Wall clock time and date at job start Tue Mar 31 2020 20:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39817 * 120.20142 * 224.44380 * 3 2 1 5 5 Br 1.89105 * 120.05867 * 0.04325 * 4 3 2 6 6 C 1.37942 * 119.87625 * 180.02562 * 4 3 2 7 7 C 1.38465 * 120.28788 * 359.97438 * 6 4 3 8 8 C 1.38131 * 120.40805 * 0.02562 * 7 6 4 9 9 C 1.38625 * 120.11439 * 359.97438 * 8 7 6 10 10 O 1.35711 * 120.14454 * 179.72974 * 9 8 7 11 11 C 1.42908 * 116.99675 * 359.97438 * 10 9 8 12 12 C 1.50702 * 109.46895 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99996 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99942 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00185 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47391 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00202 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99929 * 179.97438 * 16 15 14 19 19 N 1.31507 * 120.00358 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99871 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47126 * 59.99805 * 20 18 16 22 22 H 1.48496 * 109.47362 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47163 * 299.99817 * 20 18 16 24 24 H 1.08002 * 119.85917 * 180.02562 * 6 4 3 25 25 H 1.08005 * 119.79819 * 179.97438 * 7 6 4 26 26 H 1.07997 * 119.94468 * 179.97438 * 8 7 6 27 27 H 1.09000 * 109.47198 * 300.00409 * 11 10 9 28 28 H 1.08993 * 109.46547 * 60.00564 * 11 10 9 29 29 H 0.97002 * 119.99734 * 0.02562 * 14 12 11 30 30 H 1.09006 * 109.47209 * 300.00223 * 15 14 12 31 31 H 1.08999 * 109.47147 * 59.99685 * 15 14 12 32 32 H 0.97003 * 120.00431 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 0.8637 0.8461 5 35 2.3323 2.0346 1.9967 6 6 4.6503 0.8591 0.8403 7 6 5.3422 0.0029 0.0003 8 6 4.6597 -0.8546 -0.8404 9 6 3.2735 -0.8640 -0.8483 10 8 2.6024 -1.7023 -1.6780 11 6 3.3882 -2.5495 -2.5188 12 6 2.4777 -3.4028 -3.3638 13 8 1.2744 -3.2956 -3.2569 14 7 3.0007 -4.2850 -4.2382 15 6 2.1157 -5.1141 -5.0600 16 6 2.9443 -6.0075 -5.9466 17 1 4.0225 -5.9627 -5.9020 18 6 2.3261 -6.8831 -6.8139 19 7 1.0133 -6.9389 -6.8671 20 14 3.3533 -7.9911 -7.9123 21 1 4.2106 -8.8646 -7.0713 22 1 2.4562 -8.8324 -8.7446 23 1 4.2098 -7.1578 -8.7939 24 1 5.1930 1.5255 1.4943 25 1 6.4223 0.0062 0.0019 26 1 5.2070 -1.5189 -1.4928 27 1 4.0163 -1.9374 -3.1661 28 1 4.0181 -3.1903 -1.9018 29 1 3.9631 -4.3709 -4.3234 30 1 1.4866 -5.7258 -4.4132 31 1 1.4867 -4.4727 -5.6774 32 1 0.5783 -7.5546 -7.4776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451239833.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:28 Heat of formation + Delta-G solvation = -39.941050 kcal Electronic energy + Delta-G solvation = -19431.021130 eV Core-core repulsion = 16016.587477 eV Total energy + Delta-G solvation = -3414.433653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 338.005 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.69709 -40.42708 -38.67962 -37.53098 -36.20449 -34.42218 -33.44100 -32.29008 -30.52485 -30.18259 -28.36336 -24.99601 -24.78585 -23.19087 -21.62531 -20.46403 -19.09718 -18.80714 -17.81026 -17.53574 -17.04190 -16.94341 -16.19487 -15.96440 -15.91239 -15.41974 -15.07978 -14.81271 -14.27145 -14.15275 -14.04254 -13.94483 -13.80857 -13.60278 -12.95885 -12.77626 -12.68453 -12.51729 -12.32813 -12.21840 -11.66011 -11.52491 -11.43792 -10.89081 -10.80293 -10.00603 -9.92852 -9.44372 -8.29067 -6.46493 -0.48193 0.09817 0.33988 1.44056 1.49048 1.53617 1.55602 1.58690 1.59611 1.83808 2.37145 2.62368 2.73325 2.75108 3.06422 3.60200 3.89439 3.90294 4.04360 4.06906 4.14389 4.26151 4.35427 4.95341 5.07523 5.08711 5.20324 5.24562 5.42684 5.45630 5.64041 5.82051 6.06356 6.38117 6.63877 6.81171 7.22489 7.41524 8.83046 Molecular weight = 338.01amu Principal moments of inertia in cm(-1) A = 0.035458 B = 0.002136 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.485232 B =13103.971415 C =13872.984121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.266 3.734 3 C -0.072 4.072 4 C -0.023 4.023 5 Br -0.037 7.037 6 C -0.118 4.118 7 C -0.018 4.018 8 C -0.186 4.186 9 C 0.171 3.829 10 O -0.322 6.322 11 C 0.050 3.950 12 C 0.490 3.510 13 O -0.598 6.598 14 N -0.695 5.695 15 C 0.265 3.735 16 C -0.554 4.554 17 H 0.092 0.908 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.987 3.013 21 H -0.259 1.259 22 H -0.291 1.291 23 H -0.259 1.259 24 H 0.175 0.825 25 H 0.194 0.806 26 H 0.183 0.817 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.416 0.584 30 H -0.014 1.014 31 H -0.014 1.014 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.033 18.632 18.411 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.049 4.049 3 C -0.078 4.078 4 C -0.105 4.105 5 Br 0.049 6.951 6 C -0.138 4.138 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.121 3.879 10 O -0.234 6.234 11 C -0.027 4.027 12 C 0.277 3.723 13 O -0.479 6.479 14 N -0.346 5.346 15 C 0.143 3.857 16 C -0.591 4.591 17 H 0.110 0.890 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.810 3.190 21 H -0.184 1.184 22 H -0.216 1.216 23 H -0.184 1.184 24 H 0.192 0.808 25 H 0.211 0.789 26 H 0.201 0.799 27 H 0.161 0.839 28 H 0.161 0.839 29 H 0.254 0.746 30 H 0.004 0.996 31 H 0.004 0.996 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.699 19.022 18.796 31.528 hybrid contribution 0.117 -1.057 -1.040 1.488 sum 16.816 17.965 17.756 30.345 Atomic orbital electron populations 1.81176 1.13467 1.09154 1.09200 1.25771 0.93120 0.92997 0.92998 1.15292 0.83399 1.04299 1.04853 1.21739 0.95924 0.96278 0.96570 1.96824 1.76568 1.60227 1.61493 1.21464 0.89535 1.01411 1.01390 1.21776 1.02894 0.89496 0.89506 1.21870 0.89857 1.04323 1.04385 1.19139 0.92092 0.88256 0.88436 1.86150 1.36867 1.49860 1.50483 1.22841 0.92158 0.93744 0.93979 1.21065 0.89044 0.81159 0.81075 1.90732 1.18520 1.69471 1.69143 1.45953 1.11590 1.38251 1.38851 1.18581 0.89950 0.88556 0.88646 1.21593 0.94452 1.21271 1.21808 0.88962 1.26123 0.96180 0.98822 0.98756 1.70146 1.10599 1.38186 1.38377 0.85174 0.77861 0.77979 0.78012 1.18369 1.21638 1.18355 0.80782 0.78875 0.79934 0.83893 0.83884 0.74639 0.99581 0.99583 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -17.18 18.54 19.00 0.35 -16.83 16 2 C 0.27 8.53 13.74 88.33 1.21 9.74 16 3 C -0.07 -1.66 5.75 -21.18 -0.12 -1.78 16 4 C -0.02 -0.37 6.25 22.58 0.14 -0.23 16 5 Br -0.04 -0.67 32.64 -20.37 -0.66 -1.33 16 6 C -0.12 -0.88 9.76 22.25 0.22 -0.67 16 7 C -0.02 -0.06 10.03 22.30 0.22 0.16 16 8 C -0.19 -1.55 9.03 22.34 0.20 -1.34 16 9 C 0.17 3.39 6.69 22.83 0.15 3.54 16 10 O -0.32 -9.06 9.10 -71.29 -0.65 -9.71 16 11 C 0.05 1.05 5.22 71.24 0.37 1.42 16 12 C 0.49 18.49 7.91 87.66 0.69 19.19 16 13 O -0.60 -31.05 16.50 16.01 0.26 -30.78 16 14 N -0.69 -26.55 5.55 -466.80 -2.59 -29.14 16 15 C 0.27 14.13 5.43 85.63 0.46 14.59 16 16 C -0.55 -28.71 9.28 25.60 0.24 -28.47 16 17 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 18 C 0.00 0.03 5.46 84.66 0.46 0.50 16 19 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 20 Si 0.99 40.85 29.54 68.60 2.03 42.88 16 21 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 22 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 24 H 0.17 0.32 8.06 -2.91 -0.02 0.30 16 25 H 0.19 -1.03 8.06 -2.91 -0.02 -1.05 16 26 H 0.18 0.24 6.30 -2.91 -0.02 0.22 16 27 H 0.14 1.69 7.67 -2.39 -0.02 1.68 16 28 H 0.14 1.69 7.66 -2.39 -0.02 1.67 16 29 H 0.42 11.65 8.32 -92.71 -0.77 10.88 16 30 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 31 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -87.45 319.26 3.70 -83.75 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: 0.42 Total: 0.32 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 4.26 Total: 16.65 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -1.95 Total: -101.77 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -0.38 Total: -40.49 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -0.66 Total: -1.33 kcal Total: -87.45 3.70 -83.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451239833.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.814 kcal (2) G-P(sol) polarization free energy of solvation -87.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds