Wall clock time and date at job start Tue Mar 31 2020 21:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99712 * 2 1 4 4 C 1.52993 * 109.47139 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47439 * 64.99573 * 4 3 2 6 6 C 1.36938 * 119.99978 * 275.38173 * 5 4 3 7 7 H 1.07999 * 119.99988 * 41.97730 * 6 5 4 8 8 C 1.38815 * 120.00060 * 221.96510 * 6 5 4 9 9 N 1.31618 * 119.99963 * 12.18708 * 8 6 5 10 10 Si 1.86800 * 120.00134 * 192.17511 * 8 6 5 11 11 H 1.48507 * 109.46744 * 90.00396 * 10 8 6 12 12 H 1.48491 * 109.47580 * 210.00714 * 10 8 6 13 13 H 1.48497 * 109.47231 * 330.01153 * 10 8 6 14 14 C 1.46508 * 120.00066 * 95.38656 * 5 4 3 15 15 C 1.50707 * 109.46698 * 276.52408 * 14 5 4 16 16 C 1.37929 * 119.92447 * 98.66874 * 15 14 5 17 17 C 1.39643 * 119.84924 * 179.75122 * 16 15 14 18 18 C 1.43195 * 120.13497 * 180.24827 * 17 16 15 19 19 N 6.76874 * 82.49503 * 330.74755 * 2 1 3 20 20 C 1.39675 * 119.72009 * 0.51941 * 17 16 15 21 21 C 1.37883 * 119.85651 * 359.72677 * 20 17 16 22 22 C 1.38450 * 119.92739 * 278.93826 * 15 14 5 23 23 Br 1.89099 * 119.85871 * 0.02776 * 22 15 14 24 24 H 1.08996 * 109.47482 * 299.99932 * 1 2 3 25 25 H 1.09000 * 109.47491 * 60.00459 * 1 2 3 26 26 H 1.09006 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47147 * 59.99600 * 3 2 1 28 28 H 1.09003 * 109.46784 * 300.00113 * 3 2 1 29 29 H 1.09002 * 109.46859 * 304.99180 * 4 3 2 30 30 H 1.09000 * 109.47099 * 184.99966 * 4 3 2 31 31 H 0.97003 * 120.00043 * 179.97438 * 9 8 6 32 32 H 1.08995 * 109.46829 * 36.52372 * 14 5 4 33 33 H 1.08996 * 109.46932 * 156.52552 * 14 5 4 34 34 H 1.07998 * 120.07420 * 359.97438 * 16 15 14 35 35 H 1.07999 * 120.07139 * 179.71217 * 20 17 16 36 36 H 1.08001 * 119.92956 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2526 6 6 3.9914 -0.7996 -1.3724 7 1 3.1728 -1.3855 -0.9814 8 6 5.0595 -1.4292 -1.9968 9 7 6.1594 -0.7552 -2.2580 10 14 4.9358 -3.2331 -2.4659 11 1 4.3851 -3.3505 -3.8400 12 1 6.2855 -3.8505 -2.4190 13 1 4.0383 -3.9323 -1.5116 14 6 4.3992 1.4035 -2.3765 15 6 3.1880 1.8504 -3.1541 16 6 2.6562 3.1046 -2.9385 17 6 1.5371 3.5191 -3.6636 18 6 0.9832 4.8219 -3.4486 19 7 0.5449 5.8550 -3.2793 20 6 0.9569 2.6553 -4.5954 21 6 1.4952 1.4021 -4.7978 22 6 2.6083 0.9989 -4.0792 23 35 3.3391 -0.7221 -4.3621 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8463 -0.8900 29 1 3.8513 0.5684 0.8410 30 1 3.9783 2.1766 0.0889 31 1 6.9059 -1.1953 -2.6939 32 1 4.9305 2.2767 -1.9980 33 1 5.0589 0.8312 -3.0287 34 1 3.1065 3.7660 -2.2132 35 1 0.0885 2.9682 -5.1560 36 1 1.0472 0.7331 -5.5177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459533011.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:09 Heat of formation + Delta-G solvation = 27.703085 kcal Electronic energy + Delta-G solvation = -21819.858682 eV Core-core repulsion = 18544.191393 eV Total energy + Delta-G solvation = -3275.667289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 338.037 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.57382 -38.74326 -37.69509 -36.84762 -33.50665 -33.31383 -32.51578 -30.42497 -29.86736 -27.24839 -27.04307 -24.87581 -24.33485 -22.89365 -21.96352 -19.32238 -18.39733 -17.20538 -16.97904 -16.88189 -16.64708 -16.20378 -15.76669 -15.35632 -15.28223 -15.07851 -14.75692 -14.24766 -14.14022 -13.96139 -13.54058 -13.43085 -13.37146 -12.83173 -12.72829 -12.59051 -12.27789 -12.19560 -11.99686 -11.85624 -11.78745 -11.65568 -11.36319 -10.71947 -10.36477 -9.91527 -9.75327 -9.40559 -8.28684 -7.63238 -5.20566 -0.30535 0.40842 1.04228 1.42452 1.55042 1.57806 1.59355 1.87763 2.62076 2.83212 2.85867 3.21607 3.54577 3.90447 3.92651 3.97702 4.28593 4.44658 4.47816 4.56090 4.64979 4.66861 4.73098 4.81819 4.84858 4.88063 4.97826 5.06769 5.13926 5.29479 5.38579 5.58515 5.78354 5.89469 6.04703 6.40920 6.58003 6.79392 7.42296 8.03791 8.58450 9.36466 Molecular weight = 338.04amu Principal moments of inertia in cm(-1) A = 0.013452 B = 0.006836 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.914996 B = 4094.881589 C = 4949.699403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.050 3.950 4 C 0.143 3.857 5 N -0.574 5.574 6 C -0.218 4.218 7 H 0.048 0.952 8 C 0.007 3.993 9 N -0.912 5.912 10 Si 0.899 3.101 11 H -0.274 1.274 12 H -0.301 1.301 13 H -0.280 1.280 14 C 0.167 3.833 15 C -0.069 4.069 16 C -0.066 4.066 17 C -0.028 4.028 18 C 0.286 3.714 19 N -0.457 5.457 20 C -0.066 4.066 21 C -0.099 4.099 22 C -0.063 4.063 23 Br -0.040 7.040 24 H 0.047 0.953 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.041 0.959 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.246 0.754 32 H 0.040 0.960 33 H 0.097 0.903 34 H 0.142 0.858 35 H 0.166 0.834 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 4.636 -4.353 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C -0.029 4.029 4 C 0.017 3.983 5 N -0.293 5.293 6 C -0.349 4.349 7 H 0.066 0.934 8 C -0.190 4.190 9 N -0.557 5.557 10 Si 0.730 3.270 11 H -0.200 1.200 12 H -0.229 1.229 13 H -0.205 1.205 14 C 0.041 3.959 15 C -0.074 4.074 16 C -0.088 4.088 17 C -0.032 4.032 18 C -0.029 4.029 19 N -0.133 5.133 20 C -0.087 4.087 21 C -0.119 4.119 22 C -0.144 4.144 23 Br 0.047 6.953 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.160 0.840 35 H 0.183 0.817 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.562 5.335 -4.217 11.734 hybrid contribution 0.023 -1.041 -0.205 1.062 sum -9.539 4.293 -4.422 11.357 Atomic orbital electron populations 1.22758 0.81574 1.02588 0.99747 1.88062 1.19589 1.28753 1.95216 1.23321 0.96514 0.84185 0.98873 1.21057 0.90929 0.97161 0.89175 1.43640 1.76065 1.01998 1.07550 1.18855 0.99661 0.82558 1.33801 0.93394 1.25299 0.94591 0.97594 1.01506 1.69895 1.03836 1.35891 1.46099 0.86268 0.76136 0.85494 0.79085 1.20040 1.22860 1.20540 1.20123 0.91082 0.93896 0.90762 1.20990 0.99735 0.92440 0.94239 1.21096 0.94150 0.95202 0.98353 1.16025 0.97831 0.87601 1.01730 1.25610 0.92414 0.92407 0.92440 1.81200 1.10115 1.12362 1.09650 1.21263 0.99679 0.91758 0.96037 1.21241 0.94162 0.96971 0.99535 1.22377 0.98792 0.93360 0.99920 1.96855 1.84414 1.18551 1.95495 0.93474 0.94603 0.89859 0.93218 0.94060 0.94375 0.90898 0.94391 0.94131 0.88544 0.84005 0.81661 0.82762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.40 -14.83 9.26 -148.98 -1.38 -16.21 16 3 C 0.05 1.65 6.28 71.98 0.45 2.10 16 4 C 0.14 5.38 6.16 86.38 0.53 5.91 16 5 N -0.57 -25.15 2.40 -706.34 -1.69 -26.85 16 6 C -0.22 -10.87 7.36 84.03 0.62 -10.25 16 7 H 0.05 2.60 6.86 -2.91 -0.02 2.58 16 8 C 0.01 0.37 3.35 84.86 0.28 0.65 16 9 N -0.91 -48.66 11.33 21.65 0.25 -48.41 16 10 Si 0.90 42.60 27.83 68.60 1.91 44.51 16 11 H -0.27 -12.40 6.69 99.48 0.67 -11.73 16 12 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 14 C 0.17 6.82 4.86 85.63 0.42 7.23 16 15 C -0.07 -2.32 4.92 -19.89 -0.10 -2.41 16 16 C -0.07 -1.78 8.21 22.54 0.18 -1.60 16 17 C -0.03 -0.65 5.73 -21.35 -0.12 -0.78 16 18 C 0.29 7.01 15.33 88.34 1.35 8.36 16 19 N -0.46 -12.88 18.53 18.99 0.35 -12.52 16 20 C -0.07 -1.36 9.76 22.53 0.22 -1.14 16 21 C -0.10 -2.45 9.77 22.25 0.22 -2.23 16 22 C -0.06 -2.08 6.23 22.38 0.14 -1.94 16 23 Br -0.04 -1.54 25.92 -20.37 -0.53 -2.07 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.34 6.33 -2.39 -0.02 1.33 16 29 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 30 H 0.07 2.39 7.90 -2.39 -0.02 2.37 16 31 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 32 H 0.04 1.57 7.84 -2.39 -0.02 1.55 16 33 H 0.10 4.56 4.56 -2.39 -0.01 4.54 16 34 H 0.14 3.45 8.04 -2.91 -0.02 3.42 16 35 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 36 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -58.73 321.74 5.41 -53.32 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 1.06 Total: 2.22 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.45 Total: 6.00 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -1.10 Total: -87.78 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -1.38 Total: -16.21 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.91 Total: 44.51 kcal Atomic # 35 Polarization: -1.54 SS G_CDS: -0.53 Total: -2.07 kcal Total: -58.73 5.41 -53.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459533011.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.026 kcal (2) G-P(sol) polarization free energy of solvation -58.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds