Wall clock time and date at job start Tue Mar 31 2020 21:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99712 * 2 1 4 4 C 1.52993 * 109.47139 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47439 * 64.99573 * 4 3 2 6 6 C 1.36938 * 119.99978 * 275.38173 * 5 4 3 7 7 H 1.07999 * 119.99988 * 41.97730 * 6 5 4 8 8 C 1.38815 * 120.00060 * 221.96510 * 6 5 4 9 9 N 1.31618 * 119.99963 * 12.18708 * 8 6 5 10 10 Si 1.86800 * 120.00134 * 192.17511 * 8 6 5 11 11 H 1.48507 * 109.46744 * 90.00396 * 10 8 6 12 12 H 1.48491 * 109.47580 * 210.00714 * 10 8 6 13 13 H 1.48497 * 109.47231 * 330.01153 * 10 8 6 14 14 C 1.46508 * 120.00066 * 95.38656 * 5 4 3 15 15 C 1.50707 * 109.46698 * 276.52408 * 14 5 4 16 16 C 1.37929 * 119.92447 * 98.66874 * 15 14 5 17 17 C 1.39643 * 119.84924 * 179.75122 * 16 15 14 18 18 C 1.43195 * 120.13497 * 180.24827 * 17 16 15 19 19 N 6.76874 * 82.49503 * 330.74755 * 2 1 3 20 20 C 1.39675 * 119.72009 * 0.51941 * 17 16 15 21 21 C 1.37883 * 119.85651 * 359.72677 * 20 17 16 22 22 C 1.38450 * 119.92739 * 278.93826 * 15 14 5 23 23 Br 1.89099 * 119.85871 * 0.02776 * 22 15 14 24 24 H 1.08996 * 109.47482 * 299.99932 * 1 2 3 25 25 H 1.09000 * 109.47491 * 60.00459 * 1 2 3 26 26 H 1.09006 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47147 * 59.99600 * 3 2 1 28 28 H 1.09003 * 109.46784 * 300.00113 * 3 2 1 29 29 H 1.09002 * 109.46859 * 304.99180 * 4 3 2 30 30 H 1.09000 * 109.47099 * 184.99966 * 4 3 2 31 31 H 0.97003 * 120.00043 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.46829 * 36.52372 * 14 5 4 33 33 H 1.08996 * 109.46932 * 156.52552 * 14 5 4 34 34 H 1.07998 * 120.07420 * 359.97438 * 16 15 14 35 35 H 1.07999 * 120.07139 * 179.71217 * 20 17 16 36 36 H 1.08001 * 119.92956 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2526 6 6 3.9914 -0.7996 -1.3724 7 1 3.1728 -1.3855 -0.9814 8 6 5.0595 -1.4292 -1.9968 9 7 6.1594 -0.7552 -2.2580 10 14 4.9358 -3.2331 -2.4659 11 1 4.3851 -3.3505 -3.8400 12 1 6.2855 -3.8505 -2.4190 13 1 4.0383 -3.9323 -1.5116 14 6 4.3992 1.4035 -2.3765 15 6 3.1880 1.8504 -3.1541 16 6 2.6562 3.1046 -2.9385 17 6 1.5371 3.5191 -3.6636 18 6 0.9832 4.8219 -3.4486 19 7 0.5449 5.8550 -3.2793 20 6 0.9569 2.6553 -4.5954 21 6 1.4952 1.4021 -4.7978 22 6 2.6083 0.9989 -4.0792 23 35 3.3391 -0.7221 -4.3621 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8513 0.5684 0.8410 30 1 3.9783 2.1766 0.0889 31 1 6.9059 -1.1953 -2.6939 32 1 4.9305 2.2767 -1.9980 33 1 5.0589 0.8312 -3.0287 34 1 3.1065 3.7660 -2.2132 35 1 0.0885 2.9682 -5.1560 36 1 1.0472 0.7331 -5.5177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459533011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:10 Heat of formation + Delta-G solvation = 41.518755 kcal Electronic energy + Delta-G solvation = -21819.259589 eV Core-core repulsion = 18544.191393 eV Total energy + Delta-G solvation = -3275.068197 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.33053 -37.35643 -36.45932 -35.33516 -32.03371 -31.79104 -31.16994 -29.09459 -28.38678 -25.79668 -25.61973 -23.33753 -23.10821 -21.62691 -20.41265 -18.02715 -16.72282 -15.85576 -15.67641 -15.53746 -15.29780 -14.56593 -14.38301 -14.14242 -13.95643 -13.51029 -13.29668 -13.01215 -12.91431 -12.71379 -12.20587 -12.09218 -11.80493 -11.45108 -11.15710 -10.94828 -10.86852 -10.75668 -10.44567 -10.36149 -10.10143 -9.99575 -9.89681 -9.14362 -9.04275 -8.54031 -8.24461 -8.01222 -6.52555 -5.77408 -3.31969 0.88672 1.57165 2.40431 2.72467 3.05156 3.29733 3.43863 3.47340 3.99577 4.02185 4.49151 4.49658 5.03114 5.04362 5.40705 5.46025 5.52041 5.64194 5.67148 5.72713 5.83151 5.97225 6.03292 6.09417 6.14185 6.19116 6.29776 6.38034 6.41709 6.52240 6.87060 6.99352 7.01365 7.52254 7.55939 7.86167 8.00948 8.62515 9.23562 9.80636 10.38833 11.26760 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.006836 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.914996 B = 4094.881589 C = 4949.699403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.040 3.960 4 C 0.146 3.854 5 N -0.560 5.560 6 C -0.233 4.233 7 H 0.071 0.929 8 C 0.032 3.968 9 N -0.889 5.889 10 Si 0.874 3.126 11 H -0.282 1.282 12 H -0.291 1.291 13 H -0.274 1.274 14 C 0.163 3.837 15 C -0.054 4.054 16 C -0.073 4.073 17 C -0.035 4.035 18 C 0.266 3.734 19 N -0.436 5.436 20 C -0.090 4.090 21 C -0.103 4.103 22 C -0.051 4.051 23 Br -0.007 7.007 24 H 0.027 0.973 25 H 0.031 0.969 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.040 0.960 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.254 0.746 32 H 0.038 0.962 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 2.923 -3.765 8.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C -0.039 4.039 4 C 0.020 3.980 5 N -0.277 5.277 6 C -0.362 4.362 7 H 0.088 0.912 8 C -0.168 4.168 9 N -0.532 5.532 10 Si 0.704 3.296 11 H -0.210 1.210 12 H -0.217 1.217 13 H -0.199 1.199 14 C 0.036 3.964 15 C -0.059 4.059 16 C -0.096 4.096 17 C -0.039 4.039 18 C -0.049 4.049 19 N -0.111 5.111 20 C -0.113 4.113 21 C -0.123 4.123 22 C -0.132 4.132 23 Br 0.079 6.921 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.206 3.601 -3.619 8.831 hybrid contribution -0.571 -0.644 -0.376 0.940 sum -7.777 2.956 -3.994 9.229 Atomic orbital electron populations 1.22617 0.83646 1.01633 0.98605 1.88111 1.17192 1.27686 1.94947 1.23488 0.98147 0.84475 0.97770 1.20966 0.89315 0.96797 0.90968 1.43570 1.75540 1.02651 1.05927 1.19094 1.00967 0.81202 1.34986 0.91179 1.25118 0.94579 0.96422 1.00678 1.69807 1.03485 1.35533 1.44394 0.86669 0.77076 0.86981 0.78887 1.20981 1.21718 1.19854 1.20376 0.90126 0.94571 0.91297 1.21388 1.00432 0.90999 0.93111 1.21074 0.94023 0.96191 0.98281 1.16060 0.98331 0.87667 1.01845 1.25797 0.93088 0.92822 0.93156 1.81153 1.09312 1.11719 1.08955 1.20876 0.99722 0.93161 0.97490 1.21003 0.95415 0.96038 0.99859 1.22294 0.97465 0.94811 0.98663 1.96897 1.83658 1.16023 1.95486 0.95482 0.95071 0.90553 0.95610 0.94226 0.92299 0.92945 0.93570 0.94413 0.85798 0.85298 0.85402 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -6.95 9.26 -35.23 -0.33 -7.27 16 3 C 0.04 0.71 6.28 37.15 0.23 0.94 16 4 C 0.15 2.80 6.16 -4.05 -0.02 2.78 16 5 N -0.56 -12.25 2.40 -174.61 -0.42 -12.66 16 6 C -0.23 -5.70 7.36 -15.06 -0.11 -5.81 16 7 H 0.07 1.85 6.86 -52.49 -0.36 1.49 16 8 C 0.03 0.79 3.35 -17.43 -0.06 0.73 16 9 N -0.89 -23.08 11.33 55.49 0.63 -22.46 16 10 Si 0.87 20.41 27.83 -169.99 -4.73 15.68 16 11 H -0.28 -6.39 6.69 56.52 0.38 -6.01 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.16 3.32 4.86 -5.19 -0.03 3.30 16 15 C -0.05 -0.94 4.92 -104.65 -0.51 -1.45 16 16 C -0.07 -1.10 8.21 -39.17 -0.32 -1.42 16 17 C -0.03 -0.48 5.73 -106.91 -0.61 -1.09 16 18 C 0.27 3.78 15.33 -22.51 -0.35 3.43 16 19 N -0.44 -6.85 18.53 41.79 0.77 -6.07 16 20 C -0.09 -1.15 9.76 -39.18 -0.38 -1.53 16 21 C -0.10 -1.45 9.77 -39.62 -0.39 -1.84 16 22 C -0.05 -0.88 6.23 -39.41 -0.25 -1.12 16 23 Br -0.01 -0.14 25.92 -68.01 -1.76 -1.90 16 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.69 6.33 -51.93 -0.33 0.37 16 29 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 30 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 31 H 0.25 6.53 8.31 -40.82 -0.34 6.20 16 32 H 0.04 0.73 7.84 -51.93 -0.41 0.33 16 33 H 0.12 2.87 4.56 -51.93 -0.24 2.64 16 34 H 0.13 1.76 8.04 -52.49 -0.42 1.33 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 321.74 15.07 4.85 4.85 Total: -1.00 -26.81 321.74 -6.95 -33.76 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.28 Total: -2.43 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.68 Total: -1.49 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.98 Total: -41.19 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.33 Total: -7.27 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.73 Total: 15.68 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -1.76 Total: -1.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.81 -6.95 -33.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459533011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.276 kcal (2) G-P(sol) polarization free energy of solvation -26.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds