 1 6 6 H 1.48506 * 109.46753 * 60.00668 * 3 2 1 7 7 C 1.38958 * 119.99347 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99408 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00096 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99729 * 179.72242 * 9 7 2 11 11 O 1.21293 * 120.00229 * 0.27992 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.27555 * 10 9 7 13 13 H 1.09004 * 109.45680 * 59.99952 * 12 10 9 14 14 C 1.52910 * 109.45922 * 300.02871 * 12 10 9 15 15 C 1.50495 * 109.90753 * 288.55852 * 14 12 10 16 16 O 1.21285 * 119.61629 * 144.81097 * 15 14 12 17 17 N 1.34563 * 120.76565 * 324.79662 * 15 14 12 18 18 C 1.39859 * 120.45376 * 0.85479 * 17 15 14 19 19 C 1.38859 * 120.17609 * 198.45131 * 18 17 15 20 20 C 1.38107 * 119.90249 * 179.97438 * 19 18 17 21 21 C 1.38376 * 120.07965 * 0.02562 * 20 19 18 22 22 Br 1.89105 * 119.93691 * 179.97438 * 21 20 19 23 23 C 1.38362 * 120.12901 * 359.97438 * 21 20 19 24 24 C 1.38095 * 120.00970 * 0.02562 * 23 21 20 25 25 H 0.97004 * 119.99790 * 359.97438 * 1 2 3 26 26 H 0.97001 * 120.00484 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.39958 * 48.69256 * 14 12 10 28 28 H 1.08998 * 109.39899 * 168.42561 * 14 12 10 29 29 H 0.97004 * 119.77314 * 180.83296 * 17 15 14 30 30 H 1.07996 * 120.05170 * 0.02562 * 19 18 17 31 31 H 1.07997 * 119.96081 * 180.02562 * 20 19 18 32 32 H 1.08008 * 119.99300 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8896 2.3963 1.2127 7 6 2.0088 -1.2035 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9970 -3.5579 -0.0067 11 8 3.2100 -3.5580 -0.0071 12 6 1.2435 -4.8630 -0.0130 13 1 0.6165 -4.9160 -0.9031 14 6 0.3645 -4.9497 1.2352 15 6 1.2233 -5.1582 2.4533 16 8 0.9039 -4.6482 3.5063 17 7 2.3414 -5.9041 2.3877 18 6 2.7355 -6.4858 1.1785 19 6 3.6388 -7.5404 1.1730 20 6 4.0238 -8.1110 -0.0244 21 6 3.5109 -7.6325 -1.2172 22 35 4.0413 -8.4163 -2.8544 23 6 2.6107 -6.5818 -1.2144 24 6 2.2227 -6.0079 -0.0198 25 1 -0.4850 0.8401 0.0004 26 1 0.3532 -2.3907 -0.0005 27 1 -0.2008 -4.0242 1.3449 28 1 -0.3279 -5.7853 1.1331 29 1 2.8778 -6.0390 3.1846 30 1 4.0391 -7.9145 2.1036 31 1 4.7259 -8.9315 -0.0298 32 1 2.2115 -6.2104 -2.1467 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000446032990.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:27 Heat of formation + Delta-G solvation = -71.339699 kcal Electronic energy + Delta-G solvation = -20983.108750 eV Core-core repulsion = 17567.313549 eV Total energy + Delta-G solvation = -3415.795201 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.36771 -40.01484 -39.69615 -36.49911 -36.03015 -35.04461 -33.23384 -32.46798 -31.19827 -29.40901 -27.58188 -25.94811 -23.97114 -23.61865 -21.89916 -20.20047 -19.71788 -19.05418 -18.44378 -17.69287 -17.02494 -16.73989 -16.31731 -15.91345 -15.71705 -15.67451 -15.32874 -14.80817 -14.66055 -14.40113 -13.72104 -13.58393 -13.52236 -13.19384 -12.92460 -12.55842 -12.50394 -12.37526 -12.25820 -12.12815 -11.54979 -11.25059 -11.20697 -11.05309 -10.43932 -10.04748 -9.91234 -9.03169 -8.50033 -5.98615 -0.07017 0.23700 0.68280 1.33352 1.35712 1.39847 1.53240 1.92387 1.98118 2.26090 2.54911 3.13255 3.21365 3.26340 3.44709 3.66124 3.78426 4.10766 4.17320 4.24767 4.32193 4.47220 4.59892 4.74071 4.88680 4.96585 5.06005 5.19841 5.38561 5.55452 5.71112 5.94591 6.00948 6.53337 6.84763 7.08169 7.49650 8.03893 8.67037 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.014765 B = 0.003832 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.879309 B = 7306.007075 C = 8586.831748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.009 4.009 3 Si 0.989 3.011 4 H -0.275 1.275 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.334 4.334 8 H 0.077 0.923 9 N -0.564 5.564 10 C 0.439 3.561 11 O -0.621 6.621 12 C -0.051 4.051 13 H 0.142 0.858 14 C -0.129 4.129 15 C 0.520 3.480 16 O -0.566 6.566 17 N -0.653 5.653 18 C 0.173 3.827 19 C -0.141 4.141 20 C -0.056 4.056 21 C -0.121 4.121 22 Br -0.045 7.045 23 C -0.052 4.052 24 C -0.097 4.097 25 H 0.279 0.721 26 H 0.397 0.603 27 H 0.105 0.895 28 H 0.154 0.846 29 H 0.418 0.582 30 H 0.167 0.833 31 H 0.165 0.835 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 -20.496 -3.595 21.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.813 3.187 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.095 0.905 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.507 6.507 12 C -0.073 4.073 13 H 0.160 0.840 14 C -0.169 4.169 15 C 0.310 3.690 16 O -0.444 6.444 17 N -0.296 5.296 18 C 0.076 3.924 19 C -0.162 4.162 20 C -0.076 4.076 21 C -0.201 4.201 22 Br 0.040 6.960 23 C -0.072 4.072 24 C -0.100 4.100 25 H 0.088 0.912 26 H 0.232 0.768 27 H 0.123 0.877 28 H 0.172 0.828 29 H 0.257 0.743 30 H 0.185 0.815 31 H 0.183 0.817 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.583 -20.265 -3.746 20.918 hybrid contribution 0.007 1.386 0.719 1.562 sum 3.590 -18.879 -3.028 19.454 Atomic orbital electron populations 1.69661 1.06724 1.29344 1.49795 1.26001 0.96529 1.02301 0.96098 0.84925 0.78036 0.77327 0.78400 1.19928 1.19203 1.19844 1.19660 0.92611 0.83973 1.50113 0.90462 1.41898 1.09364 1.04590 1.64187 1.20582 0.88116 0.85680 0.83036 1.90520 1.15579 1.87837 1.56813 1.20120 0.95906 0.90003 1.01260 0.83990 1.21820 0.97847 1.07725 0.89460 1.21068 0.81315 0.75882 0.90758 1.90744 1.72099 1.48475 1.33080 1.43479 1.25272 1.49417 1.11435 1.17912 0.96244 0.93608 0.84592 1.21029 0.99306 0.95535 1.00360 1.21193 0.97768 0.99249 0.89385 1.21745 1.04046 1.01524 0.92799 1.96683 1.90798 1.81455 1.27087 1.20844 0.95277 0.93565 0.97551 1.18959 1.01560 0.97143 0.92372 0.91178 0.76845 0.87664 0.82805 0.74298 0.81528 0.81739 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.05 13.05 21.67 0.28 -48.77 16 2 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 3 Si 0.99 43.18 29.55 68.60 2.03 45.21 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 7 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.56 -28.38 5.09 -306.98 -1.56 -29.94 16 10 C 0.44 20.09 6.75 87.66 0.59 20.68 16 11 O -0.62 -33.36 15.61 -3.07 -0.05 -33.40 16 12 C -0.05 -1.63 2.76 -12.33 -0.03 -1.67 16 13 H 0.14 3.60 8.06 -2.39 -0.02 3.58 16 14 C -0.13 -3.75 5.49 29.75 0.16 -3.58 16 15 C 0.52 17.85 7.37 87.63 0.65 18.50 16 16 O -0.57 -23.62 17.91 -3.05 -0.05 -23.68 16 17 N -0.65 -18.81 5.36 -304.08 -1.63 -20.44 16 18 C 0.17 4.67 6.50 38.15 0.25 4.91 16 19 C -0.14 -2.84 9.92 22.39 0.22 -2.62 16 20 C -0.06 -1.07 9.78 22.27 0.22 -0.85 16 21 C -0.12 -2.76 6.23 22.33 0.14 -2.62 16 22 Br -0.05 -0.92 33.70 -20.37 -0.69 -1.60 16 23 C -0.05 -1.37 9.43 22.27 0.21 -1.16 16 24 C -0.10 -2.83 4.15 -19.77 -0.08 -2.91 16 25 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 26 H 0.40 18.89 7.22 -92.71 -0.67 18.22 16 27 H 0.10 3.37 7.27 -2.39 -0.02 3.35 16 28 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.42 10.32 8.83 -92.71 -0.82 9.50 16 30 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 31 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -73.02 304.32 1.64 -71.37 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.29 Total: 30.67 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 3.60 Total: 10.59 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -2.91 Total: -99.15 kcal Atomic # 8 Polarization: -56.98 SS G_CDS: -0.10 Total: -57.08 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -0.69 Total: -1.60 kcal Total: -73.02 1.64 -71.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000446032990.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.033 kcal (2) G-P(sol) polarization free energy of solvation -73.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds